Wall clock time and date at job start Tue Mar 31 2020 13:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 N 1.46494 * 109.47244 * 179.97438 * 3 2 1 5 5 N 1.28442 * 125.19171 * 271.97147 * 4 3 2 6 6 C 1.30863 * 110.92985 * 180.02562 * 5 4 3 7 7 C 1.39673 * 107.85825 * 359.77000 * 6 5 4 8 8 C 1.36599 * 125.18831 * 91.98801 * 4 3 2 9 9 C 1.47167 * 126.88699 * 359.94805 * 8 4 3 10 10 O 1.21624 * 119.99583 * 5.38346 * 9 8 4 11 11 N 1.34767 * 119.99959 * 185.38784 * 9 8 4 12 12 C 1.46503 * 119.99954 * 175.08580 * 11 9 8 13 13 C 1.52996 * 109.47548 * 179.97438 * 12 11 9 14 14 H 1.09003 * 109.68015 * 300.10495 * 13 12 11 15 15 C 1.53293 * 109.68606 * 179.54385 * 13 12 11 16 16 O 1.42957 * 109.22331 * 187.97495 * 15 13 12 17 17 C 1.42958 * 114.16617 * 62.58520 * 16 15 13 18 18 C 1.53291 * 109.22322 * 297.41650 * 17 16 15 19 19 N 1.47152 * 108.38575 * 52.30283 * 18 17 16 20 20 C 1.36930 * 120.98255 * 129.48424 * 19 18 17 21 21 H 1.08002 * 120.00254 * 210.59279 * 20 19 18 22 22 C 1.38819 * 120.00151 * 30.59875 * 20 19 18 23 23 N 1.31614 * 119.99805 * 11.21052 * 22 20 19 24 24 Si 1.86801 * 120.00149 * 191.21753 * 22 20 19 25 25 H 1.48509 * 109.46795 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47227 * 119.99601 * 24 22 20 27 27 H 1.48494 * 109.47033 * 239.99614 * 24 22 20 28 28 H 1.08998 * 109.46876 * 60.00215 * 1 2 3 29 29 H 1.08994 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47628 * 300.00433 * 1 2 3 31 31 H 1.08992 * 109.47312 * 239.99899 * 2 1 3 32 32 H 1.08998 * 109.46876 * 119.99785 * 2 1 3 33 33 H 1.08999 * 109.46827 * 59.99605 * 3 2 1 34 34 H 1.09003 * 109.46608 * 300.00205 * 3 2 1 35 35 H 1.07994 * 126.07143 * 180.02562 * 6 5 4 36 36 H 1.08000 * 127.31965 * 180.23553 * 7 6 5 37 37 H 0.97002 * 120.00350 * 355.08606 * 11 9 8 38 38 H 1.09003 * 109.46938 * 59.99665 * 12 11 9 39 39 H 1.09000 * 109.47046 * 299.99856 * 12 11 9 40 40 H 1.09000 * 109.51375 * 307.90329 * 15 13 12 41 41 H 1.09006 * 109.50875 * 68.05002 * 15 13 12 42 42 H 1.09009 * 109.51176 * 177.49428 * 17 16 15 43 43 H 1.08999 * 109.55875 * 57.36837 * 17 16 15 44 44 H 1.09004 * 109.67998 * 292.57919 * 18 17 16 45 45 H 1.09004 * 109.71400 * 172.04578 * 18 17 16 46 46 H 0.96999 * 120.00261 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2448 1.4067 1.0500 6 6 5.5132 1.4183 0.7283 7 6 5.6014 1.4611 -0.6649 8 6 4.2926 1.4812 -1.1148 9 6 3.8403 1.5285 -2.5144 10 8 2.6554 1.6350 -2.7672 11 7 4.7390 1.4536 -3.5159 12 6 4.2825 1.3921 -4.9066 13 6 5.4937 1.3138 -5.8381 14 1 6.1203 2.1950 -5.7003 15 6 5.0212 1.2377 -7.2944 16 8 6.1439 0.9785 -8.1406 17 6 6.7887 -0.2726 -7.8904 18 6 7.3518 -0.2740 -6.4647 19 7 6.2715 0.1010 -5.5386 20 6 5.9983 -0.6560 -4.4308 21 1 4.9899 -0.7081 -4.0475 22 6 7.0174 -1.3565 -3.8001 23 7 8.2723 -1.1254 -4.1228 24 14 6.6078 -2.6273 -2.4937 25 1 5.1351 -2.6977 -2.3162 26 1 7.1199 -3.9553 -2.9171 27 1 7.2428 -2.2387 -1.2088 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.3442 1.3944 1.4176 36 1 6.4999 1.4772 -1.2640 37 1 5.6881 1.4404 -3.3159 38 1 3.7033 2.2858 -5.1387 39 1 3.6591 0.5088 -5.0457 40 1 4.2928 0.4336 -7.3993 41 1 4.5623 2.1849 -7.5781 42 1 7.6017 -0.4121 -8.6031 43 1 6.0675 -1.0828 -7.9978 44 1 8.1657 0.4473 -6.3907 45 1 7.7199 -1.2694 -6.2157 46 1 8.9844 -1.6151 -3.6824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050939285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:52 Heat of formation + Delta-G solvation = 4.551695 kcal Electronic energy + Delta-G solvation = -28870.930758 eV Core-core repulsion = 24990.619203 eV Total energy + Delta-G solvation = -3880.311555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.53918 -40.71830 -39.76248 -37.04817 -36.39944 -35.30902 -33.48677 -32.53065 -32.33881 -31.52973 -28.99235 -27.58827 -27.06947 -25.23274 -24.23135 -23.24783 -23.10164 -22.11727 -21.43459 -20.82680 -19.26965 -18.26619 -17.62151 -17.44715 -16.93748 -16.84764 -16.38473 -16.24751 -16.13418 -16.01878 -15.51169 -15.29487 -15.21903 -14.86492 -14.79320 -14.37957 -14.19825 -14.09898 -13.56016 -13.12641 -13.10384 -13.00250 -12.92153 -12.75186 -12.48969 -12.37668 -12.14844 -11.99060 -11.92504 -11.85102 -11.84544 -11.30030 -11.12222 -10.65809 -10.55444 -10.31143 -10.04308 -9.84385 -8.61538 -7.87113 -5.36472 0.22090 1.35877 1.38024 1.45309 1.48755 1.61654 2.16210 2.33182 2.44542 3.05560 3.29150 3.44105 3.51818 3.64642 3.78706 3.96502 4.01759 4.12235 4.21359 4.23443 4.34086 4.41760 4.49478 4.49534 4.59239 4.64613 4.65885 4.68355 4.72649 4.77498 4.84246 4.99965 5.02810 5.07251 5.12983 5.25480 5.32148 5.44037 5.52492 5.65842 5.70123 5.74310 6.31367 6.38122 6.52745 7.00933 7.11601 7.14190 7.77459 8.33187 9.17305 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.004761 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.464665 B = 5879.566348 C = 6844.841536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.112 3.888 4 N -0.262 5.262 5 N -0.292 5.292 6 C -0.007 4.007 7 C -0.187 4.187 8 C -0.052 4.052 9 C 0.584 3.416 10 O -0.576 6.576 11 N -0.678 5.678 12 C 0.143 3.857 13 C 0.125 3.875 14 H 0.040 0.960 15 C 0.058 3.942 16 O -0.397 6.397 17 C 0.046 3.954 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.239 4.239 21 H 0.067 0.933 22 C -0.021 4.021 23 N -0.921 5.921 24 Si 0.934 3.066 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.286 1.286 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.215 0.785 36 H 0.165 0.835 37 H 0.414 0.586 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.043 0.957 44 H 0.008 0.992 45 H 0.066 0.934 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 5.500 3.488 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C -0.007 4.007 4 N -0.051 5.051 5 N -0.125 5.125 6 C -0.182 4.182 7 C -0.216 4.216 8 C -0.181 4.181 9 C 0.370 3.630 10 O -0.458 6.458 11 N -0.328 5.328 12 C 0.020 3.980 13 C 0.019 3.981 14 H 0.058 0.942 15 C -0.021 4.021 16 O -0.316 6.316 17 C -0.032 4.032 18 C 0.023 3.977 19 N -0.331 5.331 20 C -0.369 4.369 21 H 0.085 0.915 22 C -0.219 4.219 23 N -0.567 5.567 24 Si 0.765 3.235 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.213 1.213 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.231 0.769 36 H 0.182 0.818 37 H 0.252 0.748 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.085 0.915 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.482 5.588 4.118 12.572 hybrid contribution 1.377 -1.303 0.380 1.933 sum -9.105 4.285 4.498 11.023 Atomic orbital electron populations 1.21626 0.91719 1.03137 1.03156 1.21783 0.98953 0.94637 1.01553 1.22467 0.71682 1.00035 1.06494 1.45996 1.08240 1.49454 1.01373 1.73113 1.04825 1.20510 1.14039 1.24051 0.93862 1.05221 0.95114 1.22552 0.95866 1.06871 0.96355 1.21512 0.92167 1.14443 0.89931 1.16989 0.85507 0.76933 0.83596 1.90677 1.16834 1.53271 1.85021 1.45745 1.10525 1.70838 1.05682 1.21225 0.95870 1.01638 0.79316 1.21582 0.92129 0.90085 0.94333 0.94221 1.22986 0.87755 1.02209 0.89110 1.87810 1.46117 1.39072 1.58568 1.23212 0.96860 0.85167 0.97951 1.21250 0.89399 0.99802 0.87223 1.44289 1.38153 1.25059 1.25558 1.19241 0.92495 1.21872 1.03265 0.91549 1.25419 0.95178 1.01924 0.99346 1.70071 0.98455 1.43166 1.44976 0.85726 0.76973 0.80241 0.80598 1.21275 1.22164 1.21304 0.92080 0.91399 0.90360 0.94113 0.91622 0.86379 0.87027 0.76858 0.81761 0.74773 0.89395 0.92603 0.93162 0.86302 0.87870 0.93847 0.97388 0.91545 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 71.98 0.71 -1.85 16 2 C -0.13 -3.33 6.26 30.60 0.19 -3.14 16 3 C 0.11 2.96 5.91 86.38 0.51 3.47 16 4 N -0.26 -8.48 3.35 -334.68 -1.12 -9.60 16 5 N -0.29 -9.26 11.90 -57.14 -0.68 -9.94 16 6 C -0.01 -0.21 12.03 85.18 1.02 0.81 16 7 C -0.19 -6.18 10.50 22.66 0.24 -5.95 16 8 C -0.05 -1.84 6.96 40.79 0.28 -1.56 16 9 C 0.58 21.57 7.79 86.59 0.67 22.25 16 10 O -0.58 -22.26 14.64 -4.11 -0.06 -22.32 16 11 N -0.68 -24.61 3.75 -466.64 -1.75 -26.36 16 12 C 0.14 4.85 4.45 86.38 0.38 5.23 16 13 C 0.12 4.49 3.21 44.96 0.14 4.63 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.06 1.80 6.29 72.08 0.45 2.26 16 16 O -0.40 -13.96 10.74 -148.98 -1.60 -15.56 16 17 C 0.05 1.64 6.98 72.08 0.50 2.14 16 18 C 0.15 6.54 5.38 86.35 0.46 7.01 16 19 N -0.60 -26.55 3.03 -673.72 -2.04 -28.60 16 20 C -0.24 -11.44 7.08 84.04 0.60 -10.85 16 21 H 0.07 3.28 5.78 -2.91 -0.02 3.26 16 22 C -0.02 -1.08 5.05 84.86 0.43 -0.65 16 23 N -0.92 -48.93 11.12 21.65 0.24 -48.69 16 24 Si 0.93 43.21 29.57 68.60 2.03 45.24 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.11 3.13 6.11 -2.39 -0.01 3.12 16 35 H 0.21 4.68 8.06 -2.91 -0.02 4.65 16 36 H 0.16 5.29 7.58 -2.91 -0.02 5.27 16 37 H 0.41 15.93 6.35 -92.71 -0.59 15.34 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 2.06 7.57 -2.39 -0.02 2.04 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.12 2.88 8.14 -2.38 -0.02 2.87 16 42 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 3.28 6.30 -2.38 -0.02 3.27 16 46 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -60.97 369.12 2.02 -58.95 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.40 Total: 33.08 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.61 Total: 23.80 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.35 Total: -123.20 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.66 Total: -37.88 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -60.97 2.02 -58.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050939285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.498 kcal (2) G-P(sol) polarization free energy of solvation -60.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds