Wall clock time and date at job start Tue Mar 31 2020 13:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 N 1.46493 * 109.47405 * 180.02562 * 3 2 1 5 5 N 1.28441 * 125.19268 * 86.25351 * 4 3 2 6 6 C 1.30874 * 110.92529 * 180.02562 * 5 4 3 7 7 C 1.39669 * 107.86013 * 0.02562 * 6 5 4 8 8 C 1.36604 * 125.18599 * 265.95057 * 4 3 2 9 9 C 1.47163 * 126.88805 * 359.97438 * 8 4 3 10 10 O 1.21632 * 119.99699 * 5.21729 * 9 8 4 11 11 N 1.34768 * 120.00042 * 185.21702 * 9 8 4 12 12 C 1.46503 * 119.99691 * 184.74504 * 11 9 8 13 13 C 1.52997 * 109.47055 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.68385 * 60.35446 * 13 12 11 15 15 C 1.53297 * 109.68468 * 180.87047 * 13 12 11 16 16 O 1.42959 * 109.22822 * 172.02437 * 15 13 12 17 17 C 1.42958 * 114.16723 * 297.42386 * 16 15 13 18 18 C 1.53294 * 109.22506 * 62.57403 * 17 16 15 19 19 N 1.47148 * 109.68359 * 299.83416 * 13 12 11 20 20 C 1.36936 * 120.98071 * 9.70909 * 19 13 12 21 21 H 1.07999 * 120.00277 * 324.82129 * 20 19 13 22 22 C 1.38816 * 120.00237 * 144.82937 * 20 19 13 23 23 N 1.31623 * 119.99840 * 357.95607 * 22 20 19 24 24 Si 1.86794 * 120.00211 * 177.96487 * 22 20 19 25 25 H 1.48503 * 109.47283 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47532 * 119.99659 * 24 22 20 27 27 H 1.48505 * 109.46956 * 239.99615 * 24 22 20 28 28 H 1.08997 * 109.46674 * 300.00046 * 1 2 3 29 29 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47161 * 59.99698 * 1 2 3 31 31 H 1.08997 * 109.47161 * 120.00302 * 2 1 3 32 32 H 1.09007 * 109.47040 * 240.00386 * 2 1 3 33 33 H 1.09009 * 109.47031 * 300.00612 * 3 2 1 34 34 H 1.09001 * 109.46993 * 59.99830 * 3 2 1 35 35 H 1.08001 * 126.06713 * 179.97438 * 6 5 4 36 36 H 1.08004 * 127.31283 * 179.97438 * 7 6 5 37 37 H 0.96992 * 120.00805 * 4.74999 * 11 9 8 38 38 H 1.09001 * 109.47360 * 299.99682 * 12 11 9 39 39 H 1.08999 * 109.47647 * 60.00076 * 12 11 9 40 40 H 1.09006 * 109.51194 * 291.94891 * 15 13 12 41 41 H 1.08997 * 109.51550 * 52.04467 * 15 13 12 42 42 H 1.08999 * 109.51292 * 182.50534 * 17 16 15 43 43 H 1.09001 * 109.50677 * 302.65118 * 17 16 15 44 44 H 1.08994 * 109.67927 * 67.42611 * 18 17 16 45 45 H 1.09006 * 109.67736 * 187.97609 * 18 17 16 46 46 H 0.96992 * 120.00321 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.2448 1.3740 -1.0483 6 6 5.5133 1.3944 -0.7270 7 6 5.6015 1.4843 0.6640 8 6 4.2927 1.5211 1.1127 9 6 3.8403 1.6203 2.5096 10 8 2.6551 1.5433 2.7719 11 7 4.7392 1.7964 3.4981 12 6 4.3011 1.7911 4.8961 13 6 5.5085 2.0107 5.8098 14 1 5.9693 2.9725 5.5845 15 6 5.0587 1.9843 7.2750 16 8 6.2106 2.0033 8.1215 17 6 7.0657 0.8674 7.9717 18 6 7.6183 0.8365 6.5422 19 7 6.4879 0.9318 5.6047 20 6 6.3505 0.0418 4.5731 21 1 5.3666 -0.2776 4.2628 22 6 7.4760 -0.4500 3.9262 23 7 8.6730 -0.0304 4.2775 24 14 7.2916 -1.7071 2.5569 25 1 5.8523 -2.0120 2.3552 26 1 7.8624 -1.1581 1.3007 27 1 8.0136 -2.9510 2.9264 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 6.3444 1.3490 -1.4152 36 1 6.5000 1.5224 1.2620 37 1 5.6762 1.9268 3.2841 38 1 3.5771 2.5907 5.0530 39 1 3.8389 0.8317 5.1284 40 1 4.4405 2.8580 7.4819 41 1 4.4828 1.0782 7.4629 42 1 7.8914 0.9374 8.6799 43 1 6.4979 -0.0433 8.1624 44 1 8.2920 1.6798 6.3908 45 1 8.1552 -0.0975 6.3763 46 1 9.4594 -0.3737 3.8253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050939288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:56 Heat of formation + Delta-G solvation = 21.061964 kcal Electronic energy + Delta-G solvation = -28875.689181 eV Core-core repulsion = 24996.093565 eV Total energy + Delta-G solvation = -3879.595616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27019 -39.19767 -38.23680 -35.62091 -35.16495 -33.63429 -31.91985 -31.36037 -30.72387 -30.11512 -27.26528 -26.48412 -25.64304 -23.49881 -22.81153 -22.05936 -21.76147 -20.80303 -19.83837 -19.41762 -17.83374 -16.61343 -16.02615 -15.96375 -15.58072 -15.48732 -15.20448 -14.84280 -14.64859 -14.32769 -14.06423 -13.76059 -13.73619 -13.62881 -13.15714 -13.10726 -12.86814 -12.68273 -12.13122 -12.00260 -11.92781 -11.60322 -11.43684 -11.03589 -10.98351 -10.85648 -10.77563 -10.58425 -10.44857 -10.24348 -10.16766 -9.74119 -9.65092 -9.03124 -8.98766 -8.76977 -8.71419 -8.33313 -6.72504 -5.96598 -3.51493 1.57975 2.59994 2.86232 3.25003 3.35643 3.39302 3.58033 3.72393 4.29804 4.50100 4.63457 4.79760 5.00217 5.05436 5.12321 5.12631 5.21992 5.39303 5.40049 5.52348 5.54425 5.64014 5.68063 5.79703 5.86660 5.90100 5.96990 6.01825 6.05830 6.11002 6.12344 6.15232 6.18005 6.31026 6.48992 6.69651 6.75362 6.95046 6.96357 7.05797 7.48870 7.65573 7.83922 8.01985 8.27027 8.30042 8.61873 9.01354 9.59183 10.20687 11.09051 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.004761 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.134713 B = 5879.318657 C = 7062.450332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.119 3.881 4 N -0.261 5.261 5 N -0.286 5.286 6 C -0.008 4.008 7 C -0.182 4.182 8 C -0.030 4.030 9 C 0.583 3.417 10 O -0.564 6.564 11 N -0.674 5.674 12 C 0.138 3.862 13 C 0.124 3.876 14 H 0.043 0.957 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.257 4.257 21 H 0.070 0.930 22 C 0.018 3.982 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.290 1.290 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.419 0.581 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.095 0.905 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 3.420 -3.870 9.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.049 5.049 5 N -0.118 5.118 6 C -0.184 4.184 7 C -0.210 4.210 8 C -0.158 4.158 9 C 0.368 3.632 10 O -0.445 6.445 11 N -0.325 5.325 12 C 0.014 3.986 13 C 0.017 3.983 14 H 0.061 0.939 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.044 4.044 18 C 0.019 3.981 19 N -0.318 5.318 20 C -0.387 4.387 21 H 0.088 0.912 22 C -0.183 4.183 23 N -0.540 5.540 24 Si 0.718 3.282 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.216 1.216 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.200 0.800 36 H 0.182 0.818 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.113 0.887 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.022 3.397 -4.515 11.505 hybrid contribution 1.206 -1.017 -0.403 1.629 sum -8.816 2.380 -4.918 10.372 Atomic orbital electron populations 1.21648 0.94215 1.02287 1.02130 1.21817 0.96817 0.95419 1.03312 1.22220 0.72910 0.99559 1.05414 1.45713 1.07363 1.49792 1.01985 1.73115 1.04321 1.20376 1.14025 1.23519 0.93323 1.06348 0.95186 1.22445 0.96209 1.06841 0.95549 1.21494 0.91310 1.12961 0.90021 1.16874 0.85690 0.77498 0.83125 1.90704 1.16296 1.53308 1.84191 1.45733 1.11921 1.69643 1.05217 1.21216 0.96093 1.01478 0.79778 1.21454 0.90609 0.93375 0.92846 0.93938 1.22849 0.87697 1.00841 0.90886 1.87804 1.36405 1.45004 1.61864 1.23380 0.93115 0.87560 1.00377 1.21458 0.89533 1.02522 0.84635 1.44060 1.26320 1.30070 1.31349 1.19184 0.92653 1.18705 1.08142 0.91221 1.25236 0.95760 0.99468 0.97791 1.69938 0.97204 1.44533 1.42283 0.86421 0.78012 0.81275 0.82513 1.20183 1.20676 1.21629 0.91947 0.92115 0.92584 0.90812 0.91444 0.89046 0.86490 0.79988 0.81783 0.74215 0.91929 0.91292 0.89907 0.93528 0.90263 0.94176 0.95256 0.88722 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.14 -1.73 6.26 -26.73 -0.17 -1.90 16 3 C 0.12 1.61 5.86 -4.05 -0.02 1.59 16 4 N -0.26 -4.31 3.35 -57.14 -0.19 -4.50 16 5 N -0.29 -4.73 11.90 30.59 0.36 -4.37 16 6 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 7 C -0.18 -3.13 10.50 -38.99 -0.41 -3.54 16 8 C -0.03 -0.53 6.96 -82.06 -0.57 -1.10 16 9 C 0.58 10.89 7.79 -12.64 -0.10 10.79 16 10 O -0.56 -11.02 14.68 5.25 0.08 -10.95 16 11 N -0.67 -12.41 3.81 -61.47 -0.23 -12.65 16 12 C 0.14 2.44 4.46 -4.04 -0.02 2.42 16 13 C 0.12 2.32 3.21 -67.43 -0.22 2.10 16 14 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.06 0.96 6.29 37.31 0.23 1.19 16 16 O -0.39 -7.40 10.74 -35.23 -0.38 -7.78 16 17 C 0.03 0.63 6.99 37.31 0.26 0.89 16 18 C 0.14 3.16 5.35 -3.53 -0.02 3.14 16 19 N -0.59 -13.09 3.03 -164.29 -0.50 -13.59 16 20 C -0.26 -6.13 6.85 -15.06 -0.10 -6.23 16 21 H 0.07 1.72 6.01 -52.49 -0.32 1.40 16 22 C 0.02 0.44 5.22 -17.43 -0.09 0.35 16 23 N -0.90 -23.24 10.98 55.49 0.61 -22.63 16 24 Si 0.89 20.41 29.55 -169.99 -5.02 15.39 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.12 1.66 6.20 -51.93 -0.32 1.33 16 35 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.16 2.82 7.62 -52.48 -0.40 2.42 16 37 H 0.42 8.08 6.35 -40.82 -0.26 7.82 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.31 7.57 -51.93 -0.39 0.91 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.30 6.37 -51.93 -0.33 1.97 16 46 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -28.30 369.36 -7.85 -36.14 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.07 Total: 11.06 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.06 Total: 8.30 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.05 Total: -57.74 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.30 Total: -18.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.30 -7.85 -36.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050939288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.205 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds