Wall clock time and date at job start Tue Mar 31 2020 13:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 N 1.46496 * 109.47264 * 120.00007 * 2 1 3 5 5 C 1.34267 * 125.75428 * 275.00034 * 4 2 1 6 6 C 1.38041 * 107.41861 * 179.73621 * 5 4 2 7 7 C 1.47428 * 126.41751 * 180.02562 * 6 5 4 8 8 O 1.21606 * 119.99497 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00320 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00122 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47012 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.67542 * 59.85028 * 11 10 9 13 13 C 1.53301 * 109.67903 * 180.40016 * 11 10 9 14 14 O 1.42964 * 109.21861 * 172.02490 * 13 11 10 15 15 C 1.42959 * 114.16791 * 297.41955 * 14 13 11 16 16 C 1.53298 * 109.22028 * 62.58781 * 15 14 13 17 17 N 1.47148 * 109.68400 * 299.33142 * 11 10 9 18 18 C 1.36942 * 120.98107 * 9.71755 * 17 11 10 19 19 H 1.07995 * 119.99622 * 328.32916 * 18 17 11 20 20 C 1.38813 * 119.99611 * 148.32693 * 18 17 11 21 21 N 1.31615 * 120.00138 * 349.26473 * 20 18 17 22 22 Si 1.86800 * 119.99551 * 169.26916 * 20 18 17 23 23 H 1.48502 * 109.47355 * 89.99927 * 22 20 18 24 24 H 1.48505 * 109.46833 * 209.99918 * 22 20 18 25 25 H 1.48497 * 109.47040 * 329.99443 * 22 20 18 26 26 C 1.41296 * 107.17169 * 0.02562 * 6 5 4 27 27 N 1.30452 * 108.02143 * 0.02562 * 26 6 5 28 28 H 1.09006 * 109.47303 * 60.00258 * 1 2 3 29 29 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 300.00015 * 1 2 3 31 31 H 1.09001 * 109.47316 * 239.99985 * 2 1 3 32 32 H 1.08992 * 109.47522 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47150 * 300.00216 * 3 2 1 34 34 H 1.09004 * 109.46594 * 59.99625 * 3 2 1 35 35 H 1.07997 * 126.28690 * 359.73966 * 5 4 2 36 36 H 0.96997 * 119.99832 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.47118 * 300.00383 * 10 9 7 38 38 H 1.09001 * 109.46950 * 60.00039 * 10 9 7 39 39 H 1.08991 * 109.51591 * 291.95271 * 13 11 10 40 40 H 1.09003 * 109.50884 * 52.10841 * 13 11 10 41 41 H 1.08998 * 109.51686 * 302.65994 * 15 14 13 42 42 H 1.09001 * 109.55534 * 182.53127 * 15 14 13 43 43 H 1.09000 * 109.68132 * 187.97615 * 16 15 14 44 44 H 1.08994 * 109.71732 * 67.43708 * 16 15 14 45 45 H 0.97003 * 119.99921 * 180.02562 * 21 20 18 46 46 H 1.07996 * 125.99216 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1903 -0.1362 2.4068 6 6 2.6571 -1.1237 3.2510 7 6 2.9860 -0.9702 4.6799 8 8 2.8528 0.1102 5.2217 9 7 3.4342 -2.0274 5.3856 10 6 3.7615 -1.8747 6.8053 11 6 4.2427 -3.2150 7.3647 12 1 5.1283 -3.5431 6.8205 13 6 4.5772 -3.0631 8.8530 14 8 4.8457 -4.3525 9.4090 15 6 3.7353 -5.2519 9.3646 16 6 3.3579 -5.5159 7.9025 17 7 3.1768 -4.2203 7.2287 18 6 2.0493 -3.9576 6.4972 19 1 1.6647 -2.9501 6.4410 20 6 1.4009 -4.9865 5.8279 21 7 1.9759 -6.1653 5.7181 22 14 -0.2877 -4.6979 5.0831 23 1 -0.1369 -4.2179 3.6859 24 1 -1.0554 -5.9690 5.0897 25 1 -1.0130 -3.6774 5.8816 26 6 2.7607 -2.3091 2.4891 27 7 2.3799 -2.0404 1.2707 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 1.9986 0.8931 2.6716 36 1 3.5401 -2.8893 4.9534 37 1 4.5489 -1.1295 6.9186 38 1 2.8744 -1.5516 7.3500 39 1 5.4556 -2.4278 8.9658 40 1 3.7314 -2.6118 9.3719 41 1 2.8866 -4.8085 9.8854 42 1 4.0073 -6.1914 9.8457 43 1 2.4290 -6.0847 7.8601 44 1 4.1541 -6.0763 7.4126 45 1 1.5230 -6.8842 5.2501 46 1 3.0971 -3.2692 2.8516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051208151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:13 Heat of formation + Delta-G solvation = 1.922339 kcal Electronic energy + Delta-G solvation = -28384.669888 eV Core-core repulsion = 24504.244315 eV Total energy + Delta-G solvation = -3880.425573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43520 -40.55063 -39.63025 -36.88218 -36.72810 -35.23095 -33.28221 -32.20245 -31.46959 -30.98779 -28.95963 -28.26901 -27.11603 -25.22037 -24.51969 -23.34898 -23.01543 -21.38245 -20.96618 -20.86507 -19.14814 -18.24549 -17.54526 -17.21566 -16.76197 -16.50600 -16.33984 -16.22540 -16.05897 -15.85629 -15.36919 -15.25581 -15.02928 -14.93686 -14.58169 -14.17236 -13.92093 -13.85287 -13.45670 -13.23419 -13.11259 -13.07029 -12.89866 -12.72098 -12.47027 -12.41291 -12.31919 -12.16099 -11.96679 -11.95004 -11.82726 -11.26718 -10.91298 -10.60384 -10.58080 -10.53169 -9.95640 -9.54107 -8.57769 -7.85584 -5.35460 0.56127 1.14534 1.36695 1.38993 1.44819 1.48806 2.40848 2.49267 2.59887 3.07382 3.31253 3.41187 3.49514 3.75616 3.83865 3.90363 4.04750 4.08793 4.16293 4.26987 4.35857 4.37624 4.51055 4.59864 4.62817 4.67443 4.68699 4.69590 4.72871 4.77778 4.83975 4.87088 5.04780 5.12682 5.15776 5.18364 5.34349 5.38447 5.63020 5.69210 5.73673 5.92775 6.33076 6.40490 6.50484 6.80796 7.14165 7.42344 7.79375 8.35537 9.18790 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.004079 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.288157 B = 6862.589450 C = 8062.220991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 C -0.160 4.160 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.312 4.312 7 C 0.589 3.411 8 O -0.599 6.599 9 N -0.694 5.694 10 C 0.144 3.856 11 C 0.126 3.874 12 H 0.038 0.962 13 C 0.058 3.942 14 O -0.397 6.397 15 C 0.046 3.954 16 C 0.150 3.850 17 N -0.605 5.605 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.024 4.024 21 N -0.923 5.923 22 Si 0.937 3.063 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.081 3.919 27 N -0.323 5.323 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.209 0.791 36 H 0.409 0.591 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.007 0.993 45 H 0.249 0.751 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 12.551 -8.016 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 C -0.218 4.218 4 N -0.130 5.130 5 C -0.019 4.019 6 C -0.326 4.326 7 C 0.377 3.623 8 O -0.483 6.483 9 N -0.343 5.343 10 C 0.019 3.981 11 C 0.020 3.980 12 H 0.055 0.945 13 C -0.021 4.021 14 O -0.316 6.316 15 C -0.032 4.032 16 C 0.024 3.976 17 N -0.331 5.331 18 C -0.366 4.366 19 H 0.084 0.916 20 C -0.221 4.221 21 N -0.569 5.569 22 Si 0.767 3.233 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.210 1.210 26 C -0.106 4.106 27 N -0.143 5.143 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.225 0.775 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.059 0.941 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.107 12.669 -8.957 15.555 hybrid contribution -1.209 -0.729 0.118 1.417 sum -0.102 11.940 -8.839 14.856 Atomic orbital electron populations 1.22260 0.92598 1.02520 1.04694 1.21828 0.95668 0.94124 0.84270 1.22239 1.02138 0.91915 1.05509 1.49156 1.47833 1.06681 1.09360 1.23113 0.94420 0.99973 0.84363 1.20330 1.21389 0.95379 0.95547 1.17419 0.76154 0.83407 0.85273 1.90661 1.57531 1.27624 1.72460 1.45798 1.65213 1.12514 1.10734 1.21118 0.99687 0.96226 0.81034 1.21566 0.91422 0.89214 0.95846 0.94482 1.22991 1.01935 0.84878 0.92267 1.87802 1.37864 1.24480 1.81439 1.23208 0.88730 0.93626 0.97589 1.21230 0.99316 0.87571 0.89472 1.44292 1.17882 1.12884 1.58042 1.19204 1.01271 0.94389 1.21726 0.91596 1.25466 1.00652 0.96908 0.99066 1.70074 1.37819 1.03076 1.45915 0.85753 0.82566 0.76302 0.78690 1.21518 1.22148 1.20953 1.24159 0.96906 0.99120 0.90404 1.77095 1.22148 0.94356 1.20736 0.87074 0.93770 0.91945 0.87153 0.91816 0.86922 0.90866 0.77488 0.75359 0.90034 0.93123 0.86367 0.93206 0.93834 0.87804 0.91715 0.97464 0.94116 0.79739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.52 71.98 0.69 -1.77 16 2 C 0.14 2.36 3.91 44.99 0.18 2.53 16 3 C -0.16 -1.68 8.83 71.98 0.64 -1.04 16 4 N -0.35 -9.30 3.50 -325.75 -1.14 -10.44 16 5 C 0.13 3.78 10.39 84.27 0.88 4.66 16 6 C -0.31 -10.89 6.13 -20.15 -0.12 -11.02 16 7 C 0.59 22.95 7.81 86.66 0.68 23.62 16 8 O -0.60 -25.46 16.90 -4.05 -0.07 -25.52 16 9 N -0.69 -26.86 3.78 -466.38 -1.76 -28.62 16 10 C 0.14 5.25 4.45 86.38 0.38 5.63 16 11 C 0.13 4.79 3.21 44.97 0.14 4.94 16 12 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 13 C 0.06 1.91 6.29 72.08 0.45 2.36 16 14 O -0.40 -14.55 10.74 -148.98 -1.60 -16.15 16 15 C 0.05 1.71 6.98 72.08 0.50 2.22 16 16 C 0.15 6.81 5.38 86.35 0.46 7.28 16 17 N -0.61 -27.78 3.03 -673.73 -2.04 -29.82 16 18 C -0.24 -11.76 7.04 84.03 0.59 -11.17 16 19 H 0.07 3.39 5.84 -2.91 -0.02 3.38 16 20 C -0.02 -1.25 5.06 84.86 0.43 -0.82 16 21 N -0.92 -50.63 11.17 21.65 0.24 -50.39 16 22 Si 0.94 44.47 29.57 68.60 2.03 46.49 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 26 C 0.08 2.87 11.50 85.65 0.99 3.86 16 27 N -0.32 -10.86 12.50 -56.27 -0.70 -11.56 16 28 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.74 7.13 -2.38 -0.02 0.72 16 35 H 0.21 4.60 7.23 -2.91 -0.02 4.58 16 36 H 0.41 16.70 6.28 -92.71 -0.58 16.11 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.05 2.02 7.56 -2.39 -0.02 2.00 16 39 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.06 3.29 6.37 -2.39 -0.02 3.27 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 46 H 0.19 6.56 7.50 -2.91 -0.02 6.53 16 Total: -1.00 -67.26 371.04 2.24 -65.02 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.41 Total: 29.71 kcal Atomic # 6 Polarization: 24.40 SS G_CDS: 6.88 Total: 31.28 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.40 Total: -130.82 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.67 Total: -41.67 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.26 2.24 -65.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051208151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.940 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds