Wall clock time and date at job start Tue Mar 31 2020 13:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 N 1.46500 * 109.46617 * 120.00114 * 2 1 3 5 5 C 1.35034 * 124.88354 * 275.01554 * 4 2 1 6 6 C 1.35362 * 107.23168 * 180.02562 * 5 4 2 7 7 C 1.41511 * 105.49920 * 0.02562 * 6 5 4 8 8 C 1.47711 * 126.51344 * 179.97438 * 7 6 5 9 9 O 1.21562 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99396 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99668 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47115 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.68113 * 300.77636 * 12 11 10 14 14 C 1.53300 * 109.68044 * 180.25933 * 12 11 10 15 15 O 1.42957 * 109.22037 * 187.97777 * 14 12 11 16 16 C 1.42965 * 114.16927 * 62.58111 * 15 14 12 17 17 C 1.53301 * 109.21958 * 297.41699 * 16 15 14 18 18 N 1.47153 * 109.67773 * 61.29400 * 12 11 10 19 19 C 1.36933 * 120.98451 * 350.23576 * 18 12 11 20 20 H 1.08005 * 120.00172 * 31.04252 * 19 18 12 21 21 C 1.38816 * 120.00087 * 211.04532 * 19 18 12 22 22 N 1.31622 * 119.99692 * 10.79747 * 21 19 18 23 23 Si 1.86799 * 120.00195 * 190.79419 * 21 19 18 24 24 H 1.48497 * 109.47127 * 89.99916 * 23 21 19 25 25 H 1.48499 * 109.47234 * 210.00099 * 23 21 19 26 26 H 1.48498 * 109.46875 * 329.99862 * 23 21 19 27 27 N 1.28461 * 124.88705 * 95.02765 * 4 2 1 28 28 H 1.09004 * 109.47050 * 60.00323 * 1 2 3 29 29 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47245 * 300.00437 * 1 2 3 31 31 H 1.09005 * 109.46939 * 239.99579 * 2 1 3 32 32 H 1.08995 * 109.46984 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46857 * 299.99795 * 3 2 1 34 34 H 1.08992 * 109.47379 * 59.99646 * 3 2 1 35 35 H 1.08008 * 126.38185 * 0.02562 * 5 4 2 36 36 H 1.07996 * 127.25030 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00493 * 359.97438 * 10 8 7 38 38 H 1.08992 * 109.47382 * 300.00462 * 11 10 8 39 39 H 1.09007 * 109.47045 * 60.00238 * 11 10 8 40 40 H 1.08999 * 109.51045 * 307.90049 * 14 12 11 41 41 H 1.09002 * 109.51103 * 67.99998 * 14 12 11 42 42 H 1.08987 * 109.51415 * 57.34205 * 16 15 14 43 43 H 1.09004 * 109.51382 * 177.49574 * 16 15 14 44 44 H 1.09002 * 109.68017 * 172.02541 * 17 16 15 45 45 H 1.09001 * 109.68345 * 292.57963 * 17 16 15 46 46 H 0.97002 * 119.99590 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1843 -0.1152 2.4065 6 6 2.6485 -1.0713 3.2447 7 6 2.7483 -2.2454 2.4610 8 6 3.2100 -3.5715 2.9194 9 8 3.5509 -3.7303 4.0754 10 7 3.2534 -4.6054 2.0559 11 6 3.7119 -5.9205 2.5103 12 6 3.6638 -6.9087 1.3432 13 1 2.6443 -6.9798 0.9642 14 6 4.1366 -8.2885 1.8152 15 8 4.2659 -9.1538 0.6846 16 6 5.2429 -8.7291 -0.2689 17 6 4.8266 -7.3719 -0.8476 18 7 4.5609 -6.4518 0.2699 19 6 5.1317 -5.2078 0.3100 20 1 5.3656 -4.7513 1.2605 21 6 5.4098 -4.5333 -0.8710 22 7 4.9381 -4.9852 -2.0136 23 14 6.4535 -2.9844 -0.8385 24 1 7.8841 -3.3480 -1.0001 25 1 6.0423 -2.0871 -1.9480 26 1 6.2635 -2.2867 0.4586 27 7 2.3502 -1.9307 1.2446 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.9840 0.9157 2.6586 36 1 2.8916 -0.9613 4.2912 37 1 2.9810 -4.4788 1.1336 38 1 4.7348 -5.8415 2.8782 39 1 3.0637 -6.2741 3.3122 40 1 5.1019 -8.1921 2.3122 41 1 3.4085 -8.7043 2.5116 42 1 6.2121 -8.6344 0.2205 43 1 5.3101 -9.4624 -1.0726 44 1 5.6308 -6.9746 -1.4669 45 1 3.9244 -7.4898 -1.4478 46 1 5.1327 -4.5141 -2.8389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051146830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:05 Heat of formation + Delta-G solvation = 28.502806 kcal Electronic energy + Delta-G solvation = -28616.269915 eV Core-core repulsion = 24736.996958 eV Total energy + Delta-G solvation = -3879.272957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43347 -39.05076 -38.12945 -35.84949 -35.21623 -33.49614 -31.57963 -30.69631 -30.50798 -29.87903 -27.61634 -27.16164 -25.72542 -23.61635 -23.37824 -22.30921 -21.39389 -20.17310 -19.65484 -19.28570 -17.64912 -16.83624 -16.13864 -15.90523 -15.76007 -15.54893 -14.83844 -14.61849 -14.54413 -14.22114 -13.92917 -13.73628 -13.54755 -13.47903 -13.08391 -13.03181 -12.79857 -12.59704 -12.44366 -12.37295 -11.82156 -11.62796 -11.50830 -11.38511 -10.98668 -10.84951 -10.70463 -10.52777 -10.36156 -10.19135 -9.98709 -9.64687 -9.54922 -9.00077 -8.93237 -8.82425 -8.59073 -8.15488 -6.66382 -5.84028 -3.32592 2.00685 2.40914 2.56818 3.32691 3.38715 3.44472 3.84965 4.03720 4.27415 4.41375 4.57958 4.58836 4.80002 4.85281 4.98825 5.16262 5.20415 5.30602 5.35129 5.35404 5.54987 5.61403 5.66455 5.72700 5.78291 5.85123 5.89304 5.95217 6.00252 6.07949 6.16036 6.20199 6.28499 6.38045 6.56974 6.67599 6.82047 6.99047 7.12375 7.19219 7.53724 7.78229 7.91125 8.11528 8.35349 8.44530 8.91667 9.12961 9.73075 10.31597 11.22904 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004565 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.513207 B = 6132.634932 C = 7109.883877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 C -0.163 4.163 4 N -0.280 5.280 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.010 4.010 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.680 5.680 11 C 0.135 3.865 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.057 3.943 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.073 0.927 21 C 0.014 3.986 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.278 1.278 27 N -0.245 5.245 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.175 0.825 36 H 0.158 0.842 37 H 0.421 0.579 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.029 0.971 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 8.755 3.516 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 C -0.221 4.221 4 N -0.069 5.069 5 C -0.169 4.169 6 C -0.212 4.212 7 C -0.171 4.171 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.331 5.331 11 C 0.011 3.989 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.316 5.316 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.544 5.544 23 Si 0.726 3.274 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.203 1.203 27 N -0.080 5.080 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.047 0.953 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.626 8.145 2.937 11.538 hybrid contribution 0.803 1.648 0.141 1.838 sum -6.823 9.792 3.078 12.325 Atomic orbital electron populations 1.22206 0.92993 1.03747 1.03122 1.21563 0.95384 0.93247 0.85946 1.22183 1.02663 0.93642 1.03662 1.45738 1.45661 1.06246 1.09270 1.22656 1.07881 1.00586 0.85825 1.21716 1.07009 0.91332 1.01122 1.22048 1.07950 0.96433 0.90650 1.16873 0.78005 0.82100 0.84987 1.90712 1.50985 1.83838 1.18179 1.45883 1.63906 1.08815 1.14538 1.21207 0.99831 0.82178 0.95724 1.21432 0.94667 0.92181 0.89965 0.94116 1.22861 1.00242 0.91149 0.88011 1.87794 1.60796 1.49061 1.33479 1.23354 0.90682 0.98862 0.91406 1.21413 1.00530 0.86204 0.89958 1.44093 1.51656 1.13992 1.21895 1.19206 1.33780 0.92431 0.92610 0.90938 1.25067 0.99782 0.97500 0.96186 1.69984 1.46087 1.40605 0.97702 0.86373 0.80289 0.83480 0.77294 1.21496 1.21808 1.20320 1.73689 1.15157 0.97330 1.21848 0.90209 0.91222 0.91791 0.87051 0.91244 0.89774 0.91356 0.80789 0.82439 0.73983 0.91311 0.92145 0.93464 0.89884 0.94121 0.90287 0.88963 0.95318 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.52 37.16 0.35 -1.05 16 2 C 0.14 1.51 3.80 -67.93 -0.26 1.25 16 3 C -0.16 -1.28 8.81 37.16 0.33 -0.95 16 4 N -0.28 -4.10 3.22 -54.82 -0.18 -4.27 16 5 C -0.03 -0.36 10.54 -17.17 -0.18 -0.54 16 6 C -0.18 -2.93 10.81 -39.36 -0.43 -3.36 16 7 C -0.01 -0.20 7.13 -82.76 -0.59 -0.79 16 8 C 0.60 12.68 7.82 -12.39 -0.10 12.58 16 9 O -0.56 -12.75 16.93 5.31 0.09 -12.66 16 10 N -0.68 -14.32 3.80 -61.29 -0.23 -14.55 16 11 C 0.13 2.65 4.44 -4.04 -0.02 2.63 16 12 C 0.12 2.54 3.20 -67.42 -0.22 2.33 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.06 1.03 6.29 37.31 0.23 1.26 16 15 O -0.39 -7.80 10.74 -35.23 -0.38 -8.18 16 16 C 0.03 0.69 6.99 37.31 0.26 0.95 16 17 C 0.14 3.36 5.38 -3.52 -0.02 3.34 16 18 N -0.59 -14.08 3.03 -164.28 -0.50 -14.58 16 19 C -0.25 -6.49 7.11 -15.06 -0.11 -6.59 16 20 H 0.07 1.94 5.81 -52.48 -0.30 1.63 16 21 C 0.01 0.38 5.06 -17.43 -0.09 0.29 16 22 N -0.90 -24.88 11.13 55.49 0.62 -24.26 16 23 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 N -0.25 -4.60 11.67 33.42 0.39 -4.21 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.43 7.05 -51.93 -0.37 0.06 16 35 H 0.17 1.51 7.16 -52.48 -0.38 1.13 16 36 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.42 9.49 7.10 -40.82 -0.29 9.20 16 38 H 0.07 1.44 7.53 -51.93 -0.39 1.05 16 39 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.79 8.14 -51.94 -0.42 0.37 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.35 6.32 -51.93 -0.33 2.02 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -32.17 371.47 -7.55 -39.72 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.11 Total: 9.13 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.82 Total: 11.35 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.10 Total: -61.87 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.29 Total: -20.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.17 -7.55 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051146830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.225 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds