Wall clock time and date at job start Tue Mar 31 2020 13:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47014 * 2 1 4 4 N 1.46500 * 109.47110 * 120.00341 * 2 1 3 5 5 C 1.35849 * 126.13689 * 299.97169 * 4 2 1 6 6 N 1.30165 * 109.00522 * 180.02562 * 5 4 2 7 7 C 1.35754 * 108.86710 * 0.02562 * 6 5 4 8 8 C 1.47326 * 126.23574 * 179.97438 * 7 6 5 9 9 O 1.21624 * 119.99988 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00222 * 0.30330 * 8 7 6 11 11 C 1.46496 * 120.00358 * 179.72398 * 10 8 7 12 12 C 1.52999 * 109.47167 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.67629 * 59.17197 * 12 11 10 14 14 C 1.53300 * 109.68179 * 179.68310 * 12 11 10 15 15 O 1.42963 * 109.22292 * 172.02608 * 14 12 11 16 16 C 1.42965 * 114.16652 * 297.42062 * 15 14 12 17 17 C 1.53298 * 109.22141 * 62.57998 * 16 15 14 18 18 N 1.47142 * 109.68456 * 298.64983 * 12 11 10 19 19 C 1.36944 * 120.98028 * 9.71508 * 18 12 11 20 20 H 1.07997 * 119.99891 * 328.45768 * 19 18 12 21 21 C 1.38810 * 120.00064 * 148.47099 * 19 18 12 22 22 N 1.31621 * 119.99846 * 349.21562 * 21 19 18 23 23 Si 1.86799 * 119.99966 * 169.22591 * 21 19 18 24 24 H 1.48501 * 109.47218 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47200 * 119.99523 * 23 21 19 26 26 H 1.48508 * 109.46941 * 239.99296 * 23 21 19 27 27 C 1.35380 * 126.13489 * 120.29093 * 4 2 1 28 28 H 1.08998 * 109.46609 * 299.99333 * 1 2 3 29 29 H 1.08997 * 109.46855 * 59.99826 * 1 2 3 30 30 H 1.09003 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46903 * 239.99982 * 2 1 3 32 32 H 1.09001 * 109.46984 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47655 * 300.00315 * 3 2 1 34 34 H 1.09007 * 109.46961 * 60.00571 * 3 2 1 35 35 H 1.08009 * 125.49374 * 0.02562 * 5 4 2 36 36 H 0.97004 * 119.99485 * 359.72476 * 10 8 7 37 37 H 1.08997 * 109.47187 * 299.99765 * 11 10 8 38 38 H 1.08998 * 109.47181 * 59.99729 * 11 10 8 39 39 H 1.09001 * 109.51371 * 291.95108 * 14 12 11 40 40 H 1.09005 * 109.51118 * 52.05085 * 14 12 11 41 41 H 1.08996 * 109.51147 * 182.50315 * 16 15 14 42 42 H 1.08996 * 109.51113 * 302.66200 * 16 15 14 43 43 H 1.09005 * 109.68001 * 67.42187 * 17 16 15 44 44 H 1.08993 * 109.68073 * 187.97298 * 17 16 15 45 45 H 0.97004 * 119.99676 * 180.02562 * 22 21 19 46 46 H 1.08001 * 126.56231 * 359.96665 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7687 -0.3367 2.4837 6 7 2.3644 -1.1785 3.2779 7 6 3.0180 -2.1023 2.5280 8 6 3.8168 -3.2304 3.0375 9 8 4.3571 -3.9934 2.2595 10 7 3.9444 -3.4204 4.3657 11 6 4.7338 -4.5456 4.8723 12 6 4.7179 -4.5319 6.4022 13 1 3.6907 -4.6055 6.7592 14 6 5.5363 -5.7125 6.9376 15 8 5.6713 -5.5871 8.3553 16 6 6.3808 -4.4189 8.7746 17 6 5.6056 -3.1721 8.3332 18 7 5.3252 -3.2848 6.8930 19 6 5.6220 -2.2598 6.0346 20 1 5.9047 -2.4745 5.0146 21 6 5.5597 -0.9451 6.4756 22 7 5.0162 -0.6672 7.6417 23 14 6.2471 0.4296 5.4140 24 1 6.7997 -0.1424 4.1600 25 1 5.1633 1.3900 5.0850 26 1 7.3252 1.1342 6.1535 27 6 2.8045 -1.7927 1.2166 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.1721 0.5072 2.7976 36 1 3.5134 -2.8119 4.9862 37 1 4.3054 -5.4811 4.5126 38 1 5.7611 -4.4570 4.5191 39 1 5.0258 -6.6462 6.7016 40 1 6.5235 -5.7105 6.4754 41 1 6.4777 -4.4219 9.8602 42 1 7.3713 -4.4116 8.3198 43 1 4.6679 -3.1083 8.8854 44 1 6.2047 -2.2814 8.5221 45 1 4.9724 0.2516 7.9497 46 1 3.1873 -2.3259 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051042735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:37 Heat of formation + Delta-G solvation = 8.600583 kcal Electronic energy + Delta-G solvation = -28340.132973 eV Core-core repulsion = 24459.996991 eV Total energy + Delta-G solvation = -3880.135982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.05329 -38.96739 -38.06866 -36.11114 -35.16545 -33.42018 -31.56574 -30.96252 -30.32327 -29.32887 -27.73296 -27.09906 -25.57857 -23.34123 -23.17584 -22.71501 -21.35638 -20.39482 -19.61732 -19.15817 -17.52935 -16.73153 -15.88621 -15.78996 -15.66019 -15.40222 -14.97696 -14.65007 -14.51460 -14.17887 -13.93637 -13.79048 -13.74097 -13.67267 -13.18533 -13.12502 -12.79719 -12.68596 -12.58107 -12.36841 -11.84300 -11.69146 -11.60525 -11.45645 -10.94299 -10.78140 -10.62807 -10.31025 -10.13637 -9.94980 -9.92413 -9.62700 -9.57931 -9.45611 -8.88181 -8.55307 -8.43045 -8.03148 -6.59140 -5.77632 -3.26235 1.88469 2.62300 2.76521 3.38251 3.46096 3.49938 3.97196 4.14267 4.19878 4.47764 4.48953 4.58623 4.61954 4.73806 4.77462 5.07913 5.21608 5.25992 5.27532 5.36177 5.42093 5.47186 5.59803 5.71613 5.72125 5.73627 5.83707 5.97290 6.11802 6.19381 6.21657 6.23834 6.32445 6.42126 6.60987 6.69546 6.87361 7.16600 7.16986 7.28635 7.58057 7.85196 7.94782 8.03082 8.41949 8.51163 9.01727 9.19533 9.79629 10.38160 11.29838 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.004041 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.096271 B = 6927.359823 C = 8075.234641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 C -0.165 4.165 4 N -0.456 5.456 5 C 0.180 3.820 6 N -0.446 5.446 7 C -0.048 4.048 8 C 0.594 3.406 9 O -0.572 6.572 10 N -0.678 5.678 11 C 0.135 3.865 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.057 3.943 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.072 0.928 21 C 0.016 3.984 22 N -0.899 5.899 23 Si 0.897 3.103 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.291 1.291 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.204 0.796 36 H 0.424 0.576 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.253 0.747 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 1.280 -12.639 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.024 3.976 3 C -0.223 4.223 4 N -0.140 5.140 5 C -0.103 4.103 6 N -0.164 5.164 7 C -0.178 4.178 8 C 0.380 3.620 9 O -0.453 6.453 10 N -0.328 5.328 11 C 0.011 3.989 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.312 6.312 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.183 4.183 22 N -0.543 5.543 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.218 1.218 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.221 0.779 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.603 0.854 -12.165 14.371 hybrid contribution 0.262 1.554 -1.222 1.994 sum -7.341 2.408 -13.387 15.456 Atomic orbital electron populations 1.22179 0.93044 1.03380 1.03451 1.21499 0.95588 0.94126 0.86411 1.22199 1.02495 0.94142 1.03457 1.45629 1.38075 1.22269 1.08040 1.25024 1.04389 1.02335 0.78573 1.70766 1.09875 1.03527 1.32218 1.20699 1.06713 1.00148 0.90244 1.16886 0.79718 0.82673 0.82757 1.90714 1.50362 1.47073 1.57164 1.45821 1.50582 1.30114 1.06291 1.21178 0.96145 0.88171 0.93404 1.21424 0.96001 0.89170 0.91647 0.94143 1.22864 0.99334 0.97886 0.82174 1.87793 1.77551 1.44155 1.21655 1.23355 0.94981 0.87528 0.98437 1.21396 0.97618 0.94909 0.84133 1.44092 1.70664 1.12947 1.03929 1.19203 1.39817 0.84412 0.94596 0.91022 1.25066 0.98845 0.97381 0.97050 1.69989 1.45906 1.18287 1.20128 0.86284 0.78248 0.82661 0.80067 1.20432 1.21504 1.21837 1.22497 0.98358 0.91175 0.99675 0.91401 0.90458 0.91583 0.88088 0.91515 0.90421 0.91375 0.77942 0.73715 0.92326 0.91472 0.89945 0.93511 0.90308 0.94147 0.95301 0.89075 0.93692 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.24 37.16 0.34 -0.62 16 2 C 0.13 0.95 3.57 -67.93 -0.24 0.71 16 3 C -0.17 -1.12 9.24 37.16 0.34 -0.78 16 4 N -0.46 -5.50 2.59 -111.24 -0.29 -5.79 16 5 C 0.18 2.55 11.53 -89.91 -1.04 1.52 16 6 N -0.45 -8.42 11.01 -11.03 -0.12 -8.54 16 7 C -0.05 -0.92 6.98 -83.09 -0.58 -1.50 16 8 C 0.59 12.62 7.81 -12.57 -0.10 12.53 16 9 O -0.57 -12.89 16.88 5.26 0.09 -12.80 16 10 N -0.68 -14.59 3.81 -61.42 -0.23 -14.82 16 11 C 0.14 2.73 4.44 -4.04 -0.02 2.71 16 12 C 0.12 2.61 3.20 -67.43 -0.22 2.39 16 13 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.06 1.05 6.29 37.31 0.23 1.28 16 15 O -0.39 -7.94 10.74 -35.23 -0.38 -8.32 16 16 C 0.03 0.70 6.99 37.31 0.26 0.96 16 17 C 0.14 3.44 5.38 -3.52 -0.02 3.42 16 18 N -0.59 -14.40 3.03 -164.29 -0.50 -14.90 16 19 C -0.25 -6.63 7.09 -15.06 -0.11 -6.74 16 20 H 0.07 1.96 5.84 -52.49 -0.31 1.65 16 21 C 0.02 0.44 5.06 -17.43 -0.09 0.35 16 22 N -0.90 -25.45 11.17 55.49 0.62 -24.83 16 23 Si 0.90 22.37 29.57 -169.99 -5.03 17.34 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.02 0.31 11.22 -16.64 -0.19 0.13 16 28 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 35 H 0.20 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.42 9.89 7.10 -40.82 -0.29 9.60 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.36 6.36 -51.93 -0.33 2.03 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -33.32 372.88 -8.82 -42.13 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.19 Total: 8.56 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: -1.41 Total: 16.36 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.52 Total: -68.89 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.29 Total: -21.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.32 -8.82 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051042735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.734 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds