Wall clock time and date at job start Tue Mar 31 2020 13:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47426 * 2 1 4 4 N 1.46499 * 109.47304 * 120.00512 * 2 1 3 5 5 C 1.35846 * 126.13294 * 299.97081 * 4 2 1 6 6 N 1.30174 * 109.00302 * 180.02562 * 5 4 2 7 7 C 1.35762 * 108.86299 * 0.02562 * 6 5 4 8 8 C 1.47324 * 126.22752 * 179.97438 * 7 6 5 9 9 O 1.21628 * 119.99272 * 180.02562 * 8 7 6 10 10 N 1.34769 * 120.00531 * 0.30650 * 8 7 6 11 11 C 1.46502 * 120.00116 * 179.72134 * 10 8 7 12 12 C 1.52997 * 109.47073 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.67951 * 300.08392 * 12 11 10 14 14 C 1.53292 * 109.68329 * 179.53058 * 12 11 10 15 15 O 1.42967 * 109.22650 * 187.97551 * 14 12 11 16 16 C 1.42963 * 114.16677 * 62.57422 * 15 14 12 17 17 C 1.53295 * 109.22358 * 297.42337 * 16 15 14 18 18 N 1.47150 * 108.38389 * 52.30459 * 17 16 15 19 19 C 1.36936 * 120.98411 * 129.48937 * 18 17 16 20 20 H 1.08002 * 119.99926 * 211.18737 * 19 18 17 21 21 C 1.38812 * 120.00145 * 31.18044 * 19 18 17 22 22 N 1.31624 * 119.99989 * 10.73858 * 21 19 18 23 23 Si 1.86794 * 120.00346 * 190.74080 * 21 19 18 24 24 H 1.48504 * 109.46985 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47532 * 120.00005 * 23 21 19 26 26 H 1.48496 * 109.47055 * 240.00400 * 23 21 19 27 27 C 1.35378 * 126.13472 * 120.28242 * 4 2 1 28 28 H 1.09003 * 109.46793 * 300.00082 * 1 2 3 29 29 H 1.09000 * 109.47307 * 59.99670 * 1 2 3 30 30 H 1.08991 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46459 * 240.00318 * 2 1 3 32 32 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47147 * 300.00428 * 3 2 1 34 34 H 1.09002 * 109.46701 * 60.00010 * 3 2 1 35 35 H 1.08001 * 125.50104 * 0.02562 * 5 4 2 36 36 H 0.97006 * 120.00298 * 359.72307 * 10 8 7 37 37 H 1.08997 * 109.46946 * 299.99704 * 11 10 8 38 38 H 1.08997 * 109.47016 * 60.00250 * 11 10 8 39 39 H 1.09005 * 109.51391 * 307.89425 * 14 12 11 40 40 H 1.08996 * 109.51601 * 68.04793 * 14 12 11 41 41 H 1.09002 * 109.50840 * 177.49630 * 16 15 14 42 42 H 1.09001 * 109.55150 * 57.37274 * 16 15 14 43 43 H 1.08998 * 109.68043 * 292.58068 * 17 16 15 44 44 H 1.08997 * 109.70732 * 172.04248 * 17 16 15 45 45 H 0.96995 * 120.00087 * 179.97438 * 22 21 19 46 46 H 1.07996 * 126.56632 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7687 -0.3367 2.4836 6 7 2.3644 -1.1786 3.2779 7 6 3.0180 -2.1024 2.5278 8 6 3.8169 -3.2304 3.0374 9 8 4.3571 -3.9934 2.2593 10 7 3.9444 -3.4204 4.3655 11 6 4.7338 -4.5458 4.8722 12 6 4.7169 -4.5328 6.4020 13 1 5.1430 -3.5979 6.7659 14 6 5.5320 -5.7156 6.9373 15 8 5.3583 -5.8044 8.3536 16 6 4.0128 -6.0608 8.7634 17 6 3.1199 -4.8956 8.3215 18 7 3.3328 -4.6672 6.8835 19 6 2.2743 -4.5816 6.0190 20 1 2.3842 -4.9113 4.9965 21 6 1.0600 -4.0711 6.4570 22 7 0.9801 -3.4769 7.6287 23 14 -0.4606 -4.2274 5.3835 24 1 -0.1076 -4.9317 4.1246 25 1 -1.5007 -5.0012 6.1080 26 1 -0.9827 -2.8743 5.0646 27 6 2.8043 -1.7928 1.2165 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.1722 0.5071 2.7976 36 1 3.5135 -2.8119 4.9861 37 1 4.3053 -5.4812 4.5124 38 1 5.7611 -4.4570 4.5191 39 1 5.1862 -6.6375 6.4697 40 1 6.5869 -5.5640 6.7087 41 1 3.9749 -6.1575 9.8484 42 1 3.6610 -6.9840 8.3030 43 1 3.3856 -3.9976 8.8792 44 1 2.0744 -5.1446 8.5028 45 1 0.1317 -3.1198 7.9346 46 1 3.1872 -2.3260 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051042734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:33 Heat of formation + Delta-G solvation = -12.634271 kcal Electronic energy + Delta-G solvation = -28360.287092 eV Core-core repulsion = 24479.230297 eV Total energy + Delta-G solvation = -3881.056795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.18723 -40.62706 -39.70122 -36.96462 -36.86054 -35.25913 -33.28034 -32.26848 -31.91462 -30.57965 -28.98115 -28.21666 -27.15376 -25.23244 -24.22594 -24.00587 -22.98429 -21.49224 -21.35592 -20.63644 -18.83624 -18.22568 -17.59230 -17.31330 -17.17343 -16.57229 -16.47539 -16.24714 -15.98197 -15.54148 -15.34823 -15.23056 -15.04947 -14.90662 -14.79137 -14.55753 -14.21009 -13.95447 -13.51018 -13.19084 -13.13593 -13.08674 -12.90717 -12.75314 -12.48592 -12.39245 -12.16909 -12.14172 -11.99717 -11.85057 -11.32481 -11.23809 -10.98984 -10.72675 -10.63037 -10.54536 -9.92151 -9.50791 -8.59226 -7.86009 -5.35231 0.63024 1.36255 1.40080 1.47567 1.49703 1.68626 2.41918 2.50295 2.66525 3.05186 3.31689 3.45179 3.52376 3.59419 3.82256 3.93277 4.04135 4.09942 4.16693 4.24640 4.34315 4.46419 4.49776 4.59912 4.64607 4.65623 4.66045 4.67685 4.76184 4.80899 4.84288 5.01847 5.03086 5.12234 5.22517 5.24790 5.31117 5.51568 5.59508 5.66048 5.71386 6.14968 6.31123 6.39406 6.66954 6.97687 7.14130 7.37188 7.78496 8.33782 9.19318 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.004057 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.308653 B = 6900.065174 C = 8051.272636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 C -0.158 4.158 4 N -0.443 5.443 5 C 0.188 3.812 6 N -0.498 5.498 7 C -0.098 4.098 8 C 0.589 3.411 9 O -0.594 6.594 10 N -0.686 5.686 11 C 0.140 3.860 12 C 0.125 3.875 13 H 0.032 0.968 14 C 0.060 3.940 15 O -0.396 6.396 16 C 0.047 3.953 17 C 0.150 3.850 18 N -0.606 5.606 19 C -0.236 4.236 20 H 0.062 0.938 21 C -0.027 4.027 22 N -0.925 5.925 23 Si 0.946 3.054 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.292 1.292 27 C 0.043 3.957 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.235 0.765 36 H 0.413 0.587 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.004 0.996 44 H 0.066 0.934 45 H 0.249 0.751 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 8.343 -14.458 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 C -0.216 4.216 4 N -0.125 5.125 5 C -0.096 4.096 6 N -0.217 5.217 7 C -0.226 4.226 8 C 0.377 3.623 9 O -0.477 6.477 10 N -0.334 5.334 11 C 0.016 3.984 12 C 0.018 3.982 13 H 0.050 0.950 14 C -0.018 4.018 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.024 3.976 18 N -0.332 5.332 19 C -0.366 4.366 20 H 0.080 0.920 21 C -0.223 4.223 22 N -0.571 5.571 23 Si 0.776 3.224 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.219 1.219 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.251 0.749 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.975 7.979 -14.007 16.241 hybrid contribution -1.599 0.195 -0.765 1.783 sum 0.377 8.174 -14.773 16.888 Atomic orbital electron populations 1.22207 0.92179 1.02815 1.04820 1.21955 0.96270 0.94895 0.84989 1.22174 1.01670 0.92933 1.04796 1.45934 1.36398 1.21228 1.08930 1.25557 1.03208 1.01838 0.79016 1.70664 1.11802 1.04910 1.34329 1.20579 1.09139 1.00937 0.91947 1.17283 0.79453 0.83213 0.82351 1.90671 1.51547 1.48120 1.57347 1.45904 1.51030 1.30016 1.06498 1.21177 0.95128 0.89249 0.92812 1.21568 0.87038 0.97325 0.92222 0.95031 1.22969 1.00749 0.96811 0.81308 1.87799 1.28097 1.92900 1.22701 1.23212 0.82286 0.97396 1.00160 1.21245 0.98614 0.93979 0.83742 1.44314 1.00427 1.84263 1.04153 1.19186 0.89885 1.33631 0.93855 0.92014 1.25515 1.00784 0.98114 0.97922 1.70094 1.24716 1.41348 1.20956 0.85528 0.81442 0.76783 0.78609 1.21189 1.21574 1.21893 1.22762 0.97188 0.91119 0.98766 0.91590 0.87543 0.93270 0.86202 0.92516 0.87768 0.91449 0.74874 0.74926 0.92975 0.89926 0.93013 0.86269 0.87608 0.93666 0.97750 0.91544 0.94163 0.77848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.24 71.98 0.67 -1.07 16 2 C 0.12 1.45 3.57 44.99 0.16 1.61 16 3 C -0.16 -1.37 9.24 71.98 0.67 -0.70 16 4 N -0.44 -9.92 2.59 -505.87 -1.31 -11.23 16 5 C 0.19 5.16 11.53 180.10 2.08 7.23 16 6 N -0.50 -19.11 11.01 -188.81 -2.08 -21.19 16 7 C -0.10 -3.76 6.98 40.50 0.28 -3.48 16 8 C 0.59 25.62 7.81 86.63 0.68 26.30 16 9 O -0.59 -27.06 16.88 -4.12 -0.07 -27.13 16 10 N -0.69 -30.34 3.77 -466.47 -1.76 -32.10 16 11 C 0.14 5.67 4.45 86.38 0.38 6.05 16 12 C 0.12 5.19 3.21 44.96 0.14 5.34 16 13 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 14 C 0.06 2.11 6.29 72.08 0.45 2.57 16 15 O -0.40 -15.23 10.74 -148.98 -1.60 -16.83 16 16 C 0.05 1.83 6.98 72.08 0.50 2.34 16 17 C 0.15 7.21 5.38 86.35 0.46 7.68 16 18 N -0.61 -29.98 3.03 -673.74 -2.04 -32.02 16 19 C -0.24 -12.71 7.06 84.03 0.59 -12.12 16 20 H 0.06 3.47 5.81 -2.91 -0.02 3.45 16 21 C -0.03 -1.50 5.06 84.86 0.43 -1.07 16 22 N -0.93 -53.86 11.13 21.65 0.24 -53.62 16 23 Si 0.95 47.13 29.57 68.60 2.03 49.16 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 27 C 0.04 1.23 11.22 83.72 0.94 2.17 16 28 H 0.07 0.75 7.94 -2.39 -0.02 0.73 16 29 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 1.06 8.07 -2.38 -0.02 1.04 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.07 0.61 7.94 -2.39 -0.02 0.59 16 35 H 0.24 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.41 20.14 7.03 -92.70 -0.65 19.49 16 37 H 0.05 2.25 7.57 -2.39 -0.02 2.23 16 38 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.07 3.54 6.33 -2.39 -0.02 3.52 16 45 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 46 H 0.20 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -74.55 372.70 2.18 -72.37 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.33 Total: 29.75 kcal Atomic # 6 Polarization: 34.41 SS G_CDS: 8.44 Total: 42.84 kcal Atomic # 7 Polarization: -143.21 SS G_CDS: -6.95 Total: -150.16 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -1.67 Total: -43.96 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -74.55 2.18 -72.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051042734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.733 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds