Wall clock time and date at job start Tue Mar 31 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00324 * 2 1 4 4 C 1.52996 * 109.47492 * 175.00140 * 3 2 1 5 5 N 1.46502 * 109.47042 * 184.99711 * 4 3 2 6 6 N 1.28447 * 125.18586 * 264.66502 * 5 4 3 7 7 C 1.30862 * 110.92603 * 179.81918 * 6 5 4 8 8 C 1.39678 * 107.86205 * 0.43981 * 7 6 5 9 9 C 1.36593 * 125.19466 * 84.97284 * 5 4 3 10 10 C 1.47160 * 126.87978 * 359.97438 * 9 5 4 11 11 O 1.21632 * 120.00258 * 4.66584 * 10 9 5 12 12 N 1.34784 * 119.99965 * 184.67358 * 10 9 5 13 13 C 1.47019 * 125.64421 * 4.15154 * 12 10 9 14 14 C 1.54324 * 107.26887 * 181.02756 * 13 12 10 15 15 H 1.08998 * 110.71865 * 263.82793 * 14 13 12 16 16 N 1.46497 * 110.72407 * 140.55182 * 14 13 12 17 17 C 1.36946 * 119.99554 * 91.22564 * 16 14 13 18 18 H 1.07992 * 120.00135 * 4.99972 * 17 16 14 19 19 C 1.38813 * 119.99477 * 185.00212 * 17 16 14 20 20 N 1.31622 * 119.99451 * 184.96389 * 19 17 16 21 21 Si 1.86800 * 120.00508 * 4.95874 * 19 17 16 22 22 H 1.48495 * 109.46919 * 94.90432 * 21 19 17 23 23 H 1.48499 * 109.47060 * 214.90529 * 21 19 17 24 24 H 1.48501 * 109.46917 * 334.90714 * 21 19 17 25 25 C 1.55161 * 102.94496 * 22.18937 * 14 13 12 26 26 H 1.09001 * 111.00342 * 82.57488 * 25 14 13 27 27 C 1.52992 * 111.00537 * 206.38848 * 25 14 13 28 28 C 1.47421 * 125.64756 * 183.84703 * 12 10 9 29 29 H 1.08994 * 109.47484 * 304.99870 * 1 2 3 30 30 H 1.08998 * 109.46424 * 64.99838 * 1 2 3 31 31 H 1.09002 * 109.46755 * 184.99289 * 1 2 3 32 32 H 1.08997 * 109.46989 * 295.00528 * 3 2 1 33 33 H 1.09002 * 109.46756 * 55.00185 * 3 2 1 34 34 H 1.09000 * 109.47599 * 304.99576 * 4 3 2 35 35 H 1.09002 * 109.46822 * 64.99625 * 4 3 2 36 36 H 1.08000 * 126.07152 * 180.14847 * 7 6 5 37 37 H 1.07992 * 127.32532 * 179.70675 * 8 7 6 38 38 H 1.09003 * 109.88281 * 300.43258 * 13 12 10 39 39 H 1.08991 * 109.88588 * 61.60980 * 13 12 10 40 40 H 0.96993 * 120.00280 * 271.22631 * 16 14 13 41 41 H 0.97006 * 119.99477 * 180.02562 * 20 19 17 42 42 H 1.09008 * 109.47249 * 60.00046 * 27 25 14 43 43 H 1.09002 * 109.47185 * 180.02562 * 27 25 14 44 44 H 1.08999 * 109.47623 * 300.00126 * 27 25 14 45 45 H 1.09005 * 110.36392 * 274.73982 * 28 12 10 46 46 H 1.08997 * 110.36798 * 37.06335 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1869 0.1257 5 7 4.1163 2.5243 0.2457 6 7 4.5915 3.2142 -0.7280 7 6 5.0402 4.3692 -0.3071 8 6 4.8440 4.4274 1.0746 9 6 4.2460 3.2253 1.4108 10 6 3.8321 2.7899 2.7542 11 8 3.3921 1.6684 2.9214 12 7 3.9403 3.6341 3.7994 13 6 4.3714 5.0378 3.7259 14 6 4.3667 5.5944 5.1652 15 1 3.4350 6.1209 5.3720 16 7 5.5192 6.4714 5.3856 17 6 5.4111 7.8162 5.1504 18 1 4.4561 8.2421 4.8806 19 6 6.5292 8.6317 5.2588 20 7 6.4074 9.9359 5.1291 21 14 8.2064 7.8785 5.5889 22 1 8.9180 7.6717 4.3020 23 1 8.9983 8.7920 6.4512 24 1 8.0362 6.5729 6.2757 25 6 4.4777 4.3134 6.0337 26 1 5.5145 3.9881 6.1193 27 6 3.8588 4.5324 7.4156 28 6 3.6401 3.3046 5.2046 29 1 -0.3634 0.5894 0.8418 30 1 -0.3632 0.4343 -0.9314 31 1 -0.3633 -1.0238 0.0894 32 1 1.7613 1.8140 -0.9313 33 1 1.6196 1.8771 0.8419 34 1 3.7773 0.6013 1.0113 35 1 3.9308 0.6929 -0.7597 36 1 5.4875 5.1388 -0.9187 37 1 5.1042 5.2377 1.7394 38 1 5.3772 5.0954 3.3096 39 1 3.6782 5.6065 3.1062 40 1 6.3588 6.0997 5.6982 41 1 7.1888 10.5058 5.2045 42 1 2.8053 4.7896 7.3053 43 1 3.9506 3.6192 8.0037 44 1 4.3799 5.3445 7.9226 45 1 2.5768 3.4351 5.4059 46 1 3.9469 2.2830 5.4286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054767316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:23 Heat of formation + Delta-G solvation = 30.924853 kcal Electronic energy + Delta-G solvation = -27944.356195 eV Core-core repulsion = 24065.188265 eV Total energy + Delta-G solvation = -3879.167929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59919 -39.81298 -38.25812 -37.68688 -34.47926 -33.91299 -32.80918 -31.26358 -30.63424 -29.46414 -28.10462 -26.62623 -26.44127 -24.30096 -23.64149 -22.64523 -21.57104 -20.99711 -20.25241 -19.41045 -17.65788 -17.35744 -16.85205 -16.42664 -16.32270 -16.18370 -15.73716 -15.22683 -14.87817 -14.57198 -14.27856 -14.17279 -13.84251 -13.64653 -13.39537 -13.18667 -12.93223 -12.65600 -12.58281 -12.35247 -12.26725 -11.79188 -11.71571 -11.59790 -11.51168 -11.21970 -10.97899 -10.74076 -10.61115 -10.42134 -10.11434 -10.04556 -9.98509 -9.71613 -9.27792 -9.09113 -9.04159 -8.54083 -7.46154 -5.90729 -3.29096 1.22227 2.10982 2.59896 2.99068 3.20942 3.27420 3.32037 3.38637 3.68382 4.34752 4.40087 4.46720 4.63246 4.80174 4.85052 4.94416 4.96515 4.98690 5.05293 5.06913 5.16918 5.35425 5.35523 5.38890 5.44422 5.46851 5.58363 5.59912 5.65462 5.69640 5.76210 5.84124 5.98960 6.05247 6.19406 6.27296 6.31727 6.42162 6.50547 6.61302 6.65739 6.77133 7.49304 7.84581 7.95373 8.11819 8.27957 9.05027 9.76834 9.95103 11.26608 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.003453 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.133207 B = 8105.947267 C = 9250.081708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.057 3.943 4 C 0.123 3.877 5 N -0.261 5.261 6 N -0.279 5.279 7 C -0.001 4.001 8 C -0.187 4.187 9 C -0.035 4.035 10 C 0.600 3.400 11 O -0.551 6.551 12 N -0.597 5.597 13 C 0.063 3.937 14 C 0.181 3.819 15 H 0.079 0.921 16 N -0.735 5.735 17 C -0.255 4.255 18 H 0.092 0.908 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.118 4.118 26 H 0.083 0.917 27 C -0.134 4.134 28 C 0.118 3.882 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.189 0.811 37 H 0.179 0.821 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.367 0.633 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 -16.240 -6.409 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.021 4.021 4 C 0.002 3.998 5 N -0.050 5.050 6 N -0.111 5.111 7 C -0.177 4.177 8 C -0.215 4.215 9 C -0.162 4.162 10 C 0.388 3.612 11 O -0.430 6.430 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.069 3.931 15 H 0.097 0.903 16 N -0.377 5.377 17 C -0.384 4.384 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.573 5.573 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.138 4.138 26 H 0.101 0.899 27 C -0.192 4.192 28 C -0.004 4.004 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.206 0.794 37 H 0.196 0.804 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.201 0.799 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.661 -17.568 -7.394 20.936 hybrid contribution 1.241 0.494 0.757 1.536 sum -7.419 -17.074 -6.637 19.764 Atomic orbital electron populations 1.22772 0.80167 1.03025 1.00245 1.87783 1.20356 1.26600 1.95521 1.22630 0.92710 0.85632 1.01166 1.21747 0.92465 0.78763 1.06783 1.45434 1.42135 1.14502 1.02967 1.73198 1.14819 1.06441 1.16659 1.23685 1.04225 0.95346 0.94489 1.23114 1.03511 0.98004 0.96920 1.21335 1.10478 0.95276 0.89108 1.16530 0.78488 0.84033 0.82145 1.90781 1.47506 1.19774 1.84969 1.48135 1.65011 1.12930 1.06835 1.23717 1.00366 0.79226 1.02918 1.21261 0.93071 0.89383 0.89353 0.90335 1.42816 1.09934 1.05103 1.79866 1.19056 0.96823 0.81423 1.41136 0.88991 1.24699 0.97483 0.95150 1.01136 1.69709 1.29446 1.02382 1.55714 0.86557 0.85759 0.78171 0.78000 1.20984 1.21681 1.20403 1.22749 0.99737 0.95897 0.95423 0.89908 1.21619 1.00807 1.01690 0.95101 1.22364 0.99559 0.99507 0.79015 0.93692 0.93969 0.89230 0.92614 0.92305 0.85992 0.87564 0.79418 0.80373 0.90023 0.91042 0.79913 0.92856 0.92493 0.93037 0.91273 0.91043 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.45 10.70 -35.23 -0.38 -4.82 16 3 C 0.06 0.66 6.27 37.16 0.23 0.89 16 4 C 0.12 1.51 6.07 -4.04 -0.02 1.49 16 5 N -0.26 -3.70 3.35 -57.14 -0.19 -3.89 16 6 N -0.28 -3.97 11.90 30.59 0.36 -3.61 16 7 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 8 C -0.19 -2.65 9.50 -38.98 -0.37 -3.02 16 9 C -0.03 -0.52 6.91 -82.06 -0.57 -1.09 16 10 C 0.60 9.44 7.83 -12.64 -0.10 9.34 16 11 O -0.55 -9.43 15.07 5.25 0.08 -9.35 16 12 N -0.60 -8.78 3.32 -171.75 -0.57 -9.35 16 13 C 0.06 0.96 4.81 -3.07 -0.01 0.95 16 14 C 0.18 2.98 3.08 -66.09 -0.20 2.78 16 15 H 0.08 1.33 7.99 -51.93 -0.42 0.91 16 16 N -0.74 -15.18 4.93 -51.65 -0.25 -15.43 16 17 C -0.25 -6.44 10.44 -15.05 -0.16 -6.60 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 20 N -0.93 -27.29 13.97 55.49 0.78 -26.51 16 21 Si 0.88 20.61 28.02 -169.99 -4.76 15.85 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -5.99 6.13 56.52 0.35 -5.64 16 25 C -0.12 -1.61 3.28 -88.35 -0.29 -1.90 16 26 H 0.08 1.17 8.01 -51.93 -0.42 0.76 16 27 C -0.13 -1.63 9.31 37.15 0.35 -1.29 16 28 C 0.12 1.55 6.36 -2.41 -0.02 1.53 16 29 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.12 1.62 6.51 -51.93 -0.34 1.28 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.19 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.18 2.49 4.66 -52.49 -0.24 2.24 16 38 H 0.08 1.31 6.11 -51.93 -0.32 1.00 16 39 H 0.07 1.08 7.62 -51.93 -0.40 0.68 16 40 H 0.37 7.59 5.48 -40.82 -0.22 7.37 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.06 0.64 8.07 -51.92 -0.42 0.22 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 46 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -30.86 374.05 -6.68 -37.54 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.02 Total: 9.44 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.36 Total: 4.50 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.12 Total: -58.79 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.30 Total: -14.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.76 Total: 15.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.86 -6.68 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.465 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds