Wall clock time and date at job start Tue Mar 31 2020 13:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 N 1.46496 * 109.47264 * 120.00007 * 2 1 3 5 5 C 1.34267 * 125.75428 * 275.00034 * 4 2 1 6 6 C 1.38041 * 107.41861 * 179.73621 * 5 4 2 7 7 C 1.47428 * 126.41751 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99497 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00320 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00122 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.67542 * 59.85028 * 11 10 9 13 13 C 1.53301 * 109.67903 * 180.40016 * 11 10 9 14 14 O 1.42964 * 109.21861 * 172.02490 * 13 11 10 15 15 C 1.42959 * 114.16791 * 297.41955 * 14 13 11 16 16 C 1.53298 * 109.22028 * 62.58781 * 15 14 13 17 17 N 1.47148 * 109.68400 * 299.33142 * 11 10 9 18 18 C 1.36942 * 120.98107 * 9.71755 * 17 11 10 19 19 H 1.07995 * 119.99622 * 328.32916 * 18 17 11 20 20 C 1.38813 * 119.99611 * 148.32693 * 18 17 11 21 21 N 1.31615 * 120.00138 * 349.26473 * 20 18 17 22 22 Si 1.86800 * 119.99551 * 169.26916 * 20 18 17 23 23 H 1.48502 * 109.47355 * 89.99927 * 22 20 18 24 24 H 1.48505 * 109.46833 * 209.99918 * 22 20 18 25 25 H 1.48497 * 109.47040 * 329.99443 * 22 20 18 26 26 C 1.41296 * 107.17169 * 0.02562 * 6 5 4 27 27 N 1.30452 * 108.02143 * 0.02562 * 26 6 5 28 28 H 1.09006 * 109.47303 * 60.00258 * 1 2 3 29 29 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 300.00015 * 1 2 3 31 31 H 1.09001 * 109.47316 * 239.99985 * 2 1 3 32 32 H 1.08992 * 109.47522 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47150 * 300.00216 * 3 2 1 34 34 H 1.09004 * 109.46594 * 59.99625 * 3 2 1 35 35 H 1.07997 * 126.28690 * 359.73966 * 5 4 2 36 36 H 0.96997 * 119.99832 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.47118 * 300.00383 * 10 9 7 38 38 H 1.09001 * 109.46950 * 60.00039 * 10 9 7 39 39 H 1.08991 * 109.51591 * 291.95271 * 13 11 10 40 40 H 1.09003 * 109.50884 * 52.10841 * 13 11 10 41 41 H 1.08998 * 109.51686 * 302.65994 * 15 14 13 42 42 H 1.09001 * 109.55534 * 182.53127 * 15 14 13 43 43 H 1.09000 * 109.68132 * 187.97615 * 16 15 14 44 44 H 1.08994 * 109.71732 * 67.43708 * 16 15 14 45 45 H 0.97003 * 119.99921 * 180.02562 * 21 20 18 46 46 H 1.07996 * 125.99216 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1903 -0.1362 2.4068 6 6 2.6571 -1.1237 3.2510 7 6 2.9860 -0.9702 4.6799 8 8 2.8528 0.1102 5.2217 9 7 3.4342 -2.0274 5.3856 10 6 3.7615 -1.8747 6.8053 11 6 4.2427 -3.2150 7.3647 12 1 5.1283 -3.5431 6.8205 13 6 4.5772 -3.0631 8.8530 14 8 4.8457 -4.3525 9.4090 15 6 3.7353 -5.2519 9.3646 16 6 3.3579 -5.5159 7.9025 17 7 3.1768 -4.2203 7.2287 18 6 2.0493 -3.9576 6.4972 19 1 1.6647 -2.9501 6.4410 20 6 1.4009 -4.9865 5.8279 21 7 1.9759 -6.1653 5.7181 22 14 -0.2877 -4.6979 5.0831 23 1 -0.1369 -4.2179 3.6859 24 1 -1.0554 -5.9690 5.0897 25 1 -1.0130 -3.6774 5.8816 26 6 2.7607 -2.3091 2.4891 27 7 2.3799 -2.0404 1.2707 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.9986 0.8931 2.6716 36 1 3.5401 -2.8893 4.9534 37 1 4.5489 -1.1295 6.9186 38 1 2.8744 -1.5516 7.3500 39 1 5.4556 -2.4278 8.9658 40 1 3.7314 -2.6118 9.3719 41 1 2.8866 -4.8085 9.8854 42 1 4.0073 -6.1914 9.8457 43 1 2.4290 -6.0847 7.8601 44 1 4.1541 -6.0763 7.4126 45 1 1.5230 -6.8842 5.2501 46 1 3.0971 -3.2692 2.8516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051208151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:14 Heat of formation + Delta-G solvation = 22.463928 kcal Electronic energy + Delta-G solvation = -28383.779138 eV Core-core repulsion = 24504.244315 eV Total energy + Delta-G solvation = -3879.534823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21564 -38.98797 -38.08032 -35.85650 -35.23290 -33.49298 -31.59287 -30.51526 -30.28928 -29.73779 -27.65385 -27.17707 -25.63441 -23.44704 -23.30623 -22.02418 -21.49752 -19.88278 -19.72631 -19.45751 -17.75858 -16.60678 -15.85106 -15.66176 -15.49363 -15.44488 -14.87916 -14.81914 -14.56447 -14.27398 -14.10751 -13.81340 -13.63337 -13.31425 -13.02474 -12.87360 -12.84353 -12.56750 -12.43881 -12.35648 -11.81953 -11.67096 -11.53070 -11.47555 -11.02097 -10.83710 -10.81444 -10.68133 -10.37924 -10.23467 -10.01905 -9.63153 -9.39632 -9.36035 -8.93785 -8.64579 -8.51371 -8.09127 -6.68953 -5.88039 -3.37698 1.78454 2.39290 2.52333 3.32300 3.40243 3.43359 3.90323 4.05141 4.26957 4.38781 4.55416 4.56710 4.73065 4.82312 5.02032 5.13103 5.18970 5.26724 5.30245 5.33541 5.48058 5.53636 5.60069 5.65324 5.75663 5.80742 5.83672 5.87610 6.00819 6.08181 6.17917 6.20010 6.29658 6.36125 6.55706 6.68861 6.80863 6.98547 7.09719 7.21651 7.50924 7.75208 7.76205 7.89303 8.31506 8.37219 8.96464 9.09239 9.69192 10.28497 11.18453 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.004079 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.288157 B = 6862.589450 C = 8062.220991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.153 3.847 3 C -0.166 4.166 4 N -0.362 5.362 5 C 0.118 3.882 6 C -0.281 4.281 7 C 0.588 3.412 8 O -0.575 6.575 9 N -0.690 5.690 10 C 0.138 3.862 11 C 0.125 3.875 12 H 0.042 0.958 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.074 0.926 20 C 0.013 3.987 21 N -0.899 5.899 22 Si 0.892 3.108 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.091 3.909 27 N -0.303 5.303 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.182 0.818 36 H 0.414 0.586 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.029 0.971 45 H 0.255 0.745 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 10.394 -7.633 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 C -0.225 4.225 4 N -0.143 5.143 5 C -0.033 4.033 6 C -0.296 4.296 7 C 0.375 3.625 8 O -0.457 6.457 9 N -0.341 5.341 10 C 0.014 3.986 11 C 0.018 3.982 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.543 5.543 22 Si 0.721 3.279 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.205 1.205 26 C -0.097 4.097 27 N -0.122 5.122 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.199 0.801 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.977 10.504 -8.566 13.589 hybrid contribution -1.176 -0.148 0.084 1.188 sum -0.199 10.356 -8.482 13.387 Atomic orbital electron populations 1.22263 0.93512 1.03601 1.03136 1.21308 0.94954 0.92762 0.85813 1.22227 1.02474 0.93946 1.03810 1.48711 1.49530 1.07669 1.08341 1.22755 0.96408 0.99446 0.84684 1.20354 1.18829 0.94306 0.96077 1.17185 0.76832 0.83898 0.84556 1.90691 1.56306 1.26966 1.71766 1.45765 1.65126 1.12698 1.10479 1.21135 0.99733 0.96247 0.81508 1.21435 0.92750 0.89890 0.94159 0.94087 1.22869 1.00107 0.85073 0.94263 1.87797 1.37895 1.23890 1.81553 1.23347 0.88417 0.92318 1.00235 1.21398 1.01399 0.88044 0.87254 1.44090 1.17341 1.12167 1.58097 1.19219 1.01049 0.95073 1.22944 0.90883 1.25099 0.98807 0.96781 0.97998 1.69975 1.37089 1.02662 1.44579 0.86447 0.84645 0.77084 0.79681 1.20893 1.21631 1.20548 1.24222 0.96326 0.99110 0.90007 1.77164 1.21616 0.92394 1.21005 0.90433 0.91417 0.91691 0.87778 0.91311 0.89911 0.91268 0.80146 0.74802 0.92344 0.91552 0.89917 0.93506 0.94147 0.90295 0.89096 0.95242 0.93479 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.52 37.16 0.35 -1.10 16 2 C 0.15 1.46 3.91 -67.93 -0.27 1.19 16 3 C -0.17 -1.15 8.83 37.16 0.33 -0.82 16 4 N -0.36 -5.03 3.50 -54.31 -0.19 -5.22 16 5 C 0.12 1.74 10.39 -16.56 -0.17 1.57 16 6 C -0.28 -4.92 6.13 -105.07 -0.64 -5.57 16 7 C 0.59 11.48 7.81 -12.52 -0.10 11.38 16 8 O -0.58 -12.40 16.90 5.27 0.09 -12.31 16 9 N -0.69 -13.31 3.78 -61.39 -0.23 -13.54 16 10 C 0.14 2.58 4.45 -4.04 -0.02 2.56 16 11 C 0.12 2.43 3.21 -67.42 -0.22 2.22 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 O -0.39 -7.63 10.74 -35.23 -0.38 -8.01 16 15 C 0.03 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.27 5.38 -3.53 -0.02 3.25 16 17 N -0.59 -13.54 3.03 -164.30 -0.50 -14.04 16 18 C -0.25 -6.25 7.04 -15.06 -0.11 -6.36 16 19 H 0.07 1.86 5.84 -52.49 -0.31 1.56 16 20 C 0.01 0.33 5.06 -17.43 -0.09 0.24 16 21 N -0.90 -24.03 11.17 55.49 0.62 -23.41 16 22 Si 0.89 21.17 29.57 -169.99 -5.03 16.14 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.09 1.58 11.50 -16.98 -0.20 1.38 16 27 N -0.30 -5.09 12.50 30.86 0.39 -4.70 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.47 7.13 -51.93 -0.37 0.10 16 35 H 0.18 2.22 7.23 -52.49 -0.38 1.84 16 36 H 0.41 8.25 6.28 -40.82 -0.26 8.00 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.35 7.56 -51.93 -0.39 0.95 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.26 6.37 -51.93 -0.33 1.93 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.19 3.22 7.50 -52.49 -0.39 2.83 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -30.98 371.04 -7.34 -38.32 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.06 Total: 9.07 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.65 Total: 12.10 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.09 Total: -60.91 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.29 Total: -20.33 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.98 -7.34 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051208151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.786 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds