Wall clock time and date at job start Tue Mar 31 2020 13:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 N 1.46496 * 109.47795 * 120.00308 * 2 1 3 5 5 C 1.35034 * 124.88394 * 274.98190 * 4 2 1 6 6 C 1.35369 * 107.22434 * 179.72290 * 5 4 2 7 7 C 1.41495 * 105.50331 * 0.40728 * 6 5 4 8 8 C 1.47715 * 126.51782 * 179.84600 * 7 6 5 9 9 O 1.21575 * 119.99726 * 359.71670 * 8 7 6 10 10 N 1.34776 * 120.00259 * 179.71769 * 8 7 6 11 11 C 1.46502 * 120.00228 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47229 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.68015 * 59.84498 * 12 11 10 14 14 C 1.53294 * 109.68259 * 180.40643 * 12 11 10 15 15 O 1.42961 * 109.22443 * 172.02710 * 14 12 11 16 16 C 1.42965 * 114.16453 * 297.41744 * 15 14 12 17 17 C 1.53295 * 109.22565 * 62.57997 * 16 15 14 18 18 N 1.47151 * 108.38182 * 307.70123 * 17 16 15 19 19 C 1.36941 * 120.97624 * 230.55299 * 18 17 16 20 20 H 1.08004 * 119.99629 * 148.30777 * 19 18 17 21 21 C 1.38807 * 120.00481 * 328.29994 * 19 18 17 22 22 N 1.31620 * 119.99733 * 349.29267 * 21 19 18 23 23 Si 1.86795 * 120.00251 * 169.28125 * 21 19 18 24 24 H 1.48507 * 109.46949 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46917 * 120.00251 * 23 21 19 26 26 H 1.48501 * 109.47499 * 240.00474 * 23 21 19 27 27 N 1.28465 * 124.88039 * 94.96943 * 4 2 1 28 28 H 1.09006 * 109.47172 * 299.99589 * 1 2 3 29 29 H 1.09001 * 109.47616 * 59.99748 * 1 2 3 30 30 H 1.09002 * 109.47078 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46777 * 240.00757 * 2 1 3 32 32 H 1.08997 * 109.47134 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47656 * 300.00293 * 3 2 1 34 34 H 1.09004 * 109.46799 * 60.00770 * 3 2 1 35 35 H 1.07998 * 126.38368 * 359.97438 * 5 4 2 36 36 H 1.07998 * 127.24705 * 180.25967 * 6 5 4 37 37 H 0.96997 * 119.99618 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47112 * 59.99646 * 11 10 8 39 39 H 1.08997 * 109.46743 * 300.00024 * 11 10 8 40 40 H 1.09003 * 109.51060 * 291.94564 * 14 12 11 41 41 H 1.08994 * 109.51675 * 52.10026 * 14 12 11 42 42 H 1.09006 * 109.51242 * 302.65662 * 16 15 14 43 43 H 1.09000 * 109.55598 * 182.53201 * 16 15 14 44 44 H 1.08994 * 109.68222 * 187.97528 * 17 16 15 45 45 H 1.09004 * 109.70707 * 67.43685 * 17 16 15 46 46 H 0.96999 * 120.00125 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1853 -0.1151 2.4062 6 6 2.6431 -1.0730 3.2459 7 6 2.7468 -2.2459 2.4612 8 6 3.2067 -3.5725 2.9198 9 8 3.5477 -3.7314 4.0759 10 7 3.2484 -4.6068 2.0567 11 6 3.7052 -5.9225 2.5115 12 6 3.6555 -6.9109 1.3448 13 1 4.3005 -6.5604 0.5391 14 6 4.1229 -8.2920 1.8179 15 8 3.8982 -9.2468 0.7779 16 6 2.5229 -9.4170 0.4267 17 6 1.9734 -8.0935 -0.1176 18 7 2.2728 -7.0313 0.8558 19 6 1.2934 -6.1803 1.2939 20 1 1.3346 -5.7801 2.2962 21 6 0.2479 -5.8320 0.4499 22 7 0.3022 -6.1430 -0.8279 23 14 -1.2361 -4.9221 1.1275 24 1 -1.0535 -4.6925 2.5833 25 1 -1.3749 -3.6161 0.4343 26 1 -2.4592 -5.7339 0.9036 27 7 2.3495 -1.9309 1.2445 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9565 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.9862 0.9161 2.6580 36 1 2.8816 -0.9643 4.2936 37 1 2.9761 -4.4801 1.1344 38 1 3.0568 -6.2749 3.3136 39 1 4.7283 -5.8447 2.8790 40 1 5.1863 -8.2551 2.0546 41 1 3.5613 -8.5820 2.7059 42 1 1.9554 -9.7111 1.3097 43 1 2.4342 -10.1896 -0.3370 44 1 0.8950 -8.1724 -0.2548 45 1 2.4488 -7.8625 -1.0709 46 1 -0.4286 -5.8999 -1.4177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051146832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:07 Heat of formation + Delta-G solvation = 6.207443 kcal Electronic energy + Delta-G solvation = -28681.808468 eV Core-core repulsion = 24801.568711 eV Total energy + Delta-G solvation = -3880.239757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.63843 -40.71008 -39.76801 -36.97782 -36.72368 -35.31769 -33.34800 -32.25538 -31.85686 -31.15788 -29.01770 -28.28513 -27.28089 -25.27637 -24.86625 -23.60922 -22.95282 -21.50392 -21.25174 -20.70138 -19.04644 -18.34566 -17.67122 -17.54672 -17.24161 -16.93994 -16.41197 -16.27072 -16.07339 -15.58622 -15.45594 -15.26450 -15.09274 -14.74554 -14.68863 -14.38201 -13.94545 -13.89525 -13.55158 -13.30133 -13.13273 -13.10025 -12.95865 -12.79683 -12.53085 -12.39195 -12.18483 -12.16640 -12.01898 -11.88281 -11.79876 -11.34954 -11.19349 -10.67279 -10.57865 -10.27275 -10.06222 -9.80015 -8.61965 -7.89970 -5.39538 0.61725 1.23494 1.31414 1.35105 1.43705 1.54251 2.30377 2.42366 2.49486 3.03541 3.26872 3.36630 3.43733 3.75889 3.84340 3.93307 4.01074 4.01984 4.18282 4.25594 4.34995 4.47972 4.57614 4.58801 4.63042 4.63693 4.65904 4.70343 4.75087 4.78364 4.82474 4.85033 5.00490 5.09063 5.10451 5.19665 5.28900 5.39507 5.53252 5.62554 5.67451 5.96370 6.29309 6.36345 6.58837 6.99640 7.10369 7.27000 7.74720 8.30474 9.14764 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013498 B = 0.004670 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.838534 B = 5993.923301 C = 7128.234129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.151 4.151 4 N -0.275 5.275 5 C 0.001 3.999 6 C -0.202 4.202 7 C -0.047 4.047 8 C 0.592 3.408 9 O -0.582 6.582 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.125 3.875 13 H 0.034 0.966 14 C 0.060 3.940 15 O -0.396 6.396 16 C 0.047 3.953 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.236 4.236 20 H 0.061 0.939 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 0.940 3.060 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.288 1.288 27 N -0.283 5.283 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.025 0.975 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.228 0.772 36 H 0.168 0.832 37 H 0.413 0.587 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.006 0.994 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.471 13.214 1.248 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.065 5.065 5 C -0.142 4.142 6 C -0.230 4.230 7 C -0.206 4.206 8 C 0.377 3.623 9 O -0.463 6.463 10 N -0.334 5.334 11 C 0.015 3.985 12 C 0.019 3.981 13 H 0.052 0.948 14 C -0.019 4.019 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.025 3.975 18 N -0.331 5.331 19 C -0.366 4.366 20 H 0.079 0.921 21 C -0.222 4.222 22 N -0.568 5.568 23 Si 0.770 3.230 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.214 1.214 27 N -0.120 5.120 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.244 0.756 36 H 0.186 0.814 37 H 0.250 0.750 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.541 12.604 0.650 13.108 hybrid contribution -1.427 0.635 0.497 1.639 sum 2.113 13.239 1.147 13.455 Atomic orbital electron populations 1.22238 0.92717 1.01801 1.05320 1.21962 0.95747 0.95083 0.84137 1.22177 1.02188 0.90594 1.05956 1.46233 1.44103 1.05118 1.11049 1.23353 1.04602 1.02015 0.84244 1.21991 1.08342 0.90791 1.01893 1.22000 1.10107 0.96408 0.92100 1.17233 0.77398 0.82911 0.84727 1.90674 1.52251 1.84693 1.18644 1.45954 1.64039 1.08891 1.14523 1.21223 0.99316 0.81648 0.96289 1.21573 0.87306 0.94851 0.94395 0.94811 1.22970 1.02089 0.87349 0.89457 1.87802 1.26217 1.60706 1.56738 1.23211 0.82024 0.98155 0.99688 1.21239 0.99688 0.86308 0.90309 1.44296 1.03557 1.34400 1.50845 1.19178 1.01532 1.20641 0.95257 0.92094 1.25495 1.01685 0.99969 0.95057 1.70089 1.32325 1.51212 1.03142 0.85625 0.81407 0.78489 0.77448 1.21215 1.21884 1.21447 1.73629 1.16313 0.99450 1.22586 0.90385 0.87149 0.95527 0.88432 0.91553 0.87321 0.89402 0.75609 0.81401 0.74989 0.92792 0.89658 0.86225 0.93010 0.93701 0.87609 0.91651 0.97608 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.52 71.98 0.69 -2.54 16 2 C 0.13 2.63 3.80 44.99 0.17 2.80 16 3 C -0.15 -1.57 8.80 71.98 0.63 -0.93 16 4 N -0.28 -7.80 3.22 -327.39 -1.05 -8.85 16 5 C 0.00 0.01 10.54 83.54 0.88 0.89 16 6 C -0.20 -6.27 10.81 22.41 0.24 -6.02 16 7 C -0.05 -1.87 7.13 42.46 0.30 -1.57 16 8 C 0.59 25.87 7.83 86.75 0.68 26.55 16 9 O -0.58 -27.08 16.93 -3.95 -0.07 -27.15 16 10 N -0.68 -29.71 3.78 -466.11 -1.76 -31.48 16 11 C 0.14 5.50 4.45 86.38 0.38 5.88 16 12 C 0.13 5.07 3.21 44.96 0.14 5.22 16 13 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 14 C 0.06 2.06 6.29 72.08 0.45 2.51 16 15 O -0.40 -14.93 10.74 -148.98 -1.60 -16.53 16 16 C 0.05 1.79 6.98 72.08 0.50 2.29 16 17 C 0.15 7.08 5.37 86.35 0.46 7.54 16 18 N -0.60 -29.27 3.03 -673.74 -2.04 -31.31 16 19 C -0.24 -12.49 7.04 84.03 0.59 -11.90 16 20 H 0.06 3.37 5.84 -2.91 -0.02 3.35 16 21 C -0.03 -1.38 5.06 84.86 0.43 -0.95 16 22 N -0.92 -52.45 11.17 21.65 0.24 -52.21 16 23 Si 0.94 46.30 29.57 68.60 2.03 48.33 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 N -0.28 -10.85 11.67 -48.17 -0.56 -11.42 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.60 7.05 -2.39 -0.02 0.58 16 35 H 0.23 2.72 7.16 -2.91 -0.02 2.70 16 36 H 0.17 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.41 19.47 7.05 -92.71 -0.65 18.81 16 38 H 0.05 2.29 7.56 -2.39 -0.02 2.27 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 40 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.07 3.42 6.37 -2.39 -0.02 3.40 16 45 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.85 371.48 2.08 -70.77 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.33 Total: 30.07 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 6.56 Total: 29.77 kcal Atomic # 7 Polarization: -130.08 SS G_CDS: -5.18 Total: -135.26 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.67 Total: -43.68 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -72.85 2.08 -70.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051146832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.978 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds