Wall clock time and date at job start Tue Mar 31 2020 13:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47197 * 2 1 4 4 N 1.46500 * 109.46617 * 120.00114 * 2 1 3 5 5 C 1.35034 * 124.88354 * 275.01554 * 4 2 1 6 6 C 1.35362 * 107.23168 * 180.02562 * 5 4 2 7 7 C 1.41511 * 105.49920 * 0.02562 * 6 5 4 8 8 C 1.47711 * 126.51344 * 179.97438 * 7 6 5 9 9 O 1.21562 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99396 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99668 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47115 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.68113 * 300.77636 * 12 11 10 14 14 C 1.53300 * 109.68044 * 180.25933 * 12 11 10 15 15 O 1.42957 * 109.22037 * 187.97777 * 14 12 11 16 16 C 1.42965 * 114.16927 * 62.58111 * 15 14 12 17 17 C 1.53301 * 109.21958 * 297.41699 * 16 15 14 18 18 N 1.47153 * 109.67773 * 61.29400 * 12 11 10 19 19 C 1.36933 * 120.98451 * 350.23576 * 18 12 11 20 20 H 1.08005 * 120.00172 * 31.04252 * 19 18 12 21 21 C 1.38816 * 120.00087 * 211.04532 * 19 18 12 22 22 N 1.31622 * 119.99692 * 10.79747 * 21 19 18 23 23 Si 1.86799 * 120.00195 * 190.79419 * 21 19 18 24 24 H 1.48497 * 109.47127 * 89.99916 * 23 21 19 25 25 H 1.48499 * 109.47234 * 210.00099 * 23 21 19 26 26 H 1.48498 * 109.46875 * 329.99862 * 23 21 19 27 27 N 1.28461 * 124.88705 * 95.02765 * 4 2 1 28 28 H 1.09004 * 109.47050 * 60.00323 * 1 2 3 29 29 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47245 * 300.00437 * 1 2 3 31 31 H 1.09005 * 109.46939 * 239.99579 * 2 1 3 32 32 H 1.08995 * 109.46984 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46857 * 299.99795 * 3 2 1 34 34 H 1.08992 * 109.47379 * 59.99646 * 3 2 1 35 35 H 1.08008 * 126.38185 * 0.02562 * 5 4 2 36 36 H 1.07996 * 127.25030 * 180.02562 * 6 5 4 37 37 H 0.97001 * 120.00493 * 359.97438 * 10 8 7 38 38 H 1.08992 * 109.47382 * 300.00462 * 11 10 8 39 39 H 1.09007 * 109.47045 * 60.00238 * 11 10 8 40 40 H 1.08999 * 109.51045 * 307.90049 * 14 12 11 41 41 H 1.09002 * 109.51103 * 67.99998 * 14 12 11 42 42 H 1.08987 * 109.51415 * 57.34205 * 16 15 14 43 43 H 1.09004 * 109.51382 * 177.49574 * 16 15 14 44 44 H 1.09002 * 109.68017 * 172.02541 * 17 16 15 45 45 H 1.09001 * 109.68345 * 292.57963 * 17 16 15 46 46 H 0.97002 * 119.99590 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1843 -0.1152 2.4065 6 6 2.6485 -1.0713 3.2447 7 6 2.7483 -2.2454 2.4610 8 6 3.2100 -3.5715 2.9194 9 8 3.5509 -3.7303 4.0754 10 7 3.2534 -4.6054 2.0559 11 6 3.7119 -5.9205 2.5103 12 6 3.6638 -6.9087 1.3432 13 1 2.6443 -6.9798 0.9642 14 6 4.1366 -8.2885 1.8152 15 8 4.2659 -9.1538 0.6846 16 6 5.2429 -8.7291 -0.2689 17 6 4.8266 -7.3719 -0.8476 18 7 4.5609 -6.4518 0.2699 19 6 5.1317 -5.2078 0.3100 20 1 5.3656 -4.7513 1.2605 21 6 5.4098 -4.5333 -0.8710 22 7 4.9381 -4.9852 -2.0136 23 14 6.4535 -2.9844 -0.8385 24 1 7.8841 -3.3480 -1.0001 25 1 6.0423 -2.0871 -1.9480 26 1 6.2635 -2.2867 0.4586 27 7 2.3502 -1.9307 1.2446 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.9840 0.9157 2.6586 36 1 2.8916 -0.9613 4.2912 37 1 2.9810 -4.4788 1.1336 38 1 4.7348 -5.8415 2.8782 39 1 3.0637 -6.2741 3.3122 40 1 5.1019 -8.1921 2.3122 41 1 3.4085 -8.7043 2.5116 42 1 6.2121 -8.6344 0.2205 43 1 5.3101 -9.4624 -1.0726 44 1 5.6308 -6.9746 -1.4669 45 1 3.9244 -7.4898 -1.4478 46 1 5.1327 -4.5141 -2.8389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051146830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:04 Heat of formation + Delta-G solvation = 6.264285 kcal Electronic energy + Delta-G solvation = -28617.234250 eV Core-core repulsion = 24736.996958 eV Total energy + Delta-G solvation = -3880.237292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.63795 -40.70991 -39.77044 -36.97401 -36.71524 -35.32544 -33.34449 -32.24849 -31.85916 -31.15058 -29.01401 -28.26462 -27.28547 -25.27361 -24.86397 -23.60417 -22.95090 -21.50714 -21.24900 -20.70159 -19.04640 -18.34996 -17.62599 -17.57753 -17.27797 -16.89881 -16.41616 -16.27644 -16.08340 -15.57787 -15.43000 -15.26727 -15.09043 -14.75155 -14.66585 -14.39571 -13.94308 -13.88278 -13.53385 -13.28432 -13.14897 -13.07447 -12.93838 -12.77811 -12.52816 -12.39827 -12.19055 -12.15640 -12.01837 -11.87358 -11.80074 -11.35284 -11.19673 -10.66806 -10.57506 -10.27085 -10.06310 -9.80134 -8.62721 -7.89257 -5.38513 0.61760 1.23735 1.33520 1.35851 1.43859 1.54036 2.30273 2.42931 2.49498 3.03534 3.27233 3.35960 3.43808 3.76996 3.85959 3.93207 4.01168 4.02768 4.18837 4.26184 4.35435 4.48088 4.57854 4.62249 4.63644 4.64415 4.65985 4.71607 4.75848 4.78051 4.81708 4.86000 5.00572 5.10507 5.12426 5.18720 5.29275 5.39295 5.53045 5.62990 5.67540 5.96332 6.29304 6.36443 6.58422 6.99450 7.10631 7.26652 7.75242 8.30676 9.15413 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004565 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.513207 B = 6132.634932 C = 7109.883877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.275 5.275 5 C 0.000 4.000 6 C -0.203 4.203 7 C -0.048 4.048 8 C 0.592 3.408 9 O -0.582 6.582 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.125 3.875 13 H 0.034 0.966 14 C 0.060 3.940 15 O -0.396 6.396 16 C 0.047 3.953 17 C 0.149 3.851 18 N -0.605 5.605 19 C -0.237 4.237 20 H 0.063 0.937 21 C -0.027 4.027 22 N -0.923 5.923 23 Si 0.943 3.057 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.289 1.289 27 N -0.283 5.283 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.168 0.832 37 H 0.413 0.587 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.120 0.880 42 H 0.045 0.955 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.005 0.995 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 10.192 4.281 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.065 5.065 5 C -0.143 4.143 6 C -0.231 4.231 7 C -0.206 4.206 8 C 0.378 3.622 9 O -0.462 6.462 10 N -0.334 5.334 11 C 0.015 3.985 12 C 0.019 3.981 13 H 0.052 0.948 14 C -0.019 4.019 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.367 4.367 20 H 0.080 0.920 21 C -0.224 4.224 22 N -0.569 5.569 23 Si 0.773 3.227 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.215 1.215 27 N -0.119 5.119 28 H 0.125 0.875 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.483 9.557 3.709 13.306 hybrid contribution 0.990 1.262 -0.101 1.607 sum -7.493 10.818 3.608 13.645 Atomic orbital electron populations 1.22176 0.91017 1.02785 1.05268 1.21995 0.96951 0.94494 0.83893 1.22207 1.01624 0.91438 1.06175 1.46233 1.44061 1.05248 1.10911 1.23342 1.04744 1.01963 0.84207 1.21991 1.08155 0.90890 1.02032 1.21998 1.10147 0.96534 0.91952 1.17225 0.77432 0.82900 0.84670 1.90670 1.52202 1.84458 1.18913 1.45937 1.63962 1.09476 1.14039 1.21227 0.99527 0.81735 0.95986 1.21572 0.93644 0.93793 0.89105 0.94837 1.22969 1.01510 0.89456 0.87945 1.87801 1.60754 1.49147 1.33776 1.23215 0.90618 0.97146 0.92098 1.21257 0.98569 0.88106 0.89667 1.44296 1.52385 1.13662 1.22730 1.19174 1.32611 0.92962 0.91917 0.91982 1.25505 1.01206 0.99431 0.96238 1.70089 1.47531 1.41470 0.97818 0.85643 0.79285 0.81376 0.76360 1.21307 1.21789 1.21542 1.73613 1.16584 0.99757 1.21991 0.87458 0.93721 0.90198 0.89216 0.92832 0.87239 0.88905 0.75641 0.81437 0.75038 0.92744 0.89678 0.92998 0.86230 0.93697 0.87616 0.91530 0.97653 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.52 71.98 0.69 -1.64 16 2 C 0.13 2.53 3.80 44.99 0.17 2.70 16 3 C -0.16 -1.93 8.81 71.98 0.63 -1.29 16 4 N -0.27 -7.76 3.22 -327.37 -1.05 -8.81 16 5 C 0.00 0.00 10.54 83.54 0.88 0.88 16 6 C -0.20 -6.31 10.81 22.41 0.24 -6.07 16 7 C -0.05 -1.88 7.13 42.46 0.30 -1.58 16 8 C 0.59 25.92 7.82 86.75 0.68 26.60 16 9 O -0.58 -27.11 16.93 -3.91 -0.07 -27.17 16 10 N -0.69 -29.70 3.80 -466.10 -1.77 -31.47 16 11 C 0.14 5.49 4.44 86.38 0.38 5.88 16 12 C 0.13 5.08 3.20 44.97 0.14 5.22 16 13 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 14 C 0.06 2.05 6.29 72.08 0.45 2.51 16 15 O -0.40 -14.94 10.74 -148.98 -1.60 -16.54 16 16 C 0.05 1.79 6.99 72.08 0.50 2.29 16 17 C 0.15 7.06 5.38 86.35 0.46 7.52 16 18 N -0.60 -29.26 3.03 -673.66 -2.04 -31.30 16 19 C -0.24 -12.52 7.11 84.04 0.60 -11.92 16 20 H 0.06 3.42 5.81 -2.91 -0.02 3.40 16 21 C -0.03 -1.48 5.06 84.86 0.43 -1.05 16 22 N -0.92 -52.56 11.13 21.65 0.24 -52.32 16 23 Si 0.94 46.29 29.57 68.60 2.03 48.31 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 27 N -0.28 -10.82 11.67 -48.17 -0.56 -11.38 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 2.17 8.14 -2.38 -0.02 2.16 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.70 7.05 -2.39 -0.02 0.69 16 35 H 0.23 2.74 7.16 -2.91 -0.02 2.72 16 36 H 0.17 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.41 19.40 7.10 -92.71 -0.66 18.75 16 38 H 0.05 2.31 7.53 -2.39 -0.02 2.29 16 39 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 44 H 0.07 3.48 6.32 -2.39 -0.02 3.47 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -72.76 371.47 2.07 -70.69 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.33 Total: 29.94 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 6.57 Total: 30.05 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -5.19 Total: -135.28 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.67 Total: -43.71 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -72.76 2.07 -70.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051146830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.953 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds