Wall clock time and date at job start Tue Mar 31 2020 13:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 N 1.46499 * 109.47626 * 180.02562 * 3 2 1 5 5 C 1.34256 * 125.75855 * 125.00220 * 4 3 2 6 6 C 1.38044 * 107.41936 * 180.02562 * 5 4 3 7 7 C 1.47425 * 126.41278 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00565 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99859 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00094 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47197 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.71161 * 59.78998 * 11 10 9 13 13 C 1.53296 * 109.68452 * 180.32509 * 11 10 9 14 14 O 1.42959 * 109.22367 * 172.02076 * 13 11 10 15 15 C 1.42955 * 114.16871 * 297.41993 * 14 13 11 16 16 C 1.53293 * 109.22244 * 62.58437 * 15 14 13 17 17 N 1.47151 * 108.38345 * 307.69617 * 16 15 14 18 18 C 1.36941 * 120.98199 * 230.26480 * 17 16 15 19 19 H 1.07992 * 120.00338 * 149.01158 * 18 17 16 20 20 C 1.38816 * 119.99625 * 329.00524 * 18 17 16 21 21 N 1.31613 * 120.00064 * 348.98390 * 20 18 17 22 22 Si 1.86805 * 119.99536 * 168.98655 * 20 18 17 23 23 H 1.48502 * 109.47048 * 90.00355 * 22 20 18 24 24 H 1.48499 * 109.46796 * 209.99878 * 22 20 18 25 25 H 1.48496 * 109.47368 * 329.99726 * 22 20 18 26 26 C 1.41287 * 107.16750 * 0.24246 * 6 5 4 27 27 N 1.30446 * 108.02620 * 359.59149 * 26 6 5 28 28 H 1.09006 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46814 * 299.99458 * 1 2 3 30 30 H 1.08999 * 109.47455 * 59.99941 * 1 2 3 31 31 H 1.09009 * 109.47286 * 240.00270 * 2 1 3 32 32 H 1.08999 * 109.47455 * 120.00059 * 2 1 3 33 33 H 1.09000 * 109.46807 * 59.99962 * 3 2 1 34 34 H 1.08999 * 109.46946 * 300.00370 * 3 2 1 35 35 H 1.07998 * 126.28661 * 359.97333 * 5 4 3 36 36 H 0.96998 * 120.00034 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47242 * 59.99561 * 10 9 7 38 38 H 1.09005 * 109.46988 * 299.99571 * 10 9 7 39 39 H 1.09003 * 109.50670 * 52.09721 * 13 11 10 40 40 H 1.09002 * 109.51134 * 291.95110 * 13 11 10 41 41 H 1.08996 * 109.51810 * 302.65762 * 15 14 13 42 42 H 1.09005 * 109.55140 * 182.52888 * 15 14 13 43 43 H 1.08997 * 109.68529 * 187.96910 * 16 15 14 44 44 H 1.09000 * 109.71671 * 67.43291 * 16 15 14 45 45 H 0.97007 * 119.99636 * 180.02562 * 21 20 18 46 46 H 1.08004 * 125.98795 * 179.73883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2891 2.0677 -0.8933 6 6 5.5996 1.8181 -0.5384 7 6 6.8032 2.3057 -1.2362 8 8 6.6917 3.0007 -2.2278 9 7 8.0274 1.9812 -0.7751 10 6 9.2235 2.4662 -1.4681 11 6 10.4728 1.9577 -0.7460 12 1 10.4740 0.8677 -0.7367 13 6 11.7277 2.4692 -1.4626 14 8 12.8804 2.1477 -0.6806 15 6 12.9056 2.7679 0.6072 16 6 11.7112 2.2716 1.4299 17 7 10.4879 2.4651 0.6352 18 6 9.3938 3.0937 1.1672 19 1 8.7374 3.6672 0.5296 20 6 9.1283 2.9936 2.5260 21 7 9.7910 2.1285 3.2640 22 14 7.8303 4.0867 3.3070 23 1 6.5116 3.4061 3.2521 24 1 8.1924 4.3509 4.7228 25 1 7.7552 5.3721 2.5672 26 6 5.5713 1.0027 0.6151 27 7 4.3230 0.7905 0.9288 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9558 2.6568 -1.7348 36 1 8.1165 1.4265 0.0156 37 1 9.2242 3.5561 -1.4724 38 1 9.2228 2.0988 -2.4944 39 1 11.6613 3.5502 -1.5859 40 1 11.8073 1.9946 -2.4407 41 1 12.8436 3.8500 0.4914 42 1 13.8327 2.5090 1.1187 43 1 11.6412 2.8417 2.3562 44 1 11.8366 1.2134 1.6588 45 1 9.6052 2.0584 4.2136 46 1 6.4323 0.6236 1.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051143329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:02 Heat of formation + Delta-G solvation = 19.186590 kcal Electronic energy + Delta-G solvation = -28051.523661 eV Core-core repulsion = 24171.846723 eV Total energy + Delta-G solvation = -3879.676939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15445 -38.98195 -38.07273 -35.52854 -35.23577 -33.50680 -31.91966 -31.32749 -30.46446 -29.89525 -27.26395 -26.74657 -25.24704 -23.41863 -22.46468 -22.39075 -21.40096 -20.49824 -19.69618 -19.36713 -17.75870 -16.65164 -15.93572 -15.81717 -15.65124 -15.44606 -14.86954 -14.83746 -14.57266 -14.34116 -14.20128 -13.80273 -13.67254 -13.35069 -13.27087 -12.90439 -12.63838 -12.57819 -12.45767 -12.21553 -11.81675 -11.67040 -11.51543 -11.22220 -11.02129 -10.83582 -10.76407 -10.66719 -10.38004 -10.23473 -10.01308 -9.63471 -9.41058 -9.37209 -8.94078 -8.64834 -8.52158 -8.09928 -6.69918 -5.88038 -3.37252 1.76540 2.42118 2.50642 3.32330 3.40363 3.43502 3.89813 4.03789 4.30617 4.38918 4.53683 4.56640 4.75861 4.87785 4.99115 5.08738 5.17416 5.21948 5.30160 5.31863 5.50662 5.61142 5.64921 5.65246 5.75005 5.77425 5.87209 5.92761 5.99975 6.07707 6.17672 6.19379 6.29153 6.36102 6.55581 6.67079 6.80479 6.94726 7.10010 7.20657 7.51289 7.73135 7.75028 7.89315 8.30881 8.36173 8.95335 9.09130 9.69214 10.28214 11.18341 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003688 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.495874 B = 7589.389067 C = 8675.341659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.132 3.868 4 N -0.368 5.368 5 C 0.116 3.884 6 C -0.280 4.280 7 C 0.588 3.412 8 O -0.575 6.575 9 N -0.691 5.691 10 C 0.138 3.862 11 C 0.124 3.876 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.074 0.926 20 C 0.012 3.988 21 N -0.900 5.900 22 Si 0.892 3.108 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.091 3.909 27 N -0.300 5.300 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.184 0.816 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.029 0.971 45 H 0.255 0.745 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 -2.918 -6.730 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.011 3.989 4 N -0.147 5.147 5 C -0.035 4.035 6 C -0.295 4.295 7 C 0.375 3.625 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.014 3.986 11 C 0.017 3.983 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.092 0.908 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.722 3.278 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.096 4.096 27 N -0.120 5.120 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.201 0.799 36 H 0.252 0.748 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.869 -3.156 -6.454 13.874 hybrid contribution -0.259 0.966 0.622 1.178 sum -12.129 -2.190 -5.832 13.635 Atomic orbital electron populations 1.21710 0.94496 1.02467 1.02084 1.21803 0.96267 0.95407 1.03986 1.21845 0.73983 0.99130 1.03970 1.48543 1.06625 1.38702 1.20842 1.22882 0.90261 0.95744 0.94597 1.20357 0.93562 1.12513 1.03091 1.17182 0.82534 0.79665 0.83102 1.90693 1.87279 1.40373 1.27346 1.45776 1.04204 1.52744 1.31368 1.21136 0.83726 0.99639 0.94113 1.21437 0.92307 0.96808 0.87723 0.94107 1.22865 0.86563 0.99250 0.93608 1.87795 1.42056 1.72413 1.28885 1.23344 1.00358 0.96246 0.84340 1.21407 0.83097 0.99109 0.94524 1.44099 1.12048 1.67210 1.08303 1.19243 1.03259 1.23932 0.91913 0.90797 1.25088 0.98306 0.97586 0.97725 1.69978 1.43061 1.35054 1.06254 0.86444 0.81892 0.80894 0.78602 1.20925 1.21619 1.20549 1.24233 0.95234 0.95576 0.94595 1.77135 1.01931 1.19747 1.13183 0.91966 0.92289 0.92450 0.91320 0.90194 0.89585 0.88549 0.79918 0.74799 0.91527 0.92345 0.93503 0.89922 0.94145 0.90297 0.89014 0.95260 0.93484 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.14 6.11 -26.73 -0.16 -1.31 16 3 C 0.13 1.20 6.49 -4.04 -0.03 1.17 16 4 N -0.37 -5.01 3.65 -60.81 -0.22 -5.23 16 5 C 0.12 1.68 11.25 -16.56 -0.19 1.49 16 6 C -0.28 -4.86 6.13 -105.07 -0.64 -5.50 16 7 C 0.59 11.40 7.81 -12.52 -0.10 11.30 16 8 O -0.57 -12.34 16.90 5.27 0.09 -12.25 16 9 N -0.69 -13.24 3.76 -61.38 -0.23 -13.47 16 10 C 0.14 2.57 4.45 -4.04 -0.02 2.56 16 11 C 0.12 2.42 3.21 -67.42 -0.22 2.20 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.99 6.29 37.31 0.23 1.23 16 14 O -0.39 -7.63 10.74 -35.23 -0.38 -8.01 16 15 C 0.04 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.25 5.37 -3.54 -0.02 3.23 16 17 N -0.59 -13.49 3.03 -164.31 -0.50 -13.99 16 18 C -0.25 -6.26 7.06 -15.06 -0.11 -6.36 16 19 H 0.07 1.88 5.81 -52.49 -0.30 1.57 16 20 C 0.01 0.32 5.05 -17.43 -0.09 0.23 16 21 N -0.90 -24.00 11.14 55.49 0.62 -23.38 16 22 Si 0.89 21.14 29.57 -169.99 -5.03 16.11 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C 0.09 1.56 11.50 -16.98 -0.20 1.37 16 27 N -0.30 -4.95 12.33 30.86 0.38 -4.57 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.18 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.41 8.20 6.27 -40.82 -0.26 7.95 16 37 H 0.07 1.35 7.57 -51.93 -0.39 0.95 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.28 6.34 -51.93 -0.33 1.95 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.19 3.18 7.50 -52.48 -0.39 2.79 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -30.94 373.82 -7.68 -38.62 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.15 Total: 8.53 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.90 Total: 12.01 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.05 Total: -60.64 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.29 Total: -20.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.94 -7.68 -38.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051143329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.803 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds