Wall clock time and date at job start Tue Mar 31 2020 14:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00406 * 2 1 4 4 C 1.53001 * 109.47019 * 184.99177 * 3 2 1 5 5 N 1.46505 * 109.46858 * 175.00155 * 4 3 2 6 6 N 1.28442 * 125.19325 * 94.99293 * 5 4 3 7 7 C 1.30864 * 110.92842 * 179.97438 * 6 5 4 8 8 C 1.39677 * 107.85946 * 0.02562 * 7 6 5 9 9 C 1.36601 * 125.18492 * 274.68167 * 5 4 3 10 10 C 1.47156 * 126.89068 * 0.02562 * 9 5 4 11 11 O 1.21634 * 119.99735 * 6.48112 * 10 9 5 12 12 N 1.34772 * 120.00759 * 186.47928 * 10 9 5 13 13 C 1.47016 * 125.65373 * 185.85087 * 12 10 9 14 14 C 1.54331 * 107.27302 * 181.02107 * 13 12 10 15 15 H 1.08999 * 110.72424 * 263.83122 * 14 13 12 16 16 C 1.52999 * 110.71659 * 140.55622 * 14 13 12 17 17 C 1.55159 * 102.94022 * 22.19778 * 14 13 12 18 18 H 1.09002 * 111.00154 * 206.42298 * 17 14 13 19 19 N 1.46496 * 111.00386 * 82.56948 * 17 14 13 20 20 C 1.36940 * 119.99693 * 159.60912 * 19 17 14 21 21 H 1.07997 * 120.00339 * 5.00225 * 20 19 17 22 22 C 1.38813 * 120.00156 * 185.00696 * 20 19 17 23 23 N 1.31625 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46920 * 90.00233 * 24 22 20 26 26 H 1.48503 * 109.46996 * 210.00101 * 24 22 20 27 27 H 1.48502 * 109.46801 * 330.00166 * 24 22 20 28 28 C 1.47433 * 125.64534 * 5.54644 * 12 10 9 29 29 H 1.09006 * 109.47120 * 55.00825 * 1 2 3 30 30 H 1.08999 * 109.47563 * 175.00826 * 1 2 3 31 31 H 1.09001 * 109.46868 * 295.01258 * 1 2 3 32 32 H 1.08995 * 109.47617 * 64.98888 * 3 2 1 33 33 H 1.09000 * 109.47122 * 304.98563 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.99846 * 4 3 2 35 35 H 1.08999 * 109.47536 * 55.00380 * 4 3 2 36 36 H 1.07998 * 126.07029 * 179.97438 * 7 6 5 37 37 H 1.07998 * 127.31453 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.88272 * 300.44285 * 13 12 10 39 39 H 1.09002 * 109.88309 * 61.45238 * 13 12 10 40 40 H 1.08999 * 109.47282 * 61.46073 * 16 14 13 41 41 H 1.09006 * 109.47180 * 181.45521 * 16 14 13 42 42 H 1.08997 * 109.47683 * 301.45249 * 16 14 13 43 43 H 0.97002 * 120.00630 * 339.60351 * 19 17 14 44 44 H 0.96996 * 120.00067 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.36382 * 274.74899 * 28 12 10 46 46 H 1.09005 * 110.36815 * 37.06543 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1867 -0.1255 5 7 4.1164 2.5240 -0.2456 6 7 4.5860 3.2167 0.7289 7 6 5.0404 4.3691 0.3069 8 6 4.8449 4.4266 -1.0749 9 6 4.2522 3.2221 -1.4118 10 6 3.8461 2.7833 -2.7564 11 8 3.2241 1.7473 -2.8960 12 7 4.1632 3.5290 -3.8333 13 6 3.7200 3.2754 -5.2119 14 6 4.3484 4.3672 -6.1035 15 1 3.6471 5.1863 -6.2624 16 6 4.8065 3.7780 -7.4391 17 6 5.5658 4.8413 -5.2663 18 1 5.8294 5.8708 -5.5086 19 7 6.7124 3.9494 -5.4554 20 6 7.9764 4.3880 -5.1635 21 1 8.1209 5.3613 -4.7183 22 6 9.0720 3.5817 -5.4399 23 7 8.8959 2.3953 -5.9821 24 14 10.7963 4.1802 -5.0423 25 1 11.1565 3.7701 -3.6613 26 1 11.7604 3.5856 -6.0027 27 1 10.8426 5.6608 -5.1471 28 6 5.0070 4.7380 -3.8229 29 1 -0.3634 0.5894 -0.8419 30 1 -0.3634 -1.0237 -0.0894 31 1 -0.3633 0.4345 0.9313 32 1 1.7612 1.8141 0.9312 33 1 1.6198 1.8770 -0.8420 34 1 3.9307 0.6928 0.7599 35 1 3.7774 0.6010 -1.0111 36 1 5.4866 5.1392 0.9186 37 1 5.1057 5.2367 -1.7398 38 1 4.0598 2.2916 -5.5355 39 1 2.6327 3.3287 -5.2675 40 1 3.9464 3.3713 -7.9709 41 1 5.2697 4.5596 -8.0413 42 1 5.5299 2.9833 -7.2567 43 1 6.5764 3.0481 -5.7873 44 1 9.6614 1.8320 -6.1755 45 1 4.4083 5.6163 -3.5815 46 1 5.8222 4.6255 -3.1081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054767315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:19 Heat of formation + Delta-G solvation = 8.302072 kcal Electronic energy + Delta-G solvation = -28295.811721 eV Core-core repulsion = 24415.662794 eV Total energy + Delta-G solvation = -3880.148927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.63032 -40.97925 -39.14415 -38.88305 -35.77070 -34.99079 -34.02332 -32.43788 -31.65928 -30.39603 -29.40584 -27.56449 -27.27926 -25.87304 -24.86900 -24.23094 -22.73428 -22.39769 -20.66319 -20.44696 -19.36449 -18.32788 -17.81446 -17.61767 -17.21612 -17.00575 -16.93758 -16.39289 -16.25384 -15.77865 -15.57304 -15.30573 -15.08812 -14.79329 -14.59343 -14.38736 -13.94549 -13.86764 -13.55852 -13.36845 -13.17740 -12.94753 -12.88386 -12.76611 -12.64086 -12.38555 -12.24581 -12.14840 -12.03850 -11.74512 -11.46141 -11.33444 -11.18298 -10.90760 -10.84520 -10.34635 -10.07504 -9.68773 -8.91894 -7.90068 -5.17830 0.15266 1.12245 1.50377 1.51125 1.58973 1.59502 1.93038 2.14933 2.59337 2.84787 3.30359 3.41884 3.42218 3.72604 3.74062 3.89627 3.92789 3.97087 4.06092 4.12589 4.15619 4.37947 4.39640 4.42665 4.49047 4.52792 4.61174 4.66255 4.68012 4.75384 4.76972 4.82689 4.86925 4.99500 5.01897 5.21781 5.23870 5.40158 5.47893 5.57887 5.63770 5.64875 5.97115 6.31625 6.40096 6.89028 7.04173 7.38763 8.15005 8.36031 9.33350 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003814 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.913513 B = 7339.524613 C = 8272.780844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.071 3.929 4 C 0.124 3.876 5 N -0.267 5.267 6 N -0.294 5.294 7 C 0.002 3.998 8 C -0.183 4.183 9 C -0.052 4.052 10 C 0.590 3.410 11 O -0.580 6.580 12 N -0.587 5.587 13 C 0.118 3.882 14 C -0.098 4.098 15 H 0.123 0.877 16 C -0.129 4.129 17 C 0.158 3.842 18 H 0.092 0.908 19 N -0.722 5.722 20 C -0.229 4.229 21 H 0.087 0.913 22 C -0.076 4.076 23 N -0.971 5.971 24 Si 0.965 3.035 25 H -0.296 1.296 26 H -0.304 1.304 27 H -0.261 1.261 28 C 0.064 3.936 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.224 0.776 37 H 0.191 0.809 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.106 0.894 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 6.309 9.158 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.007 4.007 4 C 0.003 3.997 5 N -0.056 5.056 6 N -0.125 5.125 7 C -0.174 4.174 8 C -0.211 4.211 9 C -0.179 4.179 10 C 0.379 3.621 11 O -0.461 6.461 12 N -0.318 5.318 13 C -0.004 4.004 14 C -0.117 4.117 15 H 0.141 0.859 16 C -0.186 4.186 17 C 0.048 3.952 18 H 0.109 0.891 19 N -0.361 5.361 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.795 3.205 25 H -0.223 1.223 26 H -0.231 1.231 27 H -0.186 1.186 28 C -0.060 4.060 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.241 0.759 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.205 0.795 44 H 0.055 0.945 45 H 0.124 0.876 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.653 4.881 10.124 20.091 hybrid contribution 1.212 -0.096 -0.766 1.437 sum -15.442 4.784 9.357 18.679 Atomic orbital electron populations 1.22992 0.78485 1.04327 1.00999 1.87762 1.22285 1.26652 1.95613 1.22442 0.91706 0.85645 1.00883 1.21715 0.93533 0.78357 1.06082 1.45517 1.42504 1.14796 1.02829 1.73171 1.15363 1.07075 1.16939 1.24267 1.03199 0.95561 0.94407 1.23126 1.02856 0.97749 0.97401 1.21427 1.11398 0.96295 0.88757 1.16783 0.79583 0.82784 0.82959 1.90761 1.44202 1.24455 1.86728 1.48015 1.48914 1.28157 1.06678 1.22078 0.99334 0.99003 0.79997 1.22519 0.97155 0.97738 0.94280 0.85869 1.21548 1.00525 1.00802 0.95769 1.21749 0.86719 0.95356 0.91378 0.89064 1.42584 1.01828 1.13879 1.77818 1.19668 0.84323 1.00794 1.31346 0.89504 1.25502 1.01454 0.97157 1.02724 1.69831 1.29905 1.11397 1.51055 0.85257 0.80571 0.78266 0.76385 1.22334 1.23148 1.18586 1.23866 0.93738 0.86404 1.02040 0.93829 0.87625 0.92329 0.91436 0.93696 0.86212 0.88629 0.75940 0.79256 0.94039 0.90027 0.91258 0.92125 0.94950 0.79498 0.94510 0.87633 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -10.40 10.70 -148.98 -1.59 -11.99 16 3 C 0.07 1.84 6.17 71.98 0.44 2.28 16 4 C 0.12 3.56 5.97 86.38 0.52 4.08 16 5 N -0.27 -8.30 3.35 -334.68 -1.12 -9.42 16 6 N -0.29 -8.50 11.90 -57.14 -0.68 -9.18 16 7 C 0.00 0.05 12.03 85.18 1.02 1.07 16 8 C -0.18 -4.87 9.27 22.66 0.21 -4.66 16 9 C -0.05 -1.68 6.89 40.78 0.28 -1.40 16 10 C 0.59 21.32 7.81 86.59 0.68 22.00 16 11 O -0.58 -23.58 14.71 -4.14 -0.06 -23.64 16 12 N -0.59 -19.06 3.32 -815.51 -2.71 -21.77 16 13 C 0.12 3.56 6.46 86.73 0.56 4.12 16 14 C -0.10 -2.58 3.42 -9.60 -0.03 -2.61 16 15 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.13 -3.77 8.80 71.98 0.63 -3.14 16 17 C 0.16 5.08 3.45 46.46 0.16 5.24 16 18 H 0.09 2.68 8.12 -2.39 -0.02 2.66 16 19 N -0.72 -32.60 4.68 -316.02 -1.48 -34.08 16 20 C -0.23 -11.60 9.98 84.03 0.84 -10.76 16 21 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 24 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 27 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 28 C 0.06 1.83 4.84 86.93 0.42 2.25 16 29 H 0.04 0.77 8.12 -2.38 -0.02 0.75 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.29 7.67 -2.39 -0.02 1.28 16 34 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 3.20 6.75 -2.39 -0.02 3.18 16 36 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.19 4.19 4.99 -2.91 -0.01 4.18 16 38 H 0.04 1.49 7.82 -2.39 -0.02 1.47 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.03 1.22 6.24 -2.39 -0.01 1.20 16 43 H 0.37 19.08 6.11 -92.71 -0.57 18.51 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.11 2.15 7.78 -2.39 -0.02 2.13 16 46 H 0.08 2.45 5.93 -2.38 -0.01 2.44 16 Total: -1.00 -71.36 373.06 2.54 -68.82 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.43 Total: 36.27 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 7.45 Total: 16.47 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -5.71 Total: -132.75 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.66 Total: -35.63 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.36 2.54 -68.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.121 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds