Wall clock time and date at job start Tue Mar 31 2020 14:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00406 * 2 1 4 4 C 1.53001 * 109.47019 * 184.99177 * 3 2 1 5 5 N 1.46505 * 109.46858 * 175.00155 * 4 3 2 6 6 N 1.28442 * 125.19325 * 94.99293 * 5 4 3 7 7 C 1.30864 * 110.92842 * 179.97438 * 6 5 4 8 8 C 1.39677 * 107.85946 * 0.02562 * 7 6 5 9 9 C 1.36601 * 125.18492 * 274.68167 * 5 4 3 10 10 C 1.47156 * 126.89068 * 0.02562 * 9 5 4 11 11 O 1.21634 * 119.99735 * 6.48112 * 10 9 5 12 12 N 1.34772 * 120.00759 * 186.47928 * 10 9 5 13 13 C 1.47016 * 125.65373 * 185.85087 * 12 10 9 14 14 C 1.54331 * 107.27302 * 181.02107 * 13 12 10 15 15 H 1.08999 * 110.72424 * 263.83122 * 14 13 12 16 16 C 1.52999 * 110.71659 * 140.55622 * 14 13 12 17 17 C 1.55159 * 102.94022 * 22.19778 * 14 13 12 18 18 H 1.09002 * 111.00154 * 206.42298 * 17 14 13 19 19 N 1.46496 * 111.00386 * 82.56948 * 17 14 13 20 20 C 1.36940 * 119.99693 * 159.60912 * 19 17 14 21 21 H 1.07997 * 120.00339 * 5.00225 * 20 19 17 22 22 C 1.38813 * 120.00156 * 185.00696 * 20 19 17 23 23 N 1.31625 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46920 * 90.00233 * 24 22 20 26 26 H 1.48503 * 109.46996 * 210.00101 * 24 22 20 27 27 H 1.48502 * 109.46801 * 330.00166 * 24 22 20 28 28 C 1.47433 * 125.64534 * 5.54644 * 12 10 9 29 29 H 1.09006 * 109.47120 * 55.00825 * 1 2 3 30 30 H 1.08999 * 109.47563 * 175.00826 * 1 2 3 31 31 H 1.09001 * 109.46868 * 295.01258 * 1 2 3 32 32 H 1.08995 * 109.47617 * 64.98888 * 3 2 1 33 33 H 1.09000 * 109.47122 * 304.98563 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.99846 * 4 3 2 35 35 H 1.08999 * 109.47536 * 55.00380 * 4 3 2 36 36 H 1.07998 * 126.07029 * 179.97438 * 7 6 5 37 37 H 1.07998 * 127.31453 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.88272 * 300.44285 * 13 12 10 39 39 H 1.09002 * 109.88309 * 61.45238 * 13 12 10 40 40 H 1.08999 * 109.47282 * 61.46073 * 16 14 13 41 41 H 1.09006 * 109.47180 * 181.45521 * 16 14 13 42 42 H 1.08997 * 109.47683 * 301.45249 * 16 14 13 43 43 H 0.97002 * 120.00630 * 339.60351 * 19 17 14 44 44 H 0.96996 * 120.00067 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.36382 * 274.74899 * 28 12 10 46 46 H 1.09005 * 110.36815 * 37.06543 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1867 -0.1255 5 7 4.1164 2.5240 -0.2456 6 7 4.5860 3.2167 0.7289 7 6 5.0404 4.3691 0.3069 8 6 4.8449 4.4266 -1.0749 9 6 4.2522 3.2221 -1.4118 10 6 3.8461 2.7833 -2.7564 11 8 3.2241 1.7473 -2.8960 12 7 4.1632 3.5290 -3.8333 13 6 3.7200 3.2754 -5.2119 14 6 4.3484 4.3672 -6.1035 15 1 3.6471 5.1863 -6.2624 16 6 4.8065 3.7780 -7.4391 17 6 5.5658 4.8413 -5.2663 18 1 5.8294 5.8708 -5.5086 19 7 6.7124 3.9494 -5.4554 20 6 7.9764 4.3880 -5.1635 21 1 8.1209 5.3613 -4.7183 22 6 9.0720 3.5817 -5.4399 23 7 8.8959 2.3953 -5.9821 24 14 10.7963 4.1802 -5.0423 25 1 11.1565 3.7701 -3.6613 26 1 11.7604 3.5856 -6.0027 27 1 10.8426 5.6608 -5.1471 28 6 5.0070 4.7380 -3.8229 29 1 -0.3634 0.5894 -0.8419 30 1 -0.3634 -1.0237 -0.0894 31 1 -0.3633 0.4345 0.9313 32 1 1.7612 1.8141 0.9312 33 1 1.6198 1.8770 -0.8420 34 1 3.9307 0.6928 0.7599 35 1 3.7774 0.6010 -1.0111 36 1 5.4866 5.1392 0.9186 37 1 5.1057 5.2367 -1.7398 38 1 4.0598 2.2916 -5.5355 39 1 2.6327 3.3287 -5.2675 40 1 3.9464 3.3713 -7.9709 41 1 5.2697 4.5596 -8.0413 42 1 5.5299 2.9833 -7.2567 43 1 6.5764 3.0481 -5.7873 44 1 9.6614 1.8320 -6.1755 45 1 4.4083 5.6163 -3.5815 46 1 5.8222 4.6255 -3.1081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054767315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:20 Heat of formation + Delta-G solvation = 30.128307 kcal Electronic energy + Delta-G solvation = -28294.865264 eV Core-core repulsion = 24415.662794 eV Total energy + Delta-G solvation = -3879.202470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48847 -39.64908 -38.14999 -37.53250 -34.24642 -33.68494 -32.60737 -30.87258 -30.30908 -29.36318 -27.90105 -26.50724 -26.23199 -24.15116 -23.64607 -22.95317 -21.55041 -21.13872 -19.34024 -19.23549 -17.60617 -17.09321 -16.59903 -16.35194 -16.21116 -15.82359 -15.72151 -15.09292 -14.73256 -14.60472 -14.09599 -13.98586 -13.83217 -13.62248 -13.22567 -12.97324 -12.71906 -12.62791 -12.25667 -12.19977 -11.97146 -11.66009 -11.55417 -11.49391 -11.14591 -10.95799 -10.86634 -10.67311 -10.44341 -10.26952 -10.00423 -9.91849 -9.82105 -9.69799 -9.17079 -9.03890 -8.92735 -8.32343 -7.05861 -5.85515 -3.16038 1.37713 2.24050 2.69065 3.16395 3.39012 3.43034 3.44308 3.46210 3.80767 4.49407 4.50963 4.55871 4.74618 4.93746 4.98326 5.08737 5.09627 5.13889 5.15943 5.26147 5.28448 5.43419 5.48283 5.51822 5.57306 5.59213 5.69274 5.74234 5.83892 5.87217 5.90870 6.11240 6.16381 6.30918 6.31396 6.44950 6.49037 6.58924 6.70338 6.71855 6.88330 6.91149 7.62160 7.72544 8.08099 8.31883 8.32460 9.44158 9.98714 10.33057 11.36351 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003814 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.913513 B = 7339.524613 C = 8272.780844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.058 3.942 4 C 0.125 3.875 5 N -0.260 5.260 6 N -0.281 5.281 7 C -0.003 4.003 8 C -0.190 4.190 9 C -0.023 4.023 10 C 0.599 3.401 11 O -0.551 6.551 12 N -0.584 5.584 13 C 0.120 3.880 14 C -0.114 4.114 15 H 0.081 0.919 16 C -0.133 4.133 17 C 0.171 3.829 18 H 0.074 0.926 19 N -0.708 5.708 20 C -0.248 4.248 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.927 5.927 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.056 3.944 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.061 0.939 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.145 3.479 8.068 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.302 6.302 3 C -0.020 4.020 4 C 0.004 3.996 5 N -0.049 5.049 6 N -0.113 5.113 7 C -0.179 4.179 8 C -0.218 4.218 9 C -0.151 4.151 10 C 0.387 3.613 11 O -0.431 6.431 12 N -0.316 5.316 13 C -0.003 4.003 14 C -0.133 4.133 15 H 0.099 0.901 16 C -0.191 4.191 17 C 0.059 3.941 18 H 0.092 0.908 19 N -0.348 5.348 20 C -0.379 4.379 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.574 5.574 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.070 4.070 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.204 0.796 37 H 0.190 0.810 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.404 1.979 9.022 17.961 hybrid contribution 0.943 0.741 -0.443 1.278 sum -14.461 2.719 8.579 17.032 Atomic orbital electron populations 1.22757 0.80315 1.02980 1.00086 1.87790 1.20233 1.26668 1.95493 1.22618 0.92702 0.85616 1.01027 1.21711 0.92459 0.78715 1.06696 1.45404 1.42102 1.14460 1.02912 1.73169 1.15012 1.06322 1.16823 1.23604 1.04368 0.95564 0.94400 1.22830 1.04129 0.98271 0.96600 1.21370 1.09641 0.94990 0.89074 1.16462 0.79773 0.83022 0.82057 1.90786 1.42800 1.23288 1.86190 1.47903 1.49108 1.27941 1.06603 1.22004 0.98107 0.99914 0.80226 1.22524 0.97908 0.97225 0.95690 0.90105 1.21624 1.00576 1.02010 0.94912 1.21401 0.87369 0.95611 0.89760 0.90775 1.42383 1.00973 1.13692 1.77800 1.19199 0.83249 1.01050 1.34411 0.90970 1.24769 0.97960 0.96616 1.01008 1.69661 1.29849 1.09863 1.48065 0.86214 0.84580 0.77903 0.77593 1.21683 1.21781 1.20620 1.23922 0.93670 0.85384 1.04054 0.93733 0.89287 0.94107 0.92835 0.92035 0.87589 0.86208 0.79644 0.81021 0.91087 0.92080 0.93683 0.92181 0.90870 0.77738 0.93370 0.92050 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -4.95 10.70 -35.23 -0.38 -5.32 16 3 C 0.06 0.75 6.17 37.16 0.23 0.98 16 4 C 0.12 1.76 5.97 -4.04 -0.02 1.74 16 5 N -0.26 -4.08 3.35 -57.14 -0.19 -4.27 16 6 N -0.28 -4.29 11.90 30.59 0.36 -3.92 16 7 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 8 C -0.19 -2.75 9.27 -38.98 -0.36 -3.11 16 9 C -0.02 -0.38 6.89 -82.06 -0.57 -0.95 16 10 C 0.60 10.80 7.81 -12.64 -0.10 10.70 16 11 O -0.55 -10.85 14.71 5.25 0.08 -10.78 16 12 N -0.58 -9.81 3.32 -171.74 -0.57 -10.38 16 13 C 0.12 1.87 6.46 -3.06 -0.02 1.85 16 14 C -0.11 -1.65 3.42 -88.78 -0.30 -1.95 16 15 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.13 -2.03 8.80 37.16 0.33 -1.70 16 17 C 0.17 2.96 3.45 -65.67 -0.23 2.73 16 18 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 19 N -0.71 -16.08 4.68 -51.24 -0.24 -16.32 16 20 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.06 0.87 4.84 -2.41 -0.01 0.86 16 29 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.87 7.67 -51.93 -0.40 0.47 16 34 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.12 1.89 6.75 -51.93 -0.35 1.53 16 36 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.17 2.19 4.99 -52.49 -0.26 1.93 16 38 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.35 6.24 -51.93 -0.32 1.03 16 43 H 0.39 9.64 6.11 -40.82 -0.25 9.39 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.06 0.78 7.78 -51.93 -0.40 0.37 16 46 H 0.09 1.60 5.93 -51.93 -0.31 1.29 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -31.70 373.06 -6.91 -38.60 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.90 Total: 10.94 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.40 Total: 5.55 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.09 Total: -61.20 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.30 Total: -16.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.70 -6.91 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.733 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds