Wall clock time and date at job start Tue Mar 31 2020 13:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47325 * 2 1 4 4 N 1.46509 * 109.47455 * 120.00090 * 2 1 3 5 5 C 1.34255 * 125.75283 * 274.98225 * 4 2 1 6 6 C 1.38042 * 107.41844 * 179.97438 * 5 4 2 7 7 C 1.47426 * 126.41794 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99503 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00292 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99768 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46892 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.68146 * 300.71637 * 11 10 9 13 13 C 1.53298 * 109.68368 * 180.19797 * 11 10 9 14 14 O 1.42964 * 109.22294 * 187.97760 * 13 11 10 15 15 C 1.42961 * 114.16719 * 62.57652 * 14 13 11 16 16 C 1.53286 * 109.22574 * 297.42198 * 15 14 13 17 17 N 1.47152 * 109.68038 * 61.23327 * 11 10 9 18 18 C 1.36939 * 120.98250 * 350.23458 * 17 11 10 19 19 H 1.08004 * 119.99788 * 31.03544 * 18 17 11 20 20 C 1.38813 * 119.99941 * 211.02964 * 18 17 11 21 21 N 1.31611 * 120.00230 * 10.83432 * 20 18 17 22 22 Si 1.86796 * 119.99714 * 190.82322 * 20 18 17 23 23 H 1.48504 * 109.47231 * 60.00778 * 22 20 18 24 24 H 1.48503 * 109.47440 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47601 * 300.00478 * 22 20 18 26 26 C 1.41295 * 107.16745 * 359.97438 * 6 5 4 27 27 N 1.30448 * 108.02255 * 359.97438 * 26 6 5 28 28 H 1.09004 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47266 * 299.99816 * 1 2 3 30 30 H 1.09002 * 109.47138 * 60.00325 * 1 2 3 31 31 H 1.09002 * 109.47266 * 240.00184 * 2 1 3 32 32 H 1.09000 * 109.47242 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47168 * 300.00465 * 3 2 1 34 34 H 1.09002 * 109.46798 * 59.99898 * 3 2 1 35 35 H 1.08006 * 126.29006 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99521 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47354 * 299.99693 * 10 9 7 38 38 H 1.09007 * 109.47287 * 60.00271 * 10 9 7 39 39 H 1.08994 * 109.50949 * 307.90118 * 13 11 10 40 40 H 1.08997 * 109.51062 * 68.00039 * 13 11 10 41 41 H 1.09004 * 109.50745 * 57.34669 * 15 14 13 42 42 H 1.09003 * 109.51109 * 177.49294 * 15 14 13 43 43 H 1.09005 * 109.68370 * 172.02495 * 16 15 14 44 44 H 1.08999 * 109.68146 * 292.57713 * 16 15 14 45 45 H 0.97002 * 120.00311 * 179.97438 * 21 20 18 46 46 H 1.08002 * 125.98459 * 180.26704 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1907 -0.1362 2.4067 6 6 2.6625 -1.1224 3.2495 7 6 2.9946 -0.9682 4.6776 8 8 2.8587 0.1116 5.2202 9 7 3.4487 -2.0238 5.3818 10 6 3.7791 -1.8703 6.8007 11 6 4.2670 -3.2089 7.3584 12 1 3.4889 -3.9626 7.2372 13 6 4.6095 -3.0550 8.8447 14 8 5.2366 -4.2527 9.3097 15 6 6.4789 -4.5501 8.6678 16 6 6.2321 -4.7805 7.1726 17 7 5.4815 -3.6310 6.6427 18 6 5.9009 -2.9732 5.5173 19 1 5.7062 -1.9168 5.4051 20 6 6.5765 -3.6641 4.5208 21 7 6.6289 -4.9788 4.5511 22 14 7.4111 -2.7278 3.1365 23 1 8.4397 -1.8190 3.7034 24 1 8.0575 -3.6894 2.2077 25 1 6.3993 -1.9306 2.3977 26 6 2.7677 -2.3074 2.4872 27 7 2.3820 -2.0399 1.2701 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.9952 0.8922 2.6725 36 1 3.5567 -2.8852 4.9490 37 1 4.5640 -1.1222 6.9122 38 1 2.8921 -1.5508 7.3479 39 1 5.2894 -2.2134 8.9763 40 1 3.6961 -2.8774 9.4123 41 1 7.1657 -3.7138 8.7989 42 1 6.9104 -5.4489 9.1085 43 1 7.1859 -4.8676 6.6522 44 1 5.6524 -5.6929 7.0326 45 1 7.1007 -5.4617 3.8545 46 1 3.1037 -3.2676 2.8499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051208150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:11 Heat of formation + Delta-G solvation = 22.553647 kcal Electronic energy + Delta-G solvation = -28351.720343 eV Core-core repulsion = 24472.189411 eV Total energy + Delta-G solvation = -3879.530932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21869 -38.98721 -38.08145 -35.86148 -35.23021 -33.50070 -31.59160 -30.50887 -30.29486 -29.73883 -27.66306 -27.17479 -25.63856 -23.44629 -23.30735 -22.02679 -21.49548 -19.88519 -19.72965 -19.45663 -17.76140 -16.60801 -15.84578 -15.67168 -15.50977 -15.42582 -14.89735 -14.81299 -14.57305 -14.25363 -14.13827 -13.79697 -13.64436 -13.29879 -13.05424 -12.87187 -12.80482 -12.63231 -12.42224 -12.35283 -11.82300 -11.68082 -11.51712 -11.49433 -11.00369 -10.83574 -10.81867 -10.68818 -10.38295 -10.23067 -10.00617 -9.63685 -9.39822 -9.36363 -8.93884 -8.63876 -8.51450 -8.09544 -6.69716 -5.87258 -3.36617 1.78504 2.39028 2.51904 3.34336 3.39497 3.43108 3.90157 4.04830 4.26795 4.39207 4.55003 4.56874 4.72889 4.81946 5.01294 5.12342 5.18923 5.25466 5.30865 5.32524 5.47384 5.53376 5.61339 5.65160 5.75582 5.78695 5.81083 5.87515 6.00668 6.08096 6.18001 6.19893 6.29512 6.36464 6.55787 6.68488 6.80756 6.98323 7.10372 7.21227 7.51603 7.75047 7.75869 7.89536 8.31437 8.36695 8.96026 9.09651 9.69765 10.28676 11.19233 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.004007 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.057612 B = 6986.370527 C = 8085.979139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.362 5.362 5 C 0.118 3.882 6 C -0.280 4.280 7 C 0.589 3.411 8 O -0.575 6.575 9 N -0.691 5.691 10 C 0.138 3.862 11 C 0.125 3.875 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.074 0.926 20 C 0.012 3.988 21 N -0.900 5.900 22 Si 0.894 3.106 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.091 3.909 27 N -0.303 5.303 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.181 0.819 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.029 0.971 45 H 0.256 0.744 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 7.688 -4.972 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.142 5.142 5 C -0.033 4.033 6 C -0.295 4.295 7 C 0.376 3.624 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.014 3.986 11 C 0.018 3.982 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.544 5.544 22 Si 0.723 3.277 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.097 4.097 27 N -0.122 5.122 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.198 0.802 36 H 0.251 0.749 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.774 7.770 -5.885 13.804 hybrid contribution 0.990 0.421 -0.453 1.167 sum -8.784 8.190 -6.338 13.580 Atomic orbital electron populations 1.22244 0.93478 1.03440 1.03108 1.21313 0.94892 0.92821 0.85866 1.22237 1.02658 0.93928 1.03767 1.48699 1.49507 1.07737 1.08290 1.22751 0.96509 0.99354 0.84672 1.20349 1.18448 0.94474 0.96242 1.17184 0.76745 0.83958 0.84542 1.90691 1.56720 1.26724 1.71584 1.45750 1.64140 1.13322 1.10868 1.21138 0.98922 0.97591 0.80974 1.21432 0.90796 0.94112 0.91882 0.94097 1.22864 0.96952 0.87350 0.95155 1.87797 1.37216 1.43277 1.62852 1.23353 0.84988 0.99288 0.96695 1.21413 0.98583 0.89448 0.88689 1.44093 1.23211 1.35641 1.28742 1.19192 1.33181 0.92058 0.93887 0.90875 1.25084 1.01308 0.95115 0.97203 1.69962 1.44706 1.05165 1.34568 0.86497 0.79943 0.79064 0.82180 1.21094 1.21647 1.20460 1.24214 0.95986 0.99392 0.90078 1.77155 1.21751 0.92550 1.20758 0.91475 0.91740 0.90463 0.87782 0.91255 0.89893 0.91263 0.80155 0.74858 0.91521 0.92353 0.93515 0.89919 0.94149 0.90292 0.88973 0.95274 0.93430 0.79054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.52 37.15 0.35 -0.92 16 2 C 0.15 1.45 3.91 -67.93 -0.27 1.18 16 3 C -0.17 -1.24 8.82 37.16 0.33 -0.91 16 4 N -0.36 -5.02 3.50 -54.31 -0.19 -5.21 16 5 C 0.12 1.74 10.39 -16.56 -0.17 1.57 16 6 C -0.28 -4.92 6.13 -105.07 -0.64 -5.56 16 7 C 0.59 11.50 7.81 -12.52 -0.10 11.40 16 8 O -0.58 -12.41 16.90 5.27 0.09 -12.32 16 9 N -0.69 -13.30 3.79 -61.38 -0.23 -13.53 16 10 C 0.14 2.58 4.44 -4.04 -0.02 2.56 16 11 C 0.12 2.44 3.20 -67.42 -0.22 2.22 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 O -0.39 -7.64 10.74 -35.23 -0.38 -8.02 16 15 C 0.03 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.26 5.38 -3.53 -0.02 3.24 16 17 N -0.59 -13.54 3.03 -164.29 -0.50 -14.04 16 18 C -0.25 -6.26 7.10 -15.06 -0.11 -6.37 16 19 H 0.07 1.86 5.81 -52.48 -0.30 1.55 16 20 C 0.01 0.32 5.06 -17.43 -0.09 0.23 16 21 N -0.90 -24.09 11.13 55.49 0.62 -23.47 16 22 Si 0.89 21.20 29.57 -169.99 -5.03 16.17 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 C 0.09 1.57 11.50 -16.98 -0.20 1.38 16 27 N -0.30 -5.06 12.50 30.86 0.39 -4.68 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.49 7.13 -51.93 -0.37 0.12 16 35 H 0.18 2.23 7.23 -52.48 -0.38 1.85 16 36 H 0.41 8.22 6.32 -40.82 -0.26 7.96 16 37 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.19 3.18 7.50 -52.49 -0.39 2.79 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -31.01 371.02 -7.34 -38.36 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.06 Total: 8.98 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -0.65 Total: 12.18 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.08 Total: -60.93 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.29 Total: -20.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.01 -7.34 -38.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051208150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.909 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds