Wall clock time and date at job start Tue Mar 31 2020 14:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00033 * 2 1 4 4 C 1.53008 * 109.46870 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46935 * 175.01319 * 4 3 2 6 6 N 1.28449 * 125.19262 * 274.90846 * 5 4 3 7 7 C 1.30859 * 110.92666 * 180.27868 * 6 5 4 8 8 C 1.39671 * 107.86496 * 359.71468 * 7 6 5 9 9 C 1.36597 * 125.19072 * 94.69083 * 5 4 3 10 10 C 1.47159 * 126.88629 * 0.02562 * 9 5 4 11 11 O 1.21635 * 120.00031 * 5.35352 * 10 9 5 12 12 N 1.34773 * 120.00289 * 185.35971 * 10 9 5 13 13 C 1.47433 * 125.64873 * 175.32308 * 12 10 9 14 14 C 1.54909 * 104.83098 * 204.07969 * 13 12 10 15 15 H 1.08995 * 111.00310 * 81.06293 * 14 13 12 16 16 C 1.53000 * 111.03532 * 204.90089 * 14 13 12 17 17 C 1.55160 * 101.58261 * 322.99037 * 14 13 12 18 18 H 1.08998 * 110.71794 * 276.95884 * 17 14 13 19 19 N 1.46501 * 110.71829 * 153.86772 * 17 14 13 20 20 C 1.36931 * 119.99829 * 155.00362 * 19 17 14 21 21 H 1.08004 * 120.00502 * 359.97438 * 20 19 17 22 22 C 1.38817 * 120.00005 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99911 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47007 * 59.99836 * 24 22 20 26 26 H 1.48500 * 109.46699 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47081 * 299.99836 * 24 22 20 28 28 C 1.47019 * 125.64966 * 355.26401 * 12 10 9 29 29 H 1.09001 * 109.46837 * 299.99360 * 1 2 3 30 30 H 1.08993 * 109.47205 * 59.99449 * 1 2 3 31 31 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47129 * 60.00757 * 3 2 1 33 33 H 1.09004 * 109.47205 * 300.00242 * 3 2 1 34 34 H 1.08994 * 109.47079 * 55.01483 * 4 3 2 35 35 H 1.08997 * 109.47043 * 295.00956 * 4 3 2 36 36 H 1.07999 * 126.06852 * 179.74538 * 7 6 5 37 37 H 1.07995 * 127.32247 * 180.02562 * 8 7 6 38 38 H 1.09001 * 110.36499 * 85.24561 * 13 12 10 39 39 H 1.08993 * 110.36719 * 322.91905 * 13 12 10 40 40 H 1.09005 * 109.47002 * 175.39295 * 16 14 13 41 41 H 1.08992 * 109.47271 * 295.39589 * 16 14 13 42 42 H 1.08999 * 109.46934 * 55.40086 * 16 14 13 43 43 H 0.97001 * 119.99749 * 334.99260 * 19 17 14 44 44 H 0.97001 * 119.99737 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.88052 * 59.57122 * 28 12 10 46 46 H 1.08994 * 110.01411 * 298.48320 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1309 2.5177 -0.1207 6 7 4.3422 3.1373 -1.2259 7 6 4.8906 4.3055 -1.0093 8 6 5.0431 4.4580 0.3707 9 6 4.5424 3.2932 0.9258 10 6 4.4736 2.9551 2.3563 11 8 4.1028 1.8497 2.7029 12 7 4.8213 3.8703 3.2826 13 6 4.7083 3.7008 4.7428 14 6 4.6220 5.1421 5.3038 15 1 3.6089 5.5348 5.2177 16 6 5.1069 5.1969 6.7539 17 6 5.5945 5.9014 4.3630 18 1 6.6250 5.7856 4.6988 19 7 5.2346 7.3191 4.2804 20 6 6.1861 8.2493 3.9573 21 1 7.2020 7.9380 3.7638 22 6 5.8450 9.5926 3.8785 23 7 4.6068 9.9720 4.1137 24 14 7.1432 10.8616 3.4384 25 1 7.7016 10.5539 2.0973 26 1 6.5279 12.2131 3.4198 27 1 8.2318 10.8266 4.4479 28 6 5.3771 5.2026 3.0043 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5686 -0.8428 35 1 3.8637 0.7226 0.9304 36 1 5.1743 5.0244 -1.7636 37 1 5.4622 5.3050 0.8935 38 1 5.5896 3.1932 5.1350 39 1 3.8059 3.1423 4.9911 40 1 5.1129 6.2318 7.0961 41 1 4.4380 4.6100 7.3832 42 1 6.1155 4.7882 6.8154 43 1 4.3222 7.5987 4.4543 44 1 4.3686 10.9107 4.0590 45 1 4.6760 5.7779 2.3996 46 1 6.3278 5.1081 2.4798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054767317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:25 Heat of formation + Delta-G solvation = 5.600423 kcal Electronic energy + Delta-G solvation = -27792.420589 eV Core-core repulsion = 23912.154510 eV Total energy + Delta-G solvation = -3880.266079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.66907 -41.00938 -39.14004 -38.90379 -35.92842 -35.03828 -34.06518 -32.63692 -31.73315 -30.42366 -29.22824 -27.60267 -27.28676 -25.97700 -24.75357 -24.08783 -22.63624 -22.34609 -21.34144 -20.51844 -19.06534 -18.42346 -17.96263 -17.52096 -17.20702 -17.17198 -16.94420 -16.43171 -16.22954 -15.74488 -15.37029 -15.35664 -15.20621 -14.86646 -14.64293 -14.44073 -14.01910 -13.90898 -13.73255 -13.31929 -13.16877 -12.94540 -12.83341 -12.77707 -12.67523 -12.39878 -12.23888 -12.18053 -12.00368 -11.81802 -11.65253 -11.44344 -11.20674 -10.87149 -10.85082 -10.37747 -10.13074 -9.73076 -9.01617 -7.89664 -5.19092 0.08656 1.07727 1.54757 1.55228 1.55631 1.61447 1.88690 2.03257 2.60795 2.80113 3.20912 3.41459 3.42365 3.69527 3.73185 3.83625 3.87755 3.89531 4.06319 4.10750 4.24847 4.34127 4.37712 4.40944 4.43723 4.49737 4.54436 4.61358 4.63408 4.69824 4.75962 4.78875 4.89235 4.91788 5.09791 5.15193 5.19244 5.35970 5.44119 5.51165 5.60559 5.61060 5.93374 6.27900 6.31954 6.81849 6.98089 7.39009 8.10082 8.33891 9.32875 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.003269 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.183351 B = 8563.346491 C = 9629.772193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.065 3.935 4 C 0.118 3.882 5 N -0.263 5.263 6 N -0.289 5.289 7 C 0.001 3.999 8 C -0.188 4.188 9 C -0.051 4.051 10 C 0.599 3.401 11 O -0.571 6.571 12 N -0.594 5.594 13 C 0.120 3.880 14 C -0.106 4.106 15 H 0.072 0.928 16 C -0.127 4.127 17 C 0.171 3.829 18 H 0.076 0.924 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.083 0.917 22 C -0.068 4.068 23 N -0.967 5.967 24 Si 0.965 3.035 25 H -0.276 1.276 26 H -0.303 1.303 27 H -0.280 1.280 28 C 0.076 3.924 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.218 0.782 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -16.715 -5.265 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.014 4.014 4 C -0.003 4.003 5 N -0.052 5.052 6 N -0.121 5.121 7 C -0.175 4.175 8 C -0.217 4.217 9 C -0.178 4.178 10 C 0.387 3.613 11 O -0.452 6.452 12 N -0.325 5.325 13 C -0.002 4.002 14 C -0.126 4.126 15 H 0.090 0.910 16 C -0.185 4.185 17 C 0.061 3.939 18 H 0.094 0.906 19 N -0.358 5.358 20 C -0.370 4.370 21 H 0.100 0.900 22 C -0.260 4.260 23 N -0.617 5.617 24 Si 0.795 3.205 25 H -0.202 1.202 26 H -0.230 1.230 27 H -0.206 1.206 28 C -0.049 4.049 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.235 0.765 37 H 0.196 0.804 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.208 0.792 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.150 -18.275 -5.993 19.488 hybrid contribution 0.137 2.022 0.342 2.055 sum -3.013 -16.253 -5.651 17.469 Atomic orbital electron populations 1.23013 0.78499 1.04581 1.00906 1.87762 1.22211 1.26336 1.95612 1.22492 0.92298 0.85747 1.00813 1.21916 0.92779 0.78379 1.07184 1.45581 1.43053 1.14805 1.01797 1.73185 1.18907 1.09467 1.10518 1.24183 1.01947 0.94815 0.96588 1.23148 1.04849 0.98272 0.95441 1.21372 1.10830 0.95336 0.90293 1.16647 0.77606 0.83498 0.83514 1.90733 1.50672 1.21769 1.82034 1.48130 1.61309 1.15931 1.07144 1.22409 1.03028 0.97177 0.77542 1.22580 0.99854 0.93518 0.96602 0.91004 1.21556 1.01732 1.01920 0.93276 1.21465 0.97890 0.83386 0.91206 0.90589 1.42460 1.09815 1.00836 1.82662 1.19585 0.91927 0.87775 1.37711 0.89962 1.25457 0.97948 0.99148 1.03494 1.69797 1.18583 1.15638 1.57684 0.85338 0.78545 0.78187 0.78431 1.20198 1.22960 1.20594 1.23442 0.98352 0.81458 1.01644 0.93649 0.92815 0.87195 0.93830 0.92108 0.86203 0.86440 0.76527 0.80392 0.89395 0.90244 0.93396 0.90943 0.91403 0.79236 0.94168 0.91392 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.03 10.70 -148.98 -1.59 -10.62 16 3 C 0.06 1.52 6.26 71.98 0.45 1.97 16 4 C 0.12 2.91 6.35 86.38 0.55 3.46 16 5 N -0.26 -7.43 3.35 -334.69 -1.12 -8.55 16 6 N -0.29 -7.97 11.90 -57.14 -0.68 -8.65 16 7 C 0.00 0.02 12.03 85.18 1.02 1.04 16 8 C -0.19 -5.22 9.43 22.66 0.21 -5.01 16 9 C -0.05 -1.54 6.92 40.79 0.28 -1.25 16 10 C 0.60 19.07 7.82 86.59 0.68 19.75 16 11 O -0.57 -19.83 14.87 -4.14 -0.06 -19.89 16 12 N -0.59 -17.57 3.33 -815.96 -2.71 -20.28 16 13 C 0.12 3.12 6.36 86.85 0.55 3.67 16 14 C -0.11 -2.96 3.27 -9.40 -0.03 -2.99 16 15 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 16 C -0.13 -3.11 9.29 71.98 0.67 -2.44 16 17 C 0.17 5.72 3.09 46.18 0.14 5.86 16 18 H 0.08 2.50 7.99 -2.39 -0.02 2.48 16 19 N -0.72 -31.69 5.15 -317.32 -1.63 -33.32 16 20 C -0.24 -11.76 9.96 84.04 0.84 -10.93 16 21 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.97 -55.52 13.06 21.65 0.28 -55.24 16 24 Si 0.97 43.07 29.55 68.60 2.03 45.10 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 C 0.08 2.36 4.76 86.73 0.41 2.77 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.12 3.21 5.96 -2.39 -0.01 3.19 16 36 H 0.22 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.18 4.84 4.66 -2.91 -0.01 4.83 16 38 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 39 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 40 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 43 H 0.38 18.29 7.76 -92.71 -0.72 17.57 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.07 2.33 6.66 -2.39 -0.02 2.31 16 46 H 0.08 2.24 7.13 -2.39 -0.02 2.23 16 Total: -1.00 -63.38 377.02 2.27 -61.10 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.27 Total: 35.91 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 7.50 Total: 14.43 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.87 Total: -126.03 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.66 Total: -30.51 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.38 2.27 -61.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054767317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.703 kcal (2) G-P(sol) polarization free energy of solvation -63.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds