Wall clock time and date at job start Tue Mar 31 2020 13:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 N 1.46496 * 109.47795 * 120.00308 * 2 1 3 5 5 C 1.35034 * 124.88394 * 274.98190 * 4 2 1 6 6 C 1.35369 * 107.22434 * 179.72290 * 5 4 2 7 7 C 1.41495 * 105.50331 * 0.40728 * 6 5 4 8 8 C 1.47715 * 126.51782 * 179.84600 * 7 6 5 9 9 O 1.21575 * 119.99726 * 359.71670 * 8 7 6 10 10 N 1.34776 * 120.00259 * 179.71769 * 8 7 6 11 11 C 1.46502 * 120.00228 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47229 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.68015 * 59.84498 * 12 11 10 14 14 C 1.53294 * 109.68259 * 180.40643 * 12 11 10 15 15 O 1.42961 * 109.22443 * 172.02710 * 14 12 11 16 16 C 1.42965 * 114.16453 * 297.41744 * 15 14 12 17 17 C 1.53295 * 109.22565 * 62.57997 * 16 15 14 18 18 N 1.47151 * 108.38182 * 307.70123 * 17 16 15 19 19 C 1.36941 * 120.97624 * 230.55299 * 18 17 16 20 20 H 1.08004 * 119.99629 * 148.30777 * 19 18 17 21 21 C 1.38807 * 120.00481 * 328.29994 * 19 18 17 22 22 N 1.31620 * 119.99733 * 349.29267 * 21 19 18 23 23 Si 1.86795 * 120.00251 * 169.28125 * 21 19 18 24 24 H 1.48507 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46917 * 120.00251 * 23 21 19 26 26 H 1.48501 * 109.47499 * 240.00474 * 23 21 19 27 27 N 1.28465 * 124.88039 * 94.96943 * 4 2 1 28 28 H 1.09006 * 109.47172 * 299.99589 * 1 2 3 29 29 H 1.09001 * 109.47616 * 59.99748 * 1 2 3 30 30 H 1.09002 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46777 * 240.00757 * 2 1 3 32 32 H 1.08997 * 109.47134 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47656 * 300.00293 * 3 2 1 34 34 H 1.09004 * 109.46799 * 60.00770 * 3 2 1 35 35 H 1.07998 * 126.38368 * 359.97438 * 5 4 2 36 36 H 1.07998 * 127.24705 * 180.25967 * 6 5 4 37 37 H 0.96997 * 119.99618 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47112 * 59.99646 * 11 10 8 39 39 H 1.08997 * 109.46743 * 300.00024 * 11 10 8 40 40 H 1.09003 * 109.51060 * 291.94564 * 14 12 11 41 41 H 1.08994 * 109.51675 * 52.10026 * 14 12 11 42 42 H 1.09006 * 109.51242 * 302.65662 * 16 15 14 43 43 H 1.09000 * 109.55598 * 182.53201 * 16 15 14 44 44 H 1.08994 * 109.68222 * 187.97528 * 17 16 15 45 45 H 1.09004 * 109.70707 * 67.43685 * 17 16 15 46 46 H 0.96999 * 120.00125 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1853 -0.1151 2.4062 6 6 2.6431 -1.0730 3.2459 7 6 2.7468 -2.2459 2.4612 8 6 3.2067 -3.5725 2.9198 9 8 3.5477 -3.7314 4.0759 10 7 3.2484 -4.6068 2.0567 11 6 3.7052 -5.9225 2.5115 12 6 3.6555 -6.9109 1.3448 13 1 4.3005 -6.5604 0.5391 14 6 4.1229 -8.2920 1.8179 15 8 3.8982 -9.2468 0.7779 16 6 2.5229 -9.4170 0.4267 17 6 1.9734 -8.0935 -0.1176 18 7 2.2728 -7.0313 0.8558 19 6 1.2934 -6.1803 1.2939 20 1 1.3346 -5.7801 2.2962 21 6 0.2479 -5.8320 0.4499 22 7 0.3022 -6.1430 -0.8279 23 14 -1.2361 -4.9221 1.1275 24 1 -1.0535 -4.6925 2.5833 25 1 -1.3749 -3.6161 0.4343 26 1 -2.4592 -5.7339 0.9036 27 7 2.3495 -1.9309 1.2445 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9565 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.9862 0.9161 2.6580 36 1 2.8816 -0.9643 4.2936 37 1 2.9761 -4.4801 1.1344 38 1 3.0568 -6.2749 3.3136 39 1 4.7283 -5.8447 2.8790 40 1 5.1863 -8.2551 2.0546 41 1 3.5613 -8.5820 2.7059 42 1 1.9554 -9.7111 1.3097 43 1 2.4342 -10.1896 -0.3370 44 1 0.8950 -8.1724 -0.2548 45 1 2.4488 -7.8625 -1.0709 46 1 -0.4286 -5.8999 -1.4177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051146832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:08 Heat of formation + Delta-G solvation = 28.371394 kcal Electronic energy + Delta-G solvation = -28680.847367 eV Core-core repulsion = 24801.568711 eV Total energy + Delta-G solvation = -3879.278656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43071 -39.05006 -38.12728 -35.83560 -35.21801 -33.48806 -31.58097 -30.69358 -30.51352 -29.87214 -27.58071 -27.16518 -25.72162 -23.60774 -23.38198 -22.30503 -21.39605 -20.16627 -19.65406 -19.28532 -17.64304 -16.82918 -16.16111 -15.89388 -15.68509 -15.60648 -14.81698 -14.62659 -14.51591 -14.23994 -13.91265 -13.72240 -13.55817 -13.47948 -13.11350 -12.97819 -12.77148 -12.62132 -12.43296 -12.33982 -11.81212 -11.61283 -11.50015 -11.37044 -11.00041 -10.84393 -10.69900 -10.52345 -10.35762 -10.19242 -10.00032 -9.64186 -9.54536 -8.99910 -8.93213 -8.82200 -8.59847 -8.14942 -6.65612 -5.84728 -3.33625 2.00964 2.40843 2.57686 3.30487 3.38185 3.44650 3.85461 4.03627 4.28162 4.40852 4.57838 4.60361 4.80078 4.86375 5.00131 5.18316 5.20653 5.32258 5.34697 5.39972 5.55615 5.61341 5.66622 5.73168 5.78332 5.89394 5.95446 5.97992 6.00523 6.07875 6.16072 6.20009 6.28592 6.37696 6.56836 6.67849 6.82120 6.99431 7.11668 7.19638 7.52960 7.78346 7.90831 8.11926 8.35313 8.45080 8.92168 9.12541 9.72498 10.31402 11.22214 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.004670 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.838534 B = 5993.923301 C = 7128.234129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.142 3.858 3 C -0.162 4.162 4 N -0.280 5.280 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.011 4.011 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.680 5.680 11 C 0.135 3.865 12 C 0.124 3.876 13 H 0.041 0.959 14 C 0.057 3.943 15 O -0.393 6.393 16 C 0.035 3.965 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.073 0.927 21 C 0.015 3.985 22 N -0.899 5.899 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.290 1.290 27 N -0.245 5.245 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.175 0.825 36 H 0.158 0.842 37 H 0.422 0.578 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 11.385 0.785 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 C -0.220 4.220 4 N -0.069 5.069 5 C -0.170 4.170 6 C -0.212 4.212 7 C -0.172 4.172 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.331 5.331 11 C 0.011 3.989 12 C 0.017 3.983 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.185 4.185 22 N -0.543 5.543 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.217 1.217 27 N -0.080 5.080 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.047 0.953 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.117 10.795 0.184 11.238 hybrid contribution -1.321 1.119 0.669 1.856 sum 1.796 11.914 0.853 12.079 Atomic orbital electron populations 1.22246 0.93022 1.04221 1.03080 1.21540 0.95516 0.93054 0.85794 1.22177 1.02380 0.93680 1.03726 1.45750 1.45644 1.06119 1.09384 1.22659 1.07808 1.00605 0.85891 1.21714 1.07222 0.91259 1.00980 1.22054 1.07981 0.96323 0.90810 1.16882 0.77977 0.82089 0.85074 1.90716 1.51040 1.84043 1.17945 1.45900 1.63921 1.08278 1.15023 1.21201 0.98358 0.82250 0.97123 1.21433 0.89351 0.92955 0.94521 0.94104 1.22863 0.99856 0.89558 0.89975 1.87796 1.26507 1.60557 1.56262 1.23350 0.82092 0.99915 0.98943 1.21395 1.01286 0.84381 0.90997 1.44095 1.02327 1.34353 1.50882 1.19233 1.01308 1.21454 0.96011 0.90956 1.25077 0.99889 0.98735 0.94781 1.69990 1.31945 1.49776 1.02543 0.86320 0.83114 0.79345 0.78732 1.20237 1.21683 1.21679 1.73705 1.14868 0.97032 1.22379 0.91789 0.90170 0.90944 0.87151 0.91320 0.89811 0.91373 0.80789 0.82434 0.73921 0.91342 0.92133 0.89886 0.93453 0.94123 0.90292 0.89082 0.95292 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.52 37.16 0.35 -1.45 16 2 C 0.14 1.56 3.80 -67.93 -0.26 1.30 16 3 C -0.16 -1.15 8.80 37.16 0.33 -0.82 16 4 N -0.28 -4.12 3.22 -54.83 -0.18 -4.29 16 5 C -0.03 -0.36 10.54 -17.17 -0.18 -0.54 16 6 C -0.18 -2.93 10.81 -39.37 -0.43 -3.35 16 7 C -0.01 -0.22 7.13 -82.76 -0.59 -0.81 16 8 C 0.60 12.65 7.83 -12.39 -0.10 12.56 16 9 O -0.56 -12.74 16.93 5.30 0.09 -12.65 16 10 N -0.68 -14.32 3.78 -61.30 -0.23 -14.55 16 11 C 0.13 2.66 4.45 -4.05 -0.02 2.64 16 12 C 0.12 2.54 3.21 -67.43 -0.22 2.32 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.06 1.03 6.29 37.31 0.23 1.26 16 15 O -0.39 -7.79 10.74 -35.23 -0.38 -8.17 16 16 C 0.03 0.69 6.98 37.31 0.26 0.95 16 17 C 0.14 3.37 5.37 -3.53 -0.02 3.35 16 18 N -0.59 -14.07 3.03 -164.31 -0.50 -14.57 16 19 C -0.25 -6.47 7.04 -15.06 -0.11 -6.58 16 20 H 0.07 1.94 5.84 -52.48 -0.31 1.63 16 21 C 0.01 0.39 5.06 -17.43 -0.09 0.30 16 22 N -0.90 -24.77 11.17 55.49 0.62 -24.15 16 23 Si 0.89 21.86 29.57 -169.99 -5.03 16.83 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 N -0.24 -4.60 11.67 33.42 0.39 -4.21 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.41 7.05 -51.93 -0.37 0.05 16 35 H 0.17 1.51 7.16 -52.49 -0.38 1.13 16 36 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.42 9.52 7.05 -40.82 -0.29 9.23 16 38 H 0.07 1.44 7.56 -51.93 -0.39 1.04 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.09 2.32 6.37 -51.93 -0.33 1.99 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -32.01 371.48 -7.55 -39.56 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.11 Total: 9.49 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.82 Total: 11.13 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.10 Total: -61.78 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.29 Total: -20.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.01 -7.55 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051146832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.930 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds