Wall clock time and date at job start Tue Mar 31 2020 13:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47025 * 2 1 4 4 N 1.46496 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.34261 * 125.75830 * 124.99966 * 4 3 2 6 6 C 1.38038 * 107.41776 * 179.97438 * 5 4 3 7 7 C 1.47440 * 126.41109 * 179.97438 * 6 5 4 8 8 O 1.21602 * 120.00030 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99726 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99654 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46559 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.67757 * 300.74664 * 11 10 9 13 13 C 1.53301 * 109.67650 * 180.23530 * 11 10 9 14 14 O 1.42964 * 109.26132 * 187.91123 * 13 11 10 15 15 C 1.43056 * 114.11265 * 62.54543 * 14 13 11 16 16 C 1.53288 * 109.25423 * 297.46094 * 15 14 13 17 17 N 1.47149 * 109.71685 * 61.28957 * 11 10 9 18 18 C 1.36939 * 120.97869 * 350.25104 * 17 11 10 19 19 H 1.07998 * 119.99928 * 31.06130 * 18 17 11 20 20 C 1.38811 * 119.99758 * 211.06053 * 18 17 11 21 21 N 1.31620 * 120.00330 * 10.82586 * 20 18 17 22 22 Si 1.86803 * 120.00105 * 190.82958 * 20 18 17 23 23 H 1.48498 * 109.47098 * 89.99357 * 22 20 18 24 24 H 1.48502 * 109.47210 * 210.00012 * 22 20 18 25 25 H 1.48508 * 109.46616 * 329.99666 * 22 20 18 26 26 C 1.41284 * 107.17406 * 0.23998 * 6 5 4 27 27 N 1.30451 * 108.02163 * 359.59449 * 26 6 5 28 28 H 1.09000 * 109.46722 * 60.00582 * 1 2 3 29 29 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46999 * 299.99959 * 1 2 3 31 31 H 1.08999 * 109.46925 * 239.99493 * 2 1 3 32 32 H 1.09000 * 109.46626 * 120.00199 * 2 1 3 33 33 H 1.08998 * 109.47199 * 60.00163 * 3 2 1 34 34 H 1.09003 * 109.46698 * 299.99789 * 3 2 1 35 35 H 1.08005 * 126.28502 * 359.97438 * 5 4 3 36 36 H 0.96998 * 120.00168 * 0.02562 * 9 7 6 37 37 H 1.09000 * 109.46882 * 60.00884 * 10 9 7 38 38 H 1.08993 * 109.47124 * 300.00470 * 10 9 7 39 39 H 1.08999 * 109.51133 * 307.85901 * 13 11 10 40 40 H 1.08998 * 109.51451 * 67.96210 * 13 11 10 41 41 H 1.08998 * 109.49545 * 177.52238 * 15 14 13 42 42 H 1.09003 * 109.49268 * 57.39186 * 15 14 13 43 43 H 1.08999 * 109.68170 * 292.57917 * 16 15 14 44 44 H 1.09000 * 109.68652 * 172.02723 * 16 15 14 45 45 H 0.96993 * 120.00431 * 180.02562 * 21 20 18 46 46 H 1.08003 * 125.98649 * 179.72911 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2892 2.0675 -0.8933 6 6 5.5996 1.8187 -0.5378 7 6 6.8034 2.3066 -1.2354 8 8 6.6918 3.0010 -2.2274 9 7 8.0275 1.9837 -0.7730 10 6 9.2237 2.4680 -1.4666 11 6 10.4729 1.9618 -0.7426 12 1 10.4698 2.3180 0.2875 13 6 11.7278 2.4708 -1.4612 14 8 12.8820 1.8470 -0.8933 15 6 12.9126 0.4249 -1.0461 16 6 11.7184 -0.1887 -0.3065 17 7 10.4937 0.4905 -0.7582 18 6 9.4053 -0.2254 -1.1803 19 1 8.7509 0.1824 -1.9365 20 6 9.1432 -1.4752 -0.6361 21 7 9.8050 -1.8825 0.4262 22 14 7.8511 -2.5792 -1.4115 23 1 8.4875 -3.4367 -2.4435 24 1 7.2392 -3.4361 -0.3644 25 1 6.7995 -1.7422 -2.0432 26 6 5.5713 1.0040 0.6162 27 7 4.3230 0.7914 0.9295 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.9559 2.6566 -1.7350 36 1 8.1165 1.4301 0.0185 37 1 9.2236 3.5580 -1.4729 38 1 9.2236 2.0987 -2.4920 39 1 11.6653 2.2247 -2.5212 40 1 11.8024 3.5516 -1.3421 41 1 13.8400 0.0340 -0.6278 42 1 12.8544 0.1715 -2.1047 43 1 11.8407 -0.0490 0.7676 44 1 11.6531 -1.2528 -0.5336 45 1 9.6221 -2.7559 0.8062 46 1 6.4323 0.6256 1.1471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051143328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:59 Heat of formation + Delta-G solvation = 18.711294 kcal Electronic energy + Delta-G solvation = -28091.238131 eV Core-core repulsion = 24211.540582 eV Total energy + Delta-G solvation = -3879.697549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.15811 -38.97801 -38.07038 -35.51634 -35.22906 -33.51541 -31.91491 -31.32598 -30.46525 -29.89721 -27.26233 -26.74229 -25.24872 -23.42252 -22.46469 -22.37915 -21.39917 -20.49897 -19.70357 -19.36655 -17.75952 -16.64993 -15.90612 -15.84685 -15.65951 -15.42778 -14.89056 -14.81823 -14.56505 -14.35690 -14.18601 -13.80035 -13.66708 -13.35284 -13.27450 -12.90128 -12.68661 -12.52280 -12.45572 -12.20688 -11.81333 -11.64600 -11.52293 -11.20378 -11.00838 -10.86880 -10.76529 -10.67423 -10.38095 -10.20925 -10.01550 -9.64022 -9.41730 -9.37285 -8.94387 -8.65195 -8.52264 -8.10561 -6.70602 -5.87864 -3.37431 1.76135 2.41483 2.50285 3.31809 3.40254 3.43221 3.89377 4.04203 4.30987 4.38722 4.55454 4.56688 4.77450 4.88264 4.99204 5.09220 5.17103 5.21850 5.30206 5.33118 5.50466 5.62067 5.64609 5.68259 5.75031 5.79017 5.86970 5.95906 5.99847 6.07488 6.17525 6.19317 6.28965 6.35984 6.55348 6.66400 6.80256 6.94341 7.09947 7.20425 7.51212 7.72331 7.74852 7.88747 8.30770 8.35817 8.95157 9.09089 9.69054 10.27926 11.18528 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.003813 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.102640 B = 7341.132529 C = 8549.912790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.133 3.867 4 N -0.368 5.368 5 C 0.116 3.884 6 C -0.280 4.280 7 C 0.589 3.411 8 O -0.575 6.575 9 N -0.691 5.691 10 C 0.138 3.862 11 C 0.125 3.875 12 H 0.042 0.958 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.075 0.925 20 C 0.012 3.988 21 N -0.900 5.900 22 Si 0.892 3.108 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.090 3.910 27 N -0.300 5.300 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.184 0.816 36 H 0.413 0.587 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.092 0.908 45 H 0.255 0.745 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 6.308 -0.239 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.012 3.988 4 N -0.147 5.147 5 C -0.035 4.035 6 C -0.294 4.294 7 C 0.376 3.624 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.014 3.986 11 C 0.018 3.982 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.312 6.312 15 C -0.043 4.043 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.092 0.908 20 C -0.187 4.187 21 N -0.544 5.544 22 Si 0.722 3.278 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.097 4.097 27 N -0.120 5.120 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.201 0.799 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.929 6.154 0.098 13.423 hybrid contribution -0.234 -0.906 -0.716 1.178 sum -12.163 5.248 -0.618 13.261 Atomic orbital electron populations 1.21706 0.94465 1.02506 1.02003 1.21822 0.96287 0.95435 1.04155 1.21836 0.73948 0.99136 1.03876 1.48547 1.06634 1.38608 1.20934 1.22882 0.90265 0.95855 0.94471 1.20359 0.93565 1.12450 1.03073 1.17179 0.82530 0.79485 0.83233 1.90692 1.87272 1.40719 1.26998 1.45747 1.04219 1.52252 1.31861 1.21138 0.83711 0.96875 0.96892 1.21433 0.92297 0.87353 0.97156 0.94084 1.22864 0.86556 0.96366 0.96532 1.87822 1.42047 1.20962 1.80325 1.23368 1.00374 0.80788 0.99795 1.21413 0.83047 0.98235 0.95457 1.44096 1.12302 0.98182 1.77086 1.19255 1.03639 0.99414 1.15958 0.90779 1.25085 0.98347 0.99492 0.95792 1.69972 1.43252 1.20078 1.21086 0.86426 0.81753 0.81002 0.78597 1.21469 1.21591 1.20178 1.24238 0.95242 0.95205 0.95064 1.77134 1.01911 1.19347 1.13623 0.92459 0.91956 0.92317 0.91253 0.90162 0.89574 0.88574 0.79928 0.74869 0.92332 0.91522 0.93514 0.89932 0.90300 0.94135 0.95262 0.88949 0.93481 0.78991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.60 16 2 C -0.14 -1.26 6.11 -26.73 -0.16 -1.43 16 3 C 0.13 1.20 6.49 -4.04 -0.03 1.17 16 4 N -0.37 -4.98 3.65 -60.81 -0.22 -5.20 16 5 C 0.12 1.68 11.25 -16.56 -0.19 1.49 16 6 C -0.28 -4.84 6.13 -105.07 -0.64 -5.48 16 7 C 0.59 11.44 7.81 -12.51 -0.10 11.34 16 8 O -0.57 -12.38 16.90 5.28 0.09 -12.29 16 9 N -0.69 -13.23 3.80 -61.38 -0.23 -13.47 16 10 C 0.14 2.57 4.44 -4.04 -0.02 2.56 16 11 C 0.12 2.42 3.20 -67.42 -0.22 2.21 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.06 0.99 6.28 37.31 0.23 1.22 16 14 O -0.39 -7.63 10.75 -35.23 -0.38 -8.01 16 15 C 0.03 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.25 5.38 -3.54 -0.02 3.23 16 17 N -0.59 -13.48 3.03 -164.31 -0.50 -13.98 16 18 C -0.25 -6.23 7.11 -15.06 -0.11 -6.34 16 19 H 0.07 1.88 5.81 -52.49 -0.31 1.58 16 20 C 0.01 0.32 5.06 -17.43 -0.09 0.23 16 21 N -0.90 -24.02 11.13 55.49 0.62 -23.40 16 22 Si 0.89 21.14 29.57 -169.99 -5.03 16.11 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.09 1.53 11.50 -16.98 -0.20 1.33 16 27 N -0.30 -4.89 12.33 30.86 0.38 -4.51 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.61 8.06 -51.93 -0.42 0.20 16 35 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16 36 H 0.41 8.16 6.33 -40.82 -0.26 7.90 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.19 3.14 7.50 -52.48 -0.39 2.74 16 LS Contribution 373.90 15.07 5.63 5.63 Total: -1.00 -30.96 373.90 -7.68 -38.64 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.15 Total: 8.61 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -0.90 Total: 11.86 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.05 Total: -60.56 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.29 Total: -20.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.96 -7.68 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051143328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.355 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds