Wall clock time and date at job start Tue Mar 31 2020 14:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00033 * 2 1 4 4 C 1.53008 * 109.46870 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46935 * 175.01319 * 4 3 2 6 6 N 1.28449 * 125.19262 * 274.90846 * 5 4 3 7 7 C 1.30859 * 110.92666 * 180.27868 * 6 5 4 8 8 C 1.39671 * 107.86496 * 359.71468 * 7 6 5 9 9 C 1.36597 * 125.19072 * 94.69083 * 5 4 3 10 10 C 1.47159 * 126.88629 * 0.02562 * 9 5 4 11 11 O 1.21635 * 120.00031 * 5.35352 * 10 9 5 12 12 N 1.34773 * 120.00289 * 185.35971 * 10 9 5 13 13 C 1.47433 * 125.64873 * 175.32308 * 12 10 9 14 14 C 1.54909 * 104.83098 * 204.07969 * 13 12 10 15 15 H 1.08995 * 111.00310 * 81.06293 * 14 13 12 16 16 C 1.53000 * 111.03532 * 204.90089 * 14 13 12 17 17 C 1.55160 * 101.58261 * 322.99037 * 14 13 12 18 18 H 1.08998 * 110.71794 * 276.95884 * 17 14 13 19 19 N 1.46501 * 110.71829 * 153.86772 * 17 14 13 20 20 C 1.36931 * 119.99829 * 155.00362 * 19 17 14 21 21 H 1.08004 * 120.00502 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00005 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47007 * 59.99836 * 24 22 20 26 26 H 1.48500 * 109.46699 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47081 * 299.99836 * 24 22 20 28 28 C 1.47019 * 125.64966 * 355.26401 * 12 10 9 29 29 H 1.09001 * 109.46837 * 299.99360 * 1 2 3 30 30 H 1.08993 * 109.47205 * 59.99449 * 1 2 3 31 31 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47129 * 60.00757 * 3 2 1 33 33 H 1.09004 * 109.47205 * 300.00242 * 3 2 1 34 34 H 1.08994 * 109.47079 * 55.01483 * 4 3 2 35 35 H 1.08997 * 109.47043 * 295.00956 * 4 3 2 36 36 H 1.07999 * 126.06852 * 179.74538 * 7 6 5 37 37 H 1.07995 * 127.32247 * 180.02562 * 8 7 6 38 38 H 1.09001 * 110.36499 * 85.24561 * 13 12 10 39 39 H 1.08993 * 110.36719 * 322.91905 * 13 12 10 40 40 H 1.09005 * 109.47002 * 175.39295 * 16 14 13 41 41 H 1.08992 * 109.47271 * 295.39589 * 16 14 13 42 42 H 1.08999 * 109.46934 * 55.40086 * 16 14 13 43 43 H 0.97001 * 119.99749 * 334.99260 * 19 17 14 44 44 H 0.97001 * 119.99737 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.88052 * 59.57122 * 28 12 10 46 46 H 1.08994 * 110.01411 * 298.48320 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1309 2.5177 -0.1207 6 7 4.3422 3.1373 -1.2259 7 6 4.8906 4.3055 -1.0093 8 6 5.0431 4.4580 0.3707 9 6 4.5424 3.2932 0.9258 10 6 4.4736 2.9551 2.3563 11 8 4.1028 1.8497 2.7029 12 7 4.8213 3.8703 3.2826 13 6 4.7083 3.7008 4.7428 14 6 4.6220 5.1421 5.3038 15 1 3.6089 5.5348 5.2177 16 6 5.1069 5.1969 6.7539 17 6 5.5945 5.9014 4.3630 18 1 6.6250 5.7856 4.6988 19 7 5.2346 7.3191 4.2804 20 6 6.1861 8.2493 3.9573 21 1 7.2020 7.9380 3.7638 22 6 5.8450 9.5926 3.8785 23 7 4.6068 9.9720 4.1137 24 14 7.1432 10.8616 3.4384 25 1 7.7016 10.5539 2.0973 26 1 6.5279 12.2131 3.4198 27 1 8.2318 10.8266 4.4479 28 6 5.3771 5.2026 3.0043 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5686 -0.8428 35 1 3.8637 0.7226 0.9304 36 1 5.1743 5.0244 -1.7636 37 1 5.4622 5.3050 0.8935 38 1 5.5896 3.1932 5.1350 39 1 3.8059 3.1423 4.9911 40 1 5.1129 6.2318 7.0961 41 1 4.4380 4.6100 7.3832 42 1 6.1155 4.7882 6.8154 43 1 4.3222 7.5987 4.4543 44 1 4.3686 10.9107 4.0590 45 1 4.6760 5.7779 2.3996 46 1 6.3278 5.1081 2.4798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054767317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:26 Heat of formation + Delta-G solvation = 25.113029 kcal Electronic energy + Delta-G solvation = -27791.574459 eV Core-core repulsion = 23912.154510 eV Total energy + Delta-G solvation = -3879.419949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55906 -39.73084 -38.23730 -37.59980 -34.37393 -33.85081 -32.74687 -31.02258 -30.48671 -29.44402 -27.72095 -26.58981 -26.38019 -24.31944 -23.65935 -22.79508 -21.48740 -21.05350 -20.01668 -19.38375 -17.31129 -17.18717 -16.88455 -16.35092 -16.28899 -15.95740 -15.83087 -15.16194 -14.89756 -14.52855 -14.21249 -14.06827 -13.75831 -13.61519 -13.36019 -13.14872 -12.82437 -12.64088 -12.49592 -12.30189 -12.08370 -11.76154 -11.61597 -11.56901 -11.19240 -11.09292 -10.90362 -10.68010 -10.56332 -10.33809 -10.10889 -10.04052 -9.92408 -9.76911 -9.24603 -9.04633 -9.00876 -8.47386 -7.15864 -5.90183 -3.21566 1.26658 2.14578 2.63779 3.05785 3.25678 3.36793 3.42181 3.42873 3.69611 4.39446 4.44914 4.51031 4.66200 4.88165 4.91317 5.01945 5.04608 5.07428 5.08323 5.14907 5.20112 5.36118 5.42578 5.49889 5.51725 5.57752 5.66048 5.68207 5.75272 5.81649 5.87459 5.92613 6.12550 6.17570 6.27853 6.39905 6.41458 6.53952 6.55698 6.64108 6.78254 6.78775 7.55565 7.59562 7.99651 8.16341 8.26857 9.39083 9.91774 10.26666 11.31393 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.003269 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.183351 B = 8563.346491 C = 9629.772193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.055 3.945 4 C 0.118 3.882 5 N -0.261 5.261 6 N -0.281 5.281 7 C -0.002 4.002 8 C -0.186 4.186 9 C -0.033 4.033 10 C 0.600 3.400 11 O -0.554 6.554 12 N -0.594 5.594 13 C 0.117 3.883 14 C -0.115 4.115 15 H 0.084 0.916 16 C -0.133 4.133 17 C 0.177 3.823 18 H 0.071 0.929 19 N -0.709 5.709 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.928 5.928 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.062 3.938 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.188 0.812 37 H 0.178 0.822 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.387 0.613 44 H 0.258 0.742 45 H 0.082 0.918 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 -15.539 -4.764 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.023 4.023 4 C -0.002 4.002 5 N -0.050 5.050 6 N -0.112 5.112 7 C -0.178 4.178 8 C -0.215 4.215 9 C -0.160 4.160 10 C 0.388 3.612 11 O -0.434 6.434 12 N -0.326 5.326 13 C -0.005 4.005 14 C -0.136 4.136 15 H 0.102 0.898 16 C -0.190 4.190 17 C 0.064 3.936 18 H 0.089 0.911 19 N -0.349 5.349 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.738 3.262 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.063 4.063 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.205 0.795 37 H 0.195 0.805 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.222 0.778 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.975 -17.041 -5.493 18.340 hybrid contribution 0.411 1.774 0.184 1.830 sum -3.564 -15.267 -5.309 16.552 Atomic orbital electron populations 1.22776 0.80163 1.03007 1.00328 1.87782 1.20369 1.26703 1.95552 1.22662 0.92721 0.85519 1.01433 1.21860 0.92361 0.78877 1.07145 1.45428 1.43106 1.14440 1.02033 1.73179 1.18607 1.08961 1.10497 1.23662 1.02978 0.94791 0.96374 1.23064 1.04993 0.98609 0.94792 1.21331 1.09729 0.94519 0.90402 1.16524 0.77904 0.83687 0.83059 1.90744 1.49855 1.21151 1.81674 1.48131 1.61545 1.16408 1.06531 1.22331 1.01911 0.97792 0.78471 1.22684 1.01249 0.93598 0.96021 0.89756 1.21598 1.00370 1.02777 0.94295 1.21283 0.97004 0.85465 0.89863 0.91092 1.42353 1.10847 0.99113 1.82582 1.19194 0.91190 0.87347 1.40483 0.90945 1.24763 0.96395 0.97177 1.01931 1.69647 1.16766 1.16078 1.55034 0.86277 0.80660 0.80899 0.78375 1.21057 1.21685 1.21155 1.23778 0.98214 0.81419 1.02913 0.93729 0.93893 0.89195 0.92351 0.92458 0.87745 0.85277 0.79495 0.80468 0.91193 0.90731 0.91248 0.93171 0.92760 0.77834 0.93243 0.89942 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.52 10.70 -35.23 -0.38 -4.90 16 3 C 0.05 0.66 6.26 37.16 0.23 0.89 16 4 C 0.12 1.50 6.35 -4.04 -0.03 1.47 16 5 N -0.26 -3.80 3.35 -57.14 -0.19 -3.99 16 6 N -0.28 -4.07 11.90 30.59 0.36 -3.71 16 7 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 8 C -0.19 -2.69 9.43 -38.98 -0.37 -3.05 16 9 C -0.03 -0.50 6.92 -82.06 -0.57 -1.07 16 10 C 0.60 9.79 7.82 -12.64 -0.10 9.69 16 11 O -0.55 -9.80 14.87 5.25 0.08 -9.72 16 12 N -0.59 -9.14 3.33 -171.88 -0.57 -9.72 16 13 C 0.12 1.63 6.36 -2.52 -0.02 1.62 16 14 C -0.12 -1.69 3.27 -88.47 -0.29 -1.98 16 15 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 16 C -0.13 -1.74 9.29 37.16 0.35 -1.40 16 17 C 0.18 3.04 3.09 -66.09 -0.20 2.84 16 18 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 19 N -0.71 -15.67 5.15 -51.65 -0.27 -15.94 16 20 C -0.25 -6.27 9.96 -15.06 -0.15 -6.42 16 21 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 24 Si 0.91 20.96 29.55 -169.99 -5.02 15.93 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.06 0.99 4.76 -3.07 -0.01 0.98 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.13 1.77 5.96 -51.93 -0.31 1.46 16 36 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.18 2.50 4.66 -52.49 -0.24 2.26 16 38 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 39 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 43 H 0.39 9.28 7.76 -40.82 -0.32 8.96 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.08 1.43 6.66 -51.93 -0.35 1.08 16 46 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -29.86 377.02 -6.96 -36.81 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -7.03 Total: 10.50 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.35 Total: 4.48 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.06 Total: -58.79 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.30 Total: -14.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.86 -6.96 -36.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.926 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds