Wall clock time and date at job start Tue Mar 31 2020 13:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 N 1.46499 * 109.47626 * 180.02562 * 3 2 1 5 5 C 1.34256 * 125.75855 * 125.00220 * 4 3 2 6 6 C 1.38044 * 107.41936 * 180.02562 * 5 4 3 7 7 C 1.47425 * 126.41278 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00565 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99859 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00094 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47197 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.71161 * 59.78998 * 11 10 9 13 13 C 1.53296 * 109.68452 * 180.32509 * 11 10 9 14 14 O 1.42959 * 109.22367 * 172.02076 * 13 11 10 15 15 C 1.42955 * 114.16871 * 297.41993 * 14 13 11 16 16 C 1.53293 * 109.22244 * 62.58437 * 15 14 13 17 17 N 1.47151 * 108.38345 * 307.69617 * 16 15 14 18 18 C 1.36941 * 120.98199 * 230.26480 * 17 16 15 19 19 H 1.07992 * 120.00338 * 149.01158 * 18 17 16 20 20 C 1.38816 * 119.99625 * 329.00524 * 18 17 16 21 21 N 1.31613 * 120.00064 * 348.98390 * 20 18 17 22 22 Si 1.86805 * 119.99536 * 168.98655 * 20 18 17 23 23 H 1.48502 * 109.47048 * 90.00355 * 22 20 18 24 24 H 1.48499 * 109.46796 * 209.99878 * 22 20 18 25 25 H 1.48496 * 109.47368 * 329.99726 * 22 20 18 26 26 C 1.41287 * 107.16750 * 0.24246 * 6 5 4 27 27 N 1.30446 * 108.02620 * 359.59149 * 26 6 5 28 28 H 1.09006 * 109.46654 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46814 * 299.99458 * 1 2 3 30 30 H 1.08999 * 109.47455 * 59.99941 * 1 2 3 31 31 H 1.09009 * 109.47286 * 240.00270 * 2 1 3 32 32 H 1.08999 * 109.47455 * 120.00059 * 2 1 3 33 33 H 1.09000 * 109.46807 * 59.99962 * 3 2 1 34 34 H 1.08999 * 109.46946 * 300.00370 * 3 2 1 35 35 H 1.07998 * 126.28661 * 359.97333 * 5 4 3 36 36 H 0.96998 * 120.00034 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47242 * 59.99561 * 10 9 7 38 38 H 1.09005 * 109.46988 * 299.99571 * 10 9 7 39 39 H 1.09003 * 109.50670 * 52.09721 * 13 11 10 40 40 H 1.09002 * 109.51134 * 291.95110 * 13 11 10 41 41 H 1.08996 * 109.51810 * 302.65762 * 15 14 13 42 42 H 1.09005 * 109.55140 * 182.52888 * 15 14 13 43 43 H 1.08997 * 109.68529 * 187.96910 * 16 15 14 44 44 H 1.09000 * 109.71671 * 67.43291 * 16 15 14 45 45 H 0.97007 * 119.99636 * 180.02562 * 21 20 18 46 46 H 1.08004 * 125.98795 * 179.73883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2891 2.0677 -0.8933 6 6 5.5996 1.8181 -0.5384 7 6 6.8032 2.3057 -1.2362 8 8 6.6917 3.0007 -2.2278 9 7 8.0274 1.9812 -0.7751 10 6 9.2235 2.4662 -1.4681 11 6 10.4728 1.9577 -0.7460 12 1 10.4740 0.8677 -0.7367 13 6 11.7277 2.4692 -1.4626 14 8 12.8804 2.1477 -0.6806 15 6 12.9056 2.7679 0.6072 16 6 11.7112 2.2716 1.4299 17 7 10.4879 2.4651 0.6352 18 6 9.3938 3.0937 1.1672 19 1 8.7374 3.6672 0.5296 20 6 9.1283 2.9936 2.5260 21 7 9.7910 2.1285 3.2640 22 14 7.8303 4.0867 3.3070 23 1 6.5116 3.4061 3.2521 24 1 8.1924 4.3509 4.7228 25 1 7.7552 5.3721 2.5672 26 6 5.5713 1.0027 0.6151 27 7 4.3230 0.7905 0.9288 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9558 2.6568 -1.7348 36 1 8.1165 1.4265 0.0156 37 1 9.2242 3.5561 -1.4724 38 1 9.2228 2.0988 -2.4944 39 1 11.6613 3.5502 -1.5859 40 1 11.8073 1.9946 -2.4407 41 1 12.8436 3.8500 0.4914 42 1 13.8327 2.5090 1.1187 43 1 11.6412 2.8417 2.3562 44 1 11.8366 1.2134 1.6588 45 1 9.6052 2.0584 4.2136 46 1 6.4323 0.6236 1.1456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051143329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:01 Heat of formation + Delta-G solvation = -1.023052 kcal Electronic energy + Delta-G solvation = -28052.400017 eV Core-core repulsion = 24171.846723 eV Total energy + Delta-G solvation = -3880.553294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.36116 -40.53661 -39.61541 -36.87656 -36.31933 -35.23271 -33.34385 -32.62673 -32.10677 -31.16507 -28.98327 -27.80944 -26.58820 -25.20178 -23.87384 -23.30931 -22.80324 -21.60334 -21.33575 -20.77331 -19.13251 -18.28768 -17.54668 -17.21450 -16.88520 -16.62938 -16.36402 -16.21960 -16.05489 -15.77540 -15.40749 -15.35719 -15.11862 -14.95851 -14.57721 -14.17696 -14.10001 -13.82237 -13.47909 -13.22258 -13.07407 -12.91835 -12.88153 -12.71163 -12.46484 -12.37119 -12.15537 -12.08031 -11.96353 -11.81954 -11.68102 -11.26575 -10.90551 -10.59841 -10.56745 -10.52534 -9.94508 -9.52831 -8.58161 -7.84957 -5.34403 0.57247 1.15574 1.39819 1.41034 1.45651 1.49707 2.41702 2.50139 2.60573 3.07570 3.31847 3.41990 3.49936 3.79658 3.88812 3.94198 4.09071 4.16285 4.25194 4.27397 4.32728 4.38272 4.50394 4.51401 4.58830 4.63673 4.68606 4.69494 4.74149 4.81095 4.85828 5.05004 5.10325 5.14737 5.16071 5.34607 5.34877 5.39170 5.63494 5.69725 5.74188 5.91730 6.33202 6.40656 6.49988 6.81199 7.14555 7.42913 7.79992 8.35875 9.19335 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.003688 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.495874 B = 7589.389067 C = 8675.341659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.119 3.881 4 N -0.357 5.357 5 C 0.134 3.866 6 C -0.313 4.313 7 C 0.589 3.411 8 O -0.599 6.599 9 N -0.694 5.694 10 C 0.144 3.856 11 C 0.125 3.875 12 H 0.037 0.963 13 C 0.058 3.942 14 O -0.398 6.398 15 C 0.047 3.953 16 C 0.149 3.851 17 N -0.604 5.604 18 C -0.237 4.237 19 H 0.068 0.932 20 C -0.024 4.024 21 N -0.924 5.924 22 Si 0.937 3.063 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.081 3.919 27 N -0.321 5.321 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.216 0.784 36 H 0.409 0.591 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.118 0.882 41 H 0.043 0.957 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.007 0.993 45 H 0.249 0.751 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 -2.429 -8.470 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.135 5.135 5 C -0.019 4.019 6 C -0.327 4.327 7 C 0.377 3.623 8 O -0.483 6.483 9 N -0.343 5.343 10 C 0.020 3.980 11 C 0.019 3.981 12 H 0.055 0.945 13 C -0.020 4.020 14 O -0.316 6.316 15 C -0.031 4.031 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.367 4.367 19 H 0.086 0.914 20 C -0.221 4.221 21 N -0.570 5.570 22 Si 0.768 3.232 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.209 1.209 26 C -0.106 4.106 27 N -0.141 5.141 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.232 0.768 36 H 0.246 0.754 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.025 0.975 45 H 0.059 0.941 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.129 -2.677 -8.200 15.709 hybrid contribution 0.031 0.787 1.103 1.355 sum -13.097 -1.890 -7.097 15.016 Atomic orbital electron populations 1.21677 0.92367 1.03000 1.03112 1.21739 0.97973 0.94638 1.02576 1.22360 0.71239 1.00088 1.06251 1.48932 1.08066 1.37033 1.19491 1.23324 0.89309 0.94560 0.94705 1.20332 0.94069 1.14402 1.03944 1.17429 0.82968 0.79078 0.82784 1.90664 1.87618 1.41586 1.28414 1.45812 1.04625 1.52665 1.31233 1.21111 0.83221 0.98611 0.95093 1.21570 0.93949 0.96491 0.86101 0.94525 1.22988 0.84800 0.99793 0.94465 1.87800 1.42608 1.72535 1.28681 1.23203 0.99652 0.96211 0.84045 1.21242 0.84649 0.97389 0.94384 1.44293 1.11775 1.67322 1.09617 1.19245 1.03036 1.22810 0.91626 0.91438 1.25458 0.99691 0.98672 0.98298 1.70080 1.44421 1.36516 1.05940 0.85743 0.80350 0.79567 0.77589 1.21493 1.22177 1.20941 1.24166 0.95496 0.96057 0.94897 1.77077 1.01955 1.20643 1.14431 0.91756 0.91828 0.90820 0.91862 0.92528 0.88740 0.84826 0.76787 0.75362 0.93099 0.90073 0.93195 0.86388 0.93827 0.87830 0.91629 0.97504 0.94138 0.79815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 71.98 0.71 -0.66 16 2 C -0.13 -1.97 6.11 30.59 0.19 -1.78 16 3 C 0.12 1.85 6.49 86.38 0.56 2.41 16 4 N -0.36 -9.10 3.65 -346.31 -1.26 -10.36 16 5 C 0.13 3.61 11.25 84.28 0.95 4.55 16 6 C -0.31 -10.70 6.13 -20.15 -0.12 -10.82 16 7 C 0.59 22.66 7.81 86.66 0.68 23.34 16 8 O -0.60 -25.20 16.90 -4.05 -0.07 -25.27 16 9 N -0.69 -26.67 3.76 -466.37 -1.75 -28.43 16 10 C 0.14 5.24 4.45 86.38 0.38 5.62 16 11 C 0.13 4.76 3.21 44.97 0.14 4.90 16 12 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 13 C 0.06 1.91 6.29 72.08 0.45 2.36 16 14 O -0.40 -14.56 10.74 -148.98 -1.60 -16.16 16 15 C 0.05 1.73 6.98 72.08 0.50 2.23 16 16 C 0.15 6.78 5.37 86.35 0.46 7.24 16 17 N -0.60 -27.65 3.03 -673.74 -2.04 -29.69 16 18 C -0.24 -11.79 7.06 84.03 0.59 -11.19 16 19 H 0.07 3.45 5.81 -2.91 -0.02 3.44 16 20 C -0.02 -1.27 5.05 84.86 0.43 -0.84 16 21 N -0.92 -50.57 11.14 21.65 0.24 -50.33 16 22 Si 0.94 44.29 29.57 68.60 2.03 46.32 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 26 C 0.08 2.82 11.50 85.65 0.99 3.80 16 27 N -0.32 -10.51 12.33 -56.28 -0.69 -11.20 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.13 1.12 8.06 -2.39 -0.02 1.10 16 35 H 0.22 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.41 16.57 6.27 -92.71 -0.58 15.99 16 37 H 0.05 2.02 7.57 -2.39 -0.02 2.00 16 38 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 43 H 0.07 3.33 6.34 -2.39 -0.02 3.31 16 44 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.25 13.52 8.31 -92.70 -0.77 12.75 16 46 H 0.18 6.45 7.50 -2.91 -0.02 6.42 16 Total: -1.00 -67.07 373.82 2.17 -64.90 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.40 Total: 29.04 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 6.92 Total: 31.17 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.51 Total: -130.00 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.67 Total: -41.43 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.07 2.17 -64.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051143329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.881 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds