Wall clock time and date at job start Tue Mar 31 2020 14:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99999 * 2 1 4 4 C 1.50694 * 109.46983 * 179.97438 * 3 2 1 5 5 N 1.30458 * 125.99241 * 270.14178 * 4 3 2 6 6 N 1.39929 * 108.89891 * 180.26409 * 5 4 3 7 7 C 1.46494 * 125.75410 * 179.73561 * 6 5 4 8 8 C 1.34262 * 108.48980 * 359.75557 * 6 5 4 9 9 C 1.38041 * 107.42180 * 359.97438 * 8 6 5 10 10 C 1.47425 * 126.41692 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00114 * 214.12464 * 10 9 8 12 12 N 1.34779 * 120.00226 * 34.12139 * 10 9 8 13 13 C 1.47019 * 125.64925 * 175.63351 * 12 10 9 14 14 C 1.54326 * 107.26893 * 181.02313 * 13 12 10 15 15 H 1.09003 * 110.72288 * 263.82876 * 14 13 12 16 16 C 1.53001 * 110.87006 * 140.63048 * 14 13 12 17 17 C 1.55151 * 102.94162 * 22.19388 * 14 13 12 18 18 H 1.09004 * 111.00371 * 206.38405 * 17 14 13 19 19 N 1.46505 * 111.00622 * 82.57215 * 17 14 13 20 20 C 1.36933 * 120.00265 * 154.99549 * 19 17 14 21 21 H 1.08002 * 119.99687 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00159 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47157 * 89.99455 * 24 22 20 26 26 H 1.48491 * 109.47153 * 209.99824 * 24 22 20 27 27 H 1.48501 * 109.46749 * 329.99556 * 24 22 20 28 28 C 1.47422 * 125.64526 * 355.58981 * 12 10 9 29 29 H 1.09008 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46974 * 299.99417 * 1 2 3 31 31 H 1.08993 * 109.47256 * 60.00266 * 1 2 3 32 32 H 1.09000 * 109.46720 * 60.00414 * 3 2 1 33 33 H 1.08992 * 109.47188 * 300.00394 * 3 2 1 34 34 H 1.09000 * 109.47303 * 270.02558 * 7 6 5 35 35 H 1.08997 * 109.47165 * 30.02417 * 7 6 5 36 36 H 1.09008 * 109.47039 * 150.02751 * 7 6 5 37 37 H 1.08009 * 126.28877 * 180.02562 * 8 6 5 38 38 H 1.08997 * 109.88342 * 61.60789 * 13 12 10 39 39 H 1.08991 * 109.88152 * 300.44236 * 13 12 10 40 40 H 1.09002 * 109.46759 * 303.94814 * 16 14 13 41 41 H 1.08995 * 109.47615 * 63.94508 * 16 14 13 42 42 H 1.08994 * 109.47152 * 183.95149 * 16 14 13 43 43 H 0.96997 * 119.99766 * 334.99776 * 19 17 14 44 44 H 0.97008 * 119.99999 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.36936 * 37.07375 * 28 12 10 46 46 H 1.08997 * 110.37208 * 274.74974 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2761 1.1235 1.0565 6 7 5.6101 1.0248 0.6458 7 6 6.7741 0.9380 1.5310 8 6 5.6434 1.0237 -0.6964 9 6 4.3406 1.1202 -1.1423 10 6 3.8968 1.1548 -2.5477 11 8 2.9283 1.8189 -2.8634 12 7 4.5645 0.4504 -3.4828 13 6 4.1802 0.3228 -4.8962 14 6 5.2208 -0.5942 -5.5729 15 1 5.9938 -0.0034 -6.0644 16 6 4.5478 -1.5388 -6.5708 17 6 5.8129 -1.3883 -4.3788 18 1 6.8291 -1.7184 -4.5946 19 7 4.9578 -2.5252 -4.0284 20 6 5.4934 -3.6157 -3.3967 21 1 6.5461 -3.6375 -3.1564 22 6 4.6833 -4.6930 -3.0652 23 7 3.4003 -4.6661 -3.3577 24 14 5.4138 -6.1804 -2.2029 25 1 5.3356 -5.9880 -0.7324 26 1 4.6524 -7.3970 -2.5841 27 1 6.8341 -6.3386 -2.6066 28 6 5.8018 -0.3190 -3.2580 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 7.1385 1.9413 1.7516 35 1 6.4885 0.4430 2.4592 36 1 7.5614 0.3651 1.0409 37 1 6.5272 0.9583 -1.3139 38 1 4.1854 1.3035 -5.3718 39 1 3.1885 -0.1229 -4.9718 40 1 3.7710 -2.1104 -6.0628 41 1 4.1019 -0.9574 -7.3777 42 1 5.2908 -2.2217 -6.9826 43 1 4.0123 -2.5054 -4.2439 44 1 2.8341 -5.4189 -3.1257 45 1 5.7790 -0.7964 -2.2784 46 1 6.6732 0.3301 -3.3443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054819954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:55 Heat of formation + Delta-G solvation = 23.626316 kcal Electronic energy + Delta-G solvation = -28634.855129 eV Core-core repulsion = 24755.370711 eV Total energy + Delta-G solvation = -3879.484418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34745 -39.34818 -37.61429 -37.22533 -33.82712 -33.55353 -32.45087 -30.61840 -30.14686 -28.86577 -27.76174 -26.65176 -25.91945 -24.78393 -23.86582 -22.63378 -21.22121 -20.31135 -19.18170 -18.99490 -17.48957 -16.76888 -16.34891 -16.11107 -15.79557 -15.56002 -15.31489 -15.05759 -14.76881 -14.48577 -14.07044 -13.71729 -13.57320 -13.03207 -12.94918 -12.88074 -12.71492 -12.38987 -12.15939 -12.09267 -11.96820 -11.86794 -11.47697 -11.20797 -11.09294 -10.90688 -10.82949 -10.66699 -10.42645 -10.25561 -9.93991 -9.67689 -9.61479 -9.39440 -9.32415 -8.99681 -8.53032 -8.10637 -6.98824 -5.78906 -3.08569 1.69046 2.20302 2.36929 3.33772 3.41310 3.45492 3.48444 3.73674 4.13181 4.48462 4.55288 4.70457 4.90135 4.97978 4.98299 5.18544 5.22315 5.25475 5.35552 5.38584 5.47803 5.54294 5.57662 5.61887 5.65825 5.67933 5.79710 5.88090 5.94073 5.97386 6.03055 6.20271 6.26210 6.37009 6.41914 6.46651 6.55296 6.68622 6.80649 6.89596 6.98563 7.32259 7.63711 7.65564 8.03148 8.38365 8.66169 9.50280 10.06225 10.40612 11.42985 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.005044 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.196588 B = 5550.240638 C = 6159.766251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.138 3.862 4 C 0.127 3.873 5 N -0.283 5.283 6 N -0.361 5.361 7 C 0.099 3.901 8 C 0.096 3.904 9 C -0.256 4.256 10 C 0.611 3.389 11 O -0.556 6.556 12 N -0.598 5.598 13 C 0.119 3.881 14 C -0.115 4.115 15 H 0.078 0.922 16 C -0.131 4.131 17 C 0.172 3.828 18 H 0.073 0.927 19 N -0.706 5.706 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.064 3.936 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.185 0.815 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.388 0.612 44 H 0.256 0.744 45 H 0.081 0.919 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 13.427 3.877 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.060 3.940 4 C -0.041 4.041 5 N -0.106 5.106 6 N -0.141 5.141 7 C -0.042 4.042 8 C -0.054 4.054 9 C -0.271 4.271 10 C 0.401 3.599 11 O -0.435 6.435 12 N -0.330 5.330 13 C -0.003 4.003 14 C -0.135 4.135 15 H 0.096 0.904 16 C -0.189 4.189 17 C 0.059 3.941 18 H 0.091 0.909 19 N -0.346 5.346 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.063 4.063 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.202 0.798 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.903 13.447 5.211 15.232 hybrid contribution 0.084 -0.739 -0.241 0.782 sum 4.987 12.708 4.970 14.528 Atomic orbital electron populations 1.22736 0.80624 1.03029 0.99749 1.88006 1.19820 1.26334 1.95418 1.20706 0.85184 0.86003 1.02124 1.21821 0.95467 0.97641 0.89146 1.77082 0.86442 1.24574 1.22544 1.48211 1.06090 1.54923 1.04853 1.21968 0.84039 1.03373 0.94839 1.23168 0.99101 0.98212 0.84879 1.20084 0.92306 1.20342 0.94354 1.16794 0.81852 0.78340 0.82962 1.90687 1.28136 1.43137 1.81580 1.48110 1.26807 1.48783 1.09258 1.21918 0.98972 0.98818 0.80613 1.22542 0.97430 0.96655 0.96906 0.90379 1.21590 1.01370 0.98452 0.97452 1.21341 0.95475 0.87308 0.89960 0.90904 1.42342 1.08377 1.14347 1.69544 1.19175 0.93577 0.94167 1.30909 0.91172 1.24734 0.95557 0.98561 1.01462 1.69660 1.03862 1.31781 1.51861 0.86247 0.77958 0.82805 0.79462 1.21794 1.21761 1.20758 1.23546 0.84841 0.94072 1.03832 0.89366 0.94312 0.93746 0.92057 0.89414 0.90466 0.88883 0.88925 0.79831 0.92320 0.91475 0.91080 0.93821 0.92302 0.77696 0.93407 0.90061 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.61 16 2 O -0.38 -7.11 10.69 -35.23 -0.38 -7.48 16 3 C 0.14 2.33 6.29 36.00 0.23 2.56 16 4 C 0.13 2.31 6.89 -82.02 -0.56 1.74 16 5 N -0.28 -4.83 12.50 33.90 0.42 -4.41 16 6 N -0.36 -5.01 3.98 -67.60 -0.27 -5.28 16 7 C 0.10 0.82 11.44 59.84 0.68 1.51 16 8 C 0.10 1.38 9.55 -16.56 -0.16 1.22 16 9 C -0.26 -4.60 5.67 -105.07 -0.60 -5.20 16 10 C 0.61 11.94 7.67 -12.52 -0.10 11.85 16 11 O -0.56 -11.96 15.81 5.28 0.08 -11.88 16 12 N -0.60 -10.75 3.33 -171.80 -0.57 -11.32 16 13 C 0.12 2.01 6.46 -3.06 -0.02 1.99 16 14 C -0.12 -1.77 3.41 -88.79 -0.30 -2.08 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -2.08 8.77 37.16 0.33 -1.76 16 17 C 0.17 3.11 3.46 -65.78 -0.23 2.88 16 18 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 19 N -0.71 -16.63 4.58 -51.35 -0.24 -16.87 16 20 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -27.67 13.06 55.49 0.72 -26.94 16 24 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.06 1.05 5.05 -2.53 -0.01 1.03 16 29 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.51 6.61 -51.93 -0.34 1.16 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.18 2.01 6.46 -52.48 -0.34 1.67 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.26 7.81 -51.93 -0.41 0.85 16 40 H 0.07 1.36 6.44 -51.93 -0.33 1.02 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.39 10.08 6.36 -40.82 -0.26 9.82 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.08 1.50 6.59 -51.93 -0.34 1.16 16 46 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -35.44 377.72 -6.47 -41.91 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.04 Total: 9.12 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 0.13 Total: 10.42 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.07 Total: -64.82 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.29 Total: -19.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.44 -6.47 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.534 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds