Wall clock time and date at job start Tue Mar 31 2020 14:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99999 * 2 1 4 4 C 1.50694 * 109.46983 * 179.97438 * 3 2 1 5 5 N 1.30458 * 125.99241 * 270.14178 * 4 3 2 6 6 N 1.39929 * 108.89891 * 180.26409 * 5 4 3 7 7 C 1.46494 * 125.75410 * 179.73561 * 6 5 4 8 8 C 1.34262 * 108.48980 * 359.75557 * 6 5 4 9 9 C 1.38041 * 107.42180 * 359.97438 * 8 6 5 10 10 C 1.47425 * 126.41692 * 179.97438 * 9 8 6 11 11 O 1.21602 * 120.00114 * 214.12464 * 10 9 8 12 12 N 1.34779 * 120.00226 * 34.12139 * 10 9 8 13 13 C 1.47019 * 125.64925 * 175.63351 * 12 10 9 14 14 C 1.54326 * 107.26893 * 181.02313 * 13 12 10 15 15 H 1.09003 * 110.72288 * 263.82876 * 14 13 12 16 16 C 1.53001 * 110.87006 * 140.63048 * 14 13 12 17 17 C 1.55151 * 102.94162 * 22.19388 * 14 13 12 18 18 H 1.09004 * 111.00371 * 206.38405 * 17 14 13 19 19 N 1.46505 * 111.00622 * 82.57215 * 17 14 13 20 20 C 1.36933 * 120.00265 * 154.99549 * 19 17 14 21 21 H 1.08002 * 119.99687 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00159 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99904 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47157 * 89.99455 * 24 22 20 26 26 H 1.48491 * 109.47153 * 209.99824 * 24 22 20 27 27 H 1.48501 * 109.46749 * 329.99556 * 24 22 20 28 28 C 1.47422 * 125.64526 * 355.58981 * 12 10 9 29 29 H 1.09008 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46974 * 299.99417 * 1 2 3 31 31 H 1.08993 * 109.47256 * 60.00266 * 1 2 3 32 32 H 1.09000 * 109.46720 * 60.00414 * 3 2 1 33 33 H 1.08992 * 109.47188 * 300.00394 * 3 2 1 34 34 H 1.09000 * 109.47303 * 270.02558 * 7 6 5 35 35 H 1.08997 * 109.47165 * 30.02417 * 7 6 5 36 36 H 1.09008 * 109.47039 * 150.02751 * 7 6 5 37 37 H 1.08009 * 126.28877 * 180.02562 * 8 6 5 38 38 H 1.08997 * 109.88342 * 61.60789 * 13 12 10 39 39 H 1.08991 * 109.88152 * 300.44236 * 13 12 10 40 40 H 1.09002 * 109.46759 * 303.94814 * 16 14 13 41 41 H 1.08995 * 109.47615 * 63.94508 * 16 14 13 42 42 H 1.08994 * 109.47152 * 183.95149 * 16 14 13 43 43 H 0.96997 * 119.99766 * 334.99776 * 19 17 14 44 44 H 0.97008 * 119.99999 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.36936 * 37.07375 * 28 12 10 46 46 H 1.08997 * 110.37208 * 274.74974 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2761 1.1235 1.0565 6 7 5.6101 1.0248 0.6458 7 6 6.7741 0.9380 1.5310 8 6 5.6434 1.0237 -0.6964 9 6 4.3406 1.1202 -1.1423 10 6 3.8968 1.1548 -2.5477 11 8 2.9283 1.8189 -2.8634 12 7 4.5645 0.4504 -3.4828 13 6 4.1802 0.3228 -4.8962 14 6 5.2208 -0.5942 -5.5729 15 1 5.9938 -0.0034 -6.0644 16 6 4.5478 -1.5388 -6.5708 17 6 5.8129 -1.3883 -4.3788 18 1 6.8291 -1.7184 -4.5946 19 7 4.9578 -2.5252 -4.0284 20 6 5.4934 -3.6157 -3.3967 21 1 6.5461 -3.6375 -3.1564 22 6 4.6833 -4.6930 -3.0652 23 7 3.4003 -4.6661 -3.3577 24 14 5.4138 -6.1804 -2.2029 25 1 5.3356 -5.9880 -0.7324 26 1 4.6524 -7.3970 -2.5841 27 1 6.8341 -6.3386 -2.6066 28 6 5.8018 -0.3190 -3.2580 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 7.1385 1.9413 1.7516 35 1 6.4885 0.4430 2.4592 36 1 7.5614 0.3651 1.0409 37 1 6.5272 0.9583 -1.3139 38 1 4.1854 1.3035 -5.3718 39 1 3.1885 -0.1229 -4.9718 40 1 3.7710 -2.1104 -6.0628 41 1 4.1019 -0.9574 -7.3777 42 1 5.2908 -2.2217 -6.9826 43 1 4.0123 -2.5054 -4.2439 44 1 2.8341 -5.4189 -3.1257 45 1 5.7790 -0.7964 -2.2784 46 1 6.6732 0.3301 -3.3443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054819954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:54 Heat of formation + Delta-G solvation = -2.646587 kcal Electronic energy + Delta-G solvation = -28635.994407 eV Core-core repulsion = 24755.370711 eV Total energy + Delta-G solvation = -3880.623696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53574 -40.73343 -38.95057 -38.66533 -35.61464 -34.62197 -33.95825 -32.31719 -31.42678 -29.95775 -29.33613 -27.81068 -27.15674 -26.00430 -25.71661 -23.98147 -22.49366 -21.56492 -20.58763 -20.26930 -19.33633 -18.08779 -17.62124 -17.46286 -17.17105 -16.80958 -16.52244 -16.32046 -16.25305 -15.94800 -15.59730 -15.29266 -14.87362 -14.62184 -14.21816 -13.91013 -13.78954 -13.56464 -13.47602 -13.30411 -13.25473 -13.14868 -12.92791 -12.89091 -12.76466 -12.40099 -12.24009 -12.13167 -12.02581 -11.89117 -11.44166 -11.33847 -11.05539 -10.93101 -10.66746 -10.52864 -9.79392 -9.51686 -8.89116 -7.88580 -5.15672 0.55476 0.88402 1.38661 1.47498 1.48926 1.56820 1.94716 2.39254 2.58915 2.95623 3.36274 3.43227 3.61118 3.66063 3.92650 3.97676 4.01105 4.07995 4.17759 4.20370 4.31718 4.40885 4.44104 4.46547 4.47622 4.49787 4.69179 4.70843 4.71041 4.76253 4.77279 4.79317 4.91830 5.01002 5.06240 5.21327 5.26785 5.32638 5.49437 5.56955 5.65511 5.87185 6.09837 6.32070 6.42593 6.63768 7.23023 7.39116 8.16732 8.37673 9.35087 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008954 B = 0.005044 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.196588 B = 5550.240638 C = 6159.766251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.140 3.860 4 C 0.101 3.899 5 N -0.304 5.304 6 N -0.353 5.353 7 C 0.085 3.915 8 C 0.118 3.882 9 C -0.297 4.297 10 C 0.603 3.397 11 O -0.590 6.590 12 N -0.601 5.601 13 C 0.117 3.883 14 C -0.098 4.098 15 H 0.123 0.877 16 C -0.126 4.126 17 C 0.158 3.842 18 H 0.094 0.906 19 N -0.720 5.720 20 C -0.228 4.228 21 H 0.087 0.913 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.964 3.036 25 H -0.298 1.298 26 H -0.303 1.303 27 H -0.260 1.260 28 C 0.071 3.929 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.224 0.776 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.371 0.629 44 H 0.245 0.755 45 H 0.061 0.939 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.817 14.628 3.994 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.065 4.065 5 N -0.129 5.129 6 N -0.132 5.132 7 C -0.054 4.054 8 C -0.034 4.034 9 C -0.312 4.312 10 C 0.394 3.606 11 O -0.473 6.473 12 N -0.332 5.332 13 C -0.005 4.005 14 C -0.118 4.118 15 H 0.141 0.859 16 C -0.184 4.184 17 C 0.048 3.952 18 H 0.111 0.889 19 N -0.359 5.359 20 C -0.360 4.360 21 H 0.105 0.895 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.794 3.206 25 H -0.226 1.226 26 H -0.231 1.231 27 H -0.184 1.184 28 C -0.054 4.054 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.203 0.797 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.699 14.678 5.340 17.878 hybrid contribution -0.973 -1.027 -0.279 1.442 sum 7.725 13.651 5.061 16.482 Atomic orbital electron populations 1.22931 0.78711 1.03715 1.01297 1.87938 1.22200 1.27766 1.95667 1.20722 0.85249 0.85354 1.02494 1.22065 0.96124 0.98555 0.89800 1.76997 0.88067 1.25231 1.22570 1.48698 1.06163 1.52807 1.05530 1.22491 0.82698 1.05733 0.94431 1.23622 0.98858 0.95631 0.85314 1.20177 0.94122 1.23417 0.93497 1.17138 0.81519 0.78112 0.83861 1.90647 1.29594 1.44795 1.82245 1.48214 1.27263 1.48283 1.09404 1.21983 0.97995 0.99875 0.80668 1.22531 0.97610 0.95953 0.95698 0.85931 1.21517 1.00337 0.98556 0.97986 1.21723 0.95544 0.86348 0.91610 0.88861 1.42550 1.08227 1.15617 1.69490 1.19663 0.94030 0.94204 1.28101 0.89537 1.25493 0.95975 1.01703 1.03811 1.69842 1.05364 1.32221 1.54714 0.85270 0.78112 0.79418 0.77765 1.22568 1.23063 1.18448 1.23523 0.85920 0.94152 1.01780 0.89161 0.91404 0.93503 0.89832 0.90690 0.87730 0.88783 0.85926 0.76016 0.90451 0.94780 0.95239 0.91345 0.92182 0.79695 0.94591 0.92071 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.42 -16.40 10.69 -148.98 -1.59 -17.99 16 3 C 0.14 4.91 6.29 71.23 0.45 5.36 16 4 C 0.10 3.73 6.89 43.51 0.30 4.03 16 5 N -0.30 -10.21 12.50 -46.67 -0.58 -10.79 16 6 N -0.35 -8.95 3.98 -367.78 -1.46 -10.41 16 7 C 0.08 1.10 11.44 127.77 1.46 2.56 16 8 C 0.12 3.07 9.55 84.27 0.81 3.88 16 9 C -0.30 -10.57 5.67 -20.15 -0.11 -10.69 16 10 C 0.60 23.70 7.67 86.66 0.66 24.36 16 11 O -0.59 -26.31 15.81 -4.04 -0.06 -26.37 16 12 N -0.60 -20.87 3.33 -815.69 -2.71 -23.58 16 13 C 0.12 3.82 6.46 86.73 0.56 4.38 16 14 C -0.10 -2.74 3.41 -9.61 -0.03 -2.78 16 15 H 0.12 2.45 8.14 -2.39 -0.02 2.44 16 16 C -0.13 -3.86 8.77 71.98 0.63 -3.23 16 17 C 0.16 5.26 3.46 46.38 0.16 5.42 16 18 H 0.09 2.78 8.09 -2.39 -0.02 2.76 16 19 N -0.72 -33.69 4.58 -316.38 -1.45 -35.14 16 20 C -0.23 -11.83 9.96 84.03 0.84 -11.00 16 21 H 0.09 4.13 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 24 Si 0.96 45.77 29.55 68.60 2.03 47.80 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 C 0.07 2.11 5.05 86.86 0.44 2.55 16 29 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.75 6.61 -2.39 -0.02 2.74 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.22 3.76 6.46 -2.91 -0.02 3.75 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 1.32 7.81 -2.39 -0.02 1.30 16 40 H 0.03 1.14 6.44 -2.39 -0.02 1.13 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.37 19.89 6.36 -92.71 -0.59 19.30 16 44 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 45 H 0.06 2.10 6.59 -2.39 -0.02 2.08 16 46 H 0.11 2.07 7.71 -2.39 -0.02 2.05 16 Total: -1.00 -82.23 377.72 2.72 -79.51 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.40 Total: 33.99 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 7.88 Total: 23.02 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -5.93 Total: -139.95 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.66 Total: -44.36 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -82.23 2.72 -79.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.860 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds