Wall clock time and date at job start Tue Mar 31 2020 13:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47014 * 2 1 4 4 N 1.46500 * 109.47110 * 120.00341 * 2 1 3 5 5 C 1.35849 * 126.13689 * 299.97169 * 4 2 1 6 6 N 1.30165 * 109.00522 * 180.02562 * 5 4 2 7 7 C 1.35754 * 108.86710 * 0.02562 * 6 5 4 8 8 C 1.47326 * 126.23574 * 179.97438 * 7 6 5 9 9 O 1.21624 * 119.99988 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00222 * 0.30330 * 8 7 6 11 11 C 1.46496 * 120.00358 * 179.72398 * 10 8 7 12 12 C 1.52999 * 109.47167 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.67629 * 59.17197 * 12 11 10 14 14 C 1.53300 * 109.68179 * 179.68310 * 12 11 10 15 15 O 1.42963 * 109.22292 * 172.02608 * 14 12 11 16 16 C 1.42965 * 114.16652 * 297.42062 * 15 14 12 17 17 C 1.53298 * 109.22141 * 62.57998 * 16 15 14 18 18 N 1.47142 * 109.68456 * 298.64983 * 12 11 10 19 19 C 1.36944 * 120.98028 * 9.71508 * 18 12 11 20 20 H 1.07997 * 119.99891 * 328.45768 * 19 18 12 21 21 C 1.38810 * 120.00064 * 148.47099 * 19 18 12 22 22 N 1.31621 * 119.99846 * 349.21562 * 21 19 18 23 23 Si 1.86799 * 119.99966 * 169.22591 * 21 19 18 24 24 H 1.48501 * 109.47218 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47200 * 119.99523 * 23 21 19 26 26 H 1.48508 * 109.46941 * 239.99296 * 23 21 19 27 27 C 1.35380 * 126.13489 * 120.29093 * 4 2 1 28 28 H 1.08998 * 109.46609 * 299.99333 * 1 2 3 29 29 H 1.08997 * 109.46855 * 59.99826 * 1 2 3 30 30 H 1.09003 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46903 * 239.99982 * 2 1 3 32 32 H 1.09001 * 109.46984 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47655 * 300.00315 * 3 2 1 34 34 H 1.09007 * 109.46961 * 60.00571 * 3 2 1 35 35 H 1.08009 * 125.49374 * 0.02562 * 5 4 2 36 36 H 0.97004 * 119.99485 * 359.72476 * 10 8 7 37 37 H 1.08997 * 109.47187 * 299.99765 * 11 10 8 38 38 H 1.08998 * 109.47181 * 59.99729 * 11 10 8 39 39 H 1.09001 * 109.51371 * 291.95108 * 14 12 11 40 40 H 1.09005 * 109.51118 * 52.05085 * 14 12 11 41 41 H 1.08996 * 109.51147 * 182.50315 * 16 15 14 42 42 H 1.08996 * 109.51113 * 302.66200 * 16 15 14 43 43 H 1.09005 * 109.68001 * 67.42187 * 17 16 15 44 44 H 1.08993 * 109.68073 * 187.97298 * 17 16 15 45 45 H 0.97004 * 119.99676 * 180.02562 * 22 21 19 46 46 H 1.08001 * 126.56231 * 359.96665 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7687 -0.3367 2.4837 6 7 2.3644 -1.1785 3.2779 7 6 3.0180 -2.1023 2.5280 8 6 3.8168 -3.2304 3.0375 9 8 4.3571 -3.9934 2.2595 10 7 3.9444 -3.4204 4.3657 11 6 4.7338 -4.5456 4.8723 12 6 4.7179 -4.5319 6.4022 13 1 3.6907 -4.6055 6.7592 14 6 5.5363 -5.7125 6.9376 15 8 5.6713 -5.5871 8.3553 16 6 6.3808 -4.4189 8.7746 17 6 5.6056 -3.1721 8.3332 18 7 5.3252 -3.2848 6.8930 19 6 5.6220 -2.2598 6.0346 20 1 5.9047 -2.4745 5.0146 21 6 5.5597 -0.9451 6.4756 22 7 5.0162 -0.6672 7.6417 23 14 6.2471 0.4296 5.4140 24 1 6.7997 -0.1424 4.1600 25 1 5.1633 1.3900 5.0850 26 1 7.3252 1.1342 6.1535 27 6 2.8045 -1.7927 1.2166 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.1721 0.5072 2.7976 36 1 3.5134 -2.8119 4.9862 37 1 4.3054 -5.4811 4.5126 38 1 5.7611 -4.4570 4.5191 39 1 5.0258 -6.6462 6.7016 40 1 6.5235 -5.7105 6.4754 41 1 6.4777 -4.4219 9.8602 42 1 7.3713 -4.4116 8.3198 43 1 4.6679 -3.1083 8.8854 44 1 6.2047 -2.2814 8.5221 45 1 4.9724 0.2516 7.9497 46 1 3.1873 -2.3259 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051042735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:36 Heat of formation + Delta-G solvation = -13.324944 kcal Electronic energy + Delta-G solvation = -28341.083736 eV Core-core repulsion = 24459.996991 eV Total energy + Delta-G solvation = -3881.086744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.18790 -40.62252 -39.70312 -36.96201 -36.85742 -35.26327 -33.27969 -32.27218 -31.91619 -30.58000 -28.97504 -28.21533 -27.15739 -25.23429 -24.22778 -24.00588 -22.98196 -21.49532 -21.35848 -20.63328 -18.83166 -18.22690 -17.59057 -17.31510 -17.17320 -16.57525 -16.47620 -16.24754 -15.98475 -15.54222 -15.34845 -15.23343 -15.04787 -14.90672 -14.79076 -14.55900 -14.20733 -13.95424 -13.50727 -13.19165 -13.13510 -13.08839 -12.90944 -12.75354 -12.48894 -12.39152 -12.16847 -12.14242 -11.99877 -11.85384 -11.32364 -11.23830 -10.98944 -10.72834 -10.62950 -10.54656 -9.92678 -9.50985 -8.58879 -7.86184 -5.35674 0.62943 1.36225 1.40058 1.47595 1.49713 1.68673 2.42060 2.50366 2.65995 3.05096 3.31603 3.45166 3.52214 3.59417 3.82298 3.93326 4.04076 4.09999 4.16667 4.24709 4.34220 4.46371 4.49762 4.59783 4.64592 4.65628 4.66115 4.67714 4.76151 4.81013 4.84355 5.01753 5.03107 5.12169 5.22595 5.24815 5.30756 5.51494 5.59311 5.65694 5.71266 6.14972 6.31153 6.39385 6.66730 6.97557 7.14048 7.37014 7.78361 8.33911 9.19207 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.004041 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.096271 B = 6927.359823 C = 8075.234641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 C -0.163 4.163 4 N -0.443 5.443 5 C 0.188 3.812 6 N -0.499 5.499 7 C -0.098 4.098 8 C 0.590 3.410 9 O -0.594 6.594 10 N -0.686 5.686 11 C 0.141 3.859 12 C 0.125 3.875 13 H 0.032 0.968 14 C 0.060 3.940 15 O -0.396 6.396 16 C 0.047 3.953 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.236 4.236 20 H 0.061 0.939 21 C -0.026 4.026 22 N -0.925 5.925 23 Si 0.946 3.054 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.043 3.957 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.235 0.765 36 H 0.413 0.587 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.045 0.955 43 H 0.005 0.995 44 H 0.065 0.935 45 H 0.249 0.751 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 1.277 -14.490 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 C -0.220 4.220 4 N -0.125 5.125 5 C -0.096 4.096 6 N -0.217 5.217 7 C -0.226 4.226 8 C 0.377 3.623 9 O -0.477 6.477 10 N -0.334 5.334 11 C 0.017 3.983 12 C 0.019 3.981 13 H 0.050 0.950 14 C -0.019 4.019 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.366 4.366 20 H 0.079 0.921 21 C -0.223 4.223 22 N -0.571 5.571 23 Si 0.776 3.224 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.215 1.215 27 C -0.098 4.098 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.250 0.750 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.287 0.842 -14.041 16.325 hybrid contribution 0.384 1.573 -0.758 1.787 sum -7.903 2.415 -14.798 16.949 Atomic orbital electron populations 1.22173 0.91406 1.03183 1.04797 1.21955 0.96810 0.94359 0.84984 1.22210 1.01350 0.93646 1.04823 1.45936 1.36459 1.21156 1.08935 1.25561 1.03150 1.01873 0.79006 1.70655 1.11738 1.04996 1.34343 1.20576 1.09156 1.00925 0.91944 1.17282 0.79510 0.83139 0.82343 1.90670 1.51508 1.48139 1.57352 1.45878 1.50806 1.30265 1.06483 1.21174 0.95392 0.88967 0.92813 1.21564 0.95754 0.88651 0.92163 0.95048 1.22969 0.99535 0.98077 0.81270 1.87799 1.77509 1.43649 1.22535 1.23213 0.94213 0.85537 1.00087 1.21240 0.96546 0.96018 0.83747 1.44305 1.71133 1.13676 1.04020 1.19166 1.38188 0.84993 0.94234 0.92100 1.25525 0.99922 0.98895 0.97970 1.70098 1.47608 1.18121 1.21245 0.85534 0.77480 0.80786 0.78592 1.21142 1.21926 1.21528 1.22766 0.97060 0.91246 0.98767 0.91439 0.87768 0.92528 0.86212 0.93265 0.87549 0.91581 0.74845 0.74991 0.89936 0.92990 0.86279 0.93004 0.87587 0.93653 0.97732 0.91640 0.94165 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.24 71.98 0.67 -0.69 16 2 C 0.12 1.44 3.57 44.99 0.16 1.60 16 3 C -0.16 -1.72 9.24 71.98 0.67 -1.05 16 4 N -0.44 -9.88 2.59 -505.85 -1.31 -11.19 16 5 C 0.19 5.14 11.53 180.10 2.08 7.21 16 6 N -0.50 -19.07 11.01 -188.81 -2.08 -21.14 16 7 C -0.10 -3.75 6.98 40.51 0.28 -3.47 16 8 C 0.59 25.62 7.81 86.63 0.68 26.30 16 9 O -0.59 -27.06 16.88 -4.11 -0.07 -27.13 16 10 N -0.69 -30.33 3.81 -466.48 -1.78 -32.10 16 11 C 0.14 5.68 4.44 86.38 0.38 6.06 16 12 C 0.12 5.20 3.20 44.97 0.14 5.35 16 13 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 14 C 0.06 2.11 6.29 72.08 0.45 2.56 16 15 O -0.40 -15.22 10.74 -148.98 -1.60 -16.82 16 16 C 0.05 1.83 6.99 72.08 0.50 2.34 16 17 C 0.15 7.23 5.38 86.35 0.46 7.69 16 18 N -0.61 -29.97 3.03 -673.70 -2.04 -32.02 16 19 C -0.24 -12.74 7.09 84.03 0.60 -12.14 16 20 H 0.06 3.42 5.84 -2.91 -0.02 3.40 16 21 C -0.03 -1.48 5.06 84.86 0.43 -1.05 16 22 N -0.92 -53.87 11.17 21.65 0.24 -53.63 16 23 Si 0.95 47.10 29.57 68.60 2.03 49.13 16 24 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 27 C 0.04 1.23 11.22 83.72 0.94 2.17 16 28 H 0.07 0.61 7.94 -2.39 -0.02 0.59 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 1.05 8.07 -2.39 -0.02 1.03 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.74 7.94 -2.38 -0.02 0.72 16 35 H 0.24 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.41 20.09 7.10 -92.71 -0.66 19.43 16 37 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.05 2.25 7.52 -2.39 -0.02 2.23 16 39 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.07 3.48 6.36 -2.39 -0.02 3.47 16 45 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.20 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -74.61 372.88 2.16 -72.45 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.32 Total: 29.58 kcal Atomic # 6 Polarization: 34.43 SS G_CDS: 8.44 Total: 42.87 kcal Atomic # 7 Polarization: -143.11 SS G_CDS: -6.97 Total: -150.08 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.67 Total: -43.95 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -74.61 2.16 -72.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051042735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.127 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds