Wall clock time and date at job start Tue Mar 31 2020 13:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47426 * 2 1 4 4 N 1.46499 * 109.47304 * 120.00512 * 2 1 3 5 5 C 1.35846 * 126.13294 * 299.97081 * 4 2 1 6 6 N 1.30174 * 109.00302 * 180.02562 * 5 4 2 7 7 C 1.35762 * 108.86299 * 0.02562 * 6 5 4 8 8 C 1.47324 * 126.22752 * 179.97438 * 7 6 5 9 9 O 1.21628 * 119.99272 * 180.02562 * 8 7 6 10 10 N 1.34769 * 120.00531 * 0.30650 * 8 7 6 11 11 C 1.46502 * 120.00116 * 179.72134 * 10 8 7 12 12 C 1.52997 * 109.47073 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.67951 * 300.08392 * 12 11 10 14 14 C 1.53292 * 109.68329 * 179.53058 * 12 11 10 15 15 O 1.42967 * 109.22650 * 187.97551 * 14 12 11 16 16 C 1.42963 * 114.16677 * 62.57422 * 15 14 12 17 17 C 1.53295 * 109.22358 * 297.42337 * 16 15 14 18 18 N 1.47150 * 108.38389 * 52.30459 * 17 16 15 19 19 C 1.36936 * 120.98411 * 129.48937 * 18 17 16 20 20 H 1.08002 * 119.99926 * 211.18737 * 19 18 17 21 21 C 1.38812 * 120.00145 * 31.18044 * 19 18 17 22 22 N 1.31624 * 119.99989 * 10.73858 * 21 19 18 23 23 Si 1.86794 * 120.00346 * 190.74080 * 21 19 18 24 24 H 1.48504 * 109.46985 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47532 * 120.00005 * 23 21 19 26 26 H 1.48496 * 109.47055 * 240.00400 * 23 21 19 27 27 C 1.35378 * 126.13472 * 120.28242 * 4 2 1 28 28 H 1.09003 * 109.46793 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47307 * 59.99670 * 1 2 3 30 30 H 1.08991 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46459 * 240.00318 * 2 1 3 32 32 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47147 * 300.00428 * 3 2 1 34 34 H 1.09002 * 109.46701 * 60.00010 * 3 2 1 35 35 H 1.08001 * 125.50104 * 0.02562 * 5 4 2 36 36 H 0.97006 * 120.00298 * 359.72307 * 10 8 7 37 37 H 1.08997 * 109.46946 * 299.99704 * 11 10 8 38 38 H 1.08997 * 109.47016 * 60.00250 * 11 10 8 39 39 H 1.09005 * 109.51391 * 307.89425 * 14 12 11 40 40 H 1.08996 * 109.51601 * 68.04793 * 14 12 11 41 41 H 1.09002 * 109.50840 * 177.49630 * 16 15 14 42 42 H 1.09001 * 109.55150 * 57.37274 * 16 15 14 43 43 H 1.08998 * 109.68043 * 292.58068 * 17 16 15 44 44 H 1.08997 * 109.70732 * 172.04248 * 17 16 15 45 45 H 0.96995 * 120.00087 * 179.97438 * 22 21 19 46 46 H 1.07996 * 126.56632 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7687 -0.3367 2.4836 6 7 2.3644 -1.1786 3.2779 7 6 3.0180 -2.1024 2.5278 8 6 3.8169 -3.2304 3.0374 9 8 4.3571 -3.9934 2.2593 10 7 3.9444 -3.4204 4.3655 11 6 4.7338 -4.5458 4.8722 12 6 4.7169 -4.5328 6.4020 13 1 5.1430 -3.5979 6.7659 14 6 5.5320 -5.7156 6.9373 15 8 5.3583 -5.8044 8.3536 16 6 4.0128 -6.0608 8.7634 17 6 3.1199 -4.8956 8.3215 18 7 3.3328 -4.6672 6.8835 19 6 2.2743 -4.5816 6.0190 20 1 2.3842 -4.9113 4.9965 21 6 1.0600 -4.0711 6.4570 22 7 0.9801 -3.4769 7.6287 23 14 -0.4606 -4.2274 5.3835 24 1 -0.1076 -4.9317 4.1246 25 1 -1.5007 -5.0012 6.1080 26 1 -0.9827 -2.8743 5.0646 27 6 2.8043 -1.7928 1.2165 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.1722 0.5071 2.7976 36 1 3.5135 -2.8119 4.9861 37 1 4.3053 -5.4812 4.5124 38 1 5.7611 -4.4570 4.5191 39 1 5.1862 -6.6375 6.4697 40 1 6.5869 -5.5640 6.7087 41 1 3.9749 -6.1575 9.8484 42 1 3.6610 -6.9840 8.3030 43 1 3.3856 -3.9976 8.8792 44 1 2.0744 -5.1446 8.5028 45 1 0.1317 -3.1198 7.9346 46 1 3.1872 -2.3260 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051042734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:34 Heat of formation + Delta-G solvation = 9.245755 kcal Electronic energy + Delta-G solvation = -28359.338303 eV Core-core repulsion = 24479.230297 eV Total energy + Delta-G solvation = -3880.108005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04934 -38.97083 -38.06624 -36.10796 -35.17119 -33.41577 -31.56695 -30.95955 -30.31811 -29.32581 -27.73114 -27.10535 -25.57499 -23.33982 -23.17268 -22.71133 -21.35799 -20.39108 -19.61137 -19.16015 -17.52800 -16.73518 -15.87846 -15.79463 -15.65951 -15.39892 -14.97570 -14.64766 -14.51300 -14.17467 -13.93256 -13.78934 -13.73904 -13.67029 -13.18210 -13.12370 -12.79675 -12.68412 -12.57997 -12.36828 -11.84214 -11.69317 -11.60285 -11.45394 -10.94070 -10.78165 -10.62582 -10.31048 -10.13365 -9.94639 -9.92051 -9.62210 -9.58030 -9.45465 -8.88346 -8.55350 -8.42676 -8.02317 -6.59620 -5.77572 -3.25942 1.88814 2.62629 2.76815 3.38309 3.46097 3.49964 3.96867 4.14953 4.20255 4.47846 4.49218 4.58834 4.62070 4.74215 4.77759 5.08105 5.21845 5.26012 5.27815 5.36403 5.42003 5.47586 5.60046 5.71872 5.72181 5.73866 5.83797 5.97363 6.11759 6.19318 6.21999 6.23899 6.32389 6.42353 6.61084 6.69910 6.87277 7.16972 7.17384 7.28764 7.58653 7.85069 7.94982 8.03458 8.41736 8.51657 9.02075 9.19565 9.79646 10.37943 11.29808 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.004057 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.308653 B = 6900.065174 C = 8051.272636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 C -0.163 4.163 4 N -0.456 5.456 5 C 0.180 3.820 6 N -0.446 5.446 7 C -0.048 4.048 8 C 0.594 3.406 9 O -0.572 6.572 10 N -0.678 5.678 11 C 0.135 3.865 12 C 0.124 3.876 13 H 0.041 0.959 14 C 0.057 3.943 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.073 0.927 21 C 0.016 3.984 22 N -0.900 5.900 23 Si 0.897 3.103 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.288 1.288 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.204 0.796 36 H 0.424 0.576 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.092 0.908 45 H 0.253 0.747 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 7.720 -12.602 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 C -0.221 4.221 4 N -0.140 5.140 5 C -0.103 4.103 6 N -0.164 5.164 7 C -0.178 4.178 8 C 0.379 3.621 9 O -0.453 6.453 10 N -0.328 5.328 11 C 0.011 3.989 12 C 0.017 3.983 13 H 0.059 0.941 14 C -0.022 4.022 15 O -0.312 6.312 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.184 4.184 22 N -0.544 5.544 23 Si 0.728 3.272 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.215 1.215 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.221 0.779 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.733 7.355 -12.127 14.288 hybrid contribution -1.541 0.300 -1.231 1.995 sum 0.192 7.654 -13.358 15.397 Atomic orbital electron populations 1.22195 0.93064 1.03564 1.03455 1.21498 0.95636 0.94074 0.86415 1.22181 1.02292 0.94144 1.03453 1.45626 1.38017 1.22331 1.08038 1.25024 1.04460 1.02269 0.78574 1.70775 1.09932 1.03449 1.32202 1.20698 1.06713 1.00136 0.90245 1.16890 0.79665 0.82749 0.82764 1.90714 1.50413 1.47055 1.57162 1.45849 1.50707 1.29954 1.06307 1.21178 0.94124 0.90188 0.93417 1.21427 0.88660 0.96478 0.91698 0.94136 1.22864 0.99134 0.98030 0.82217 1.87793 1.28506 1.93046 1.21814 1.23354 0.83078 0.99356 0.98512 1.21402 0.99151 0.93408 0.84123 1.44100 0.99329 1.84148 1.04079 1.19223 0.89306 1.35295 0.94199 0.90949 1.25058 0.98909 0.97404 0.96998 1.69985 1.24689 1.39835 1.19849 0.86277 0.83470 0.77357 0.80117 1.20448 1.21860 1.21494 1.22492 0.98463 0.91091 0.99671 0.91370 0.90426 0.91513 0.88089 0.91584 0.90463 0.91400 0.77950 0.73641 0.91498 0.92313 0.93508 0.89941 0.90320 0.94151 0.95324 0.88977 0.93687 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.24 37.16 0.34 -0.78 16 2 C 0.13 0.96 3.57 -67.93 -0.24 0.72 16 3 C -0.16 -0.97 9.24 37.16 0.34 -0.63 16 4 N -0.46 -5.53 2.59 -111.24 -0.29 -5.82 16 5 C 0.18 2.56 11.53 -89.91 -1.04 1.53 16 6 N -0.45 -8.44 11.01 -11.03 -0.12 -8.56 16 7 C -0.05 -0.92 6.98 -83.09 -0.58 -1.50 16 8 C 0.59 12.63 7.81 -12.57 -0.10 12.53 16 9 O -0.57 -12.90 16.88 5.25 0.09 -12.81 16 10 N -0.68 -14.60 3.77 -61.42 -0.23 -14.83 16 11 C 0.14 2.72 4.45 -4.04 -0.02 2.71 16 12 C 0.12 2.60 3.21 -67.42 -0.22 2.39 16 13 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.06 1.05 6.29 37.31 0.23 1.29 16 15 O -0.39 -7.95 10.74 -35.23 -0.38 -8.33 16 16 C 0.03 0.70 6.98 37.31 0.26 0.96 16 17 C 0.14 3.43 5.38 -3.53 -0.02 3.41 16 18 N -0.59 -14.41 3.03 -164.30 -0.50 -14.91 16 19 C -0.25 -6.63 7.06 -15.06 -0.11 -6.73 16 20 H 0.07 1.98 5.81 -52.49 -0.30 1.67 16 21 C 0.02 0.43 5.06 -17.43 -0.09 0.34 16 22 N -0.90 -25.45 11.13 55.49 0.62 -24.83 16 23 Si 0.90 22.38 29.57 -169.99 -5.03 17.35 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.02 0.31 11.22 -16.64 -0.19 0.12 16 28 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 35 H 0.20 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.42 9.92 7.03 -40.82 -0.29 9.64 16 37 H 0.07 1.43 7.57 -51.93 -0.39 1.04 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.39 6.33 -51.93 -0.33 2.06 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.18 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -33.30 372.70 -8.82 -42.11 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.19 Total: 8.65 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: -1.41 Total: 16.35 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.52 Total: -68.95 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.29 Total: -21.14 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.30 -8.82 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051042734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.358 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds