Wall clock time and date at job start Tue Mar 31 2020 14:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99852 * 2 1 4 4 C 1.50696 * 109.46815 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98870 * 89.98602 * 4 3 2 6 6 N 1.39934 * 108.89760 * 180.02562 * 5 4 3 7 7 C 1.46503 * 125.75050 * 179.97438 * 6 5 4 8 8 C 1.34255 * 108.49480 * 359.97438 * 6 5 4 9 9 C 1.38042 * 107.41504 * 0.23095 * 8 6 5 10 10 C 1.47437 * 126.41535 * 179.73417 * 9 8 6 11 11 O 1.21606 * 119.99920 * 204.60520 * 10 9 8 12 12 N 1.34774 * 119.99674 * 24.60722 * 10 9 8 13 13 C 1.47421 * 125.64800 * 5.12382 * 12 10 9 14 14 C 1.55133 * 104.72194 * 155.82175 * 13 12 10 15 15 H 1.08999 * 111.22276 * 279.17680 * 14 13 12 16 16 N 1.46501 * 110.91025 * 155.27473 * 14 13 12 17 17 C 1.36933 * 120.00045 * 92.97516 * 16 14 13 18 18 H 1.08004 * 119.99676 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00007 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47238 * 89.99484 * 21 19 17 23 23 H 1.48499 * 109.46952 * 209.99900 * 21 19 17 24 24 H 1.48506 * 109.46994 * 329.99447 * 21 19 17 25 25 C 1.55154 * 101.48674 * 37.29054 * 14 13 12 26 26 H 1.09005 * 110.71789 * 82.69964 * 25 14 13 27 27 C 1.52999 * 110.87752 * 205.90270 * 25 14 13 28 28 C 1.47020 * 125.64556 * 185.43758 * 12 10 9 29 29 H 1.09004 * 109.47581 * 59.99605 * 1 2 3 30 30 H 1.08999 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47013 * 299.99640 * 1 2 3 32 32 H 1.09001 * 109.46284 * 60.00495 * 3 2 1 33 33 H 1.08999 * 109.47327 * 300.00776 * 3 2 1 34 34 H 1.08998 * 109.47061 * 270.01879 * 7 6 5 35 35 H 1.08992 * 109.47328 * 30.02313 * 7 6 5 36 36 H 1.09005 * 109.47024 * 150.02089 * 7 6 5 37 37 H 1.07997 * 126.29420 * 179.97438 * 8 6 5 38 38 H 1.09004 * 110.36813 * 274.74083 * 13 12 10 39 39 H 1.08994 * 110.36884 * 37.07273 * 13 12 10 40 40 H 0.97000 * 119.99683 * 272.97866 * 16 14 13 41 41 H 0.96993 * 119.99447 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47363 * 175.07136 * 27 25 14 43 43 H 1.09002 * 109.46952 * 295.06680 * 27 25 14 44 44 H 1.08996 * 109.47100 * 55.06054 * 27 25 14 45 45 H 1.09007 * 109.88188 * 300.43412 * 28 12 10 46 46 H 1.08997 * 109.88934 * 61.44508 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2761 1.1259 -1.0565 6 7 5.6096 1.0197 -0.6458 7 6 6.7731 0.9267 -1.5312 8 6 5.6430 1.0174 0.6964 9 6 4.3403 1.1160 1.1422 10 6 3.8960 1.1443 2.5478 11 8 2.7690 0.7903 2.8365 12 7 4.7390 1.5626 3.5126 13 6 6.0875 2.1169 3.2942 14 6 6.3653 2.9841 4.5502 15 1 5.8888 3.9610 4.4685 16 7 7.8053 3.1231 4.7815 17 6 8.4814 4.1956 4.2642 18 1 7.9532 4.9388 3.6854 19 6 9.8457 4.3275 4.4838 20 7 10.4958 5.3582 3.9862 21 14 10.7593 3.0417 5.4844 22 1 11.2597 1.9749 4.5806 23 1 11.9059 3.6789 6.1805 24 1 9.8386 2.4490 6.4876 25 6 5.7024 2.1336 5.6657 26 1 6.3754 1.3440 6.0000 27 6 5.2772 3.0140 6.8426 28 6 4.4685 1.5357 4.9574 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6885 1.8463 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 6.9798 -0.1208 -1.7507 35 1 6.5665 1.4587 -2.4597 36 1 7.6388 1.3729 -1.0416 37 1 6.5263 0.9467 1.3137 38 1 6.8198 1.3134 3.2158 39 1 6.1029 2.7346 2.3963 40 1 8.2797 2.4553 5.3010 41 1 11.4491 5.4501 4.1394 42 1 4.7376 2.4099 7.5719 43 1 6.1615 3.4457 7.3115 44 1 4.6298 3.8137 6.4828 45 1 3.5861 2.1356 5.1806 46 1 4.3110 0.5085 5.2861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054819955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:58 Heat of formation + Delta-G solvation = 23.431828 kcal Electronic energy + Delta-G solvation = -27938.487465 eV Core-core repulsion = 24058.994614 eV Total energy + Delta-G solvation = -3879.492851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50566 -39.51015 -37.81323 -37.37597 -34.23787 -33.67165 -32.70380 -31.18609 -30.38770 -29.02947 -27.98377 -26.84106 -26.14197 -24.98360 -23.91599 -22.37192 -21.02947 -20.64375 -19.97391 -19.16885 -17.64358 -16.98532 -16.60076 -16.28990 -16.07102 -15.74716 -15.44137 -15.29156 -14.92073 -14.52531 -14.16106 -13.85359 -13.45097 -13.27673 -13.12996 -13.03734 -12.91223 -12.67179 -12.55406 -12.34606 -12.16933 -12.02323 -11.75755 -11.44947 -11.43768 -11.19905 -10.98921 -10.78301 -10.67564 -10.41051 -10.08743 -9.82710 -9.72030 -9.57333 -9.53262 -9.10499 -8.70833 -8.32428 -7.45893 -5.91626 -3.29817 1.54426 1.98424 2.25112 3.22822 3.26728 3.29255 3.36348 3.43423 3.99046 4.32933 4.45122 4.62793 4.69736 4.84680 4.97155 4.99111 5.04933 5.09579 5.17070 5.24799 5.27399 5.32312 5.39626 5.42180 5.45356 5.49293 5.60814 5.64514 5.71219 5.74655 5.76915 5.88442 6.04391 6.11013 6.26237 6.29770 6.30326 6.44849 6.55925 6.70019 6.74610 7.09542 7.48913 7.79139 7.83580 8.26951 8.46986 9.03656 9.75667 9.94050 11.25938 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003741 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.106503 B = 7482.236741 C = 8994.883228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.377 6.377 3 C 0.149 3.851 4 C 0.124 3.876 5 N -0.284 5.284 6 N -0.358 5.358 7 C 0.095 3.905 8 C 0.103 3.897 9 C -0.268 4.268 10 C 0.606 3.394 11 O -0.544 6.544 12 N -0.613 5.613 13 C 0.070 3.930 14 C 0.183 3.817 15 H 0.078 0.922 16 N -0.734 5.734 17 C -0.253 4.253 18 H 0.092 0.908 19 C 0.010 3.990 20 N -0.929 5.929 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.275 1.275 25 C -0.118 4.118 26 H 0.081 0.919 27 C -0.135 4.135 28 C 0.120 3.880 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.364 0.636 41 H 0.261 0.739 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 -9.435 -6.095 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.295 6.295 3 C 0.071 3.929 4 C -0.044 4.044 5 N -0.107 5.107 6 N -0.137 5.137 7 C -0.045 4.045 8 C -0.048 4.048 9 C -0.283 4.283 10 C 0.395 3.605 11 O -0.422 6.422 12 N -0.347 5.347 13 C -0.056 4.056 14 C 0.071 3.929 15 H 0.096 0.904 16 N -0.375 5.375 17 C -0.382 4.382 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.575 5.575 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.201 1.201 25 C -0.138 4.138 26 H 0.099 0.901 27 C -0.192 4.192 28 C -0.003 4.003 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.197 0.803 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.821 -9.585 -7.490 17.673 hybrid contribution 0.986 -0.684 1.458 1.888 sum -11.835 -10.269 -6.032 16.790 Atomic orbital electron populations 1.22711 0.80764 1.02698 0.99938 1.87932 1.19648 1.26503 1.95394 1.20523 0.85072 0.85819 1.01502 1.21833 0.95407 0.97900 0.89217 1.77094 0.86578 1.24465 1.22572 1.48306 1.06181 1.54169 1.05002 1.22055 0.83967 1.03781 0.94740 1.23479 0.99305 0.97065 0.84943 1.20112 0.92138 1.21849 0.94225 1.16872 0.83844 0.76760 0.83006 1.90748 1.19134 1.49551 1.82800 1.48290 1.17405 1.62676 1.06339 1.23563 0.81864 0.97500 1.02632 1.21388 0.85543 0.96125 0.89839 0.90376 1.42654 1.03165 1.28107 1.63612 1.19068 0.91253 1.00379 1.27511 0.89022 1.24677 0.96376 0.97490 1.00081 1.69698 1.08786 1.29900 1.49153 0.86594 0.79926 0.81730 0.80513 1.21034 1.21649 1.20140 1.22564 0.96089 0.98766 0.96415 0.90091 1.21660 1.01667 0.99012 0.96881 1.21925 0.98071 1.00690 0.79609 0.94292 0.89684 0.93670 0.90394 0.92024 0.90219 0.88786 0.88472 0.79299 0.91683 0.90688 0.80251 0.92876 0.93082 0.91594 0.92511 0.91412 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.58 10.69 -35.23 -0.38 -5.95 16 3 C 0.15 2.09 5.85 36.00 0.21 2.30 16 4 C 0.12 1.95 6.89 -82.02 -0.56 1.38 16 5 N -0.28 -4.31 12.50 33.90 0.42 -3.89 16 6 N -0.36 -4.61 3.98 -67.60 -0.27 -4.88 16 7 C 0.10 0.78 11.44 59.85 0.68 1.46 16 8 C 0.10 1.39 9.67 -16.56 -0.16 1.23 16 9 C -0.27 -4.24 5.79 -105.06 -0.61 -4.85 16 10 C 0.61 10.28 7.71 -12.52 -0.10 10.18 16 11 O -0.54 -10.45 15.97 5.27 0.08 -10.37 16 12 N -0.61 -9.49 3.32 -171.64 -0.57 -10.06 16 13 C 0.07 1.09 4.90 -2.41 -0.01 1.08 16 14 C 0.18 3.12 3.18 -65.66 -0.21 2.91 16 15 H 0.08 1.42 8.00 -51.93 -0.42 1.01 16 16 N -0.73 -15.28 5.04 -51.24 -0.26 -15.54 16 17 C -0.25 -6.44 10.44 -15.06 -0.16 -6.60 16 18 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 21 Si 0.88 20.40 27.74 -169.99 -4.71 15.69 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -5.95 6.52 56.52 0.37 -5.58 16 25 C -0.12 -1.68 3.18 -88.79 -0.28 -1.96 16 26 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 27 C -0.13 -1.75 9.14 37.16 0.34 -1.42 16 28 C 0.12 1.70 6.47 -3.06 -0.02 1.68 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.10 7.29 -51.93 -0.38 0.72 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.19 2.19 5.92 -52.49 -0.31 1.88 16 38 H 0.07 0.97 7.31 -51.93 -0.38 0.59 16 39 H 0.07 1.19 6.90 -51.93 -0.36 0.83 16 40 H 0.36 7.48 5.62 -40.82 -0.23 7.25 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.07 0.95 7.82 -51.92 -0.41 0.54 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -33.66 377.90 -6.20 -39.86 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.13 Total: 7.00 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.14 Total: 9.06 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.10 Total: -60.98 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.29 Total: -16.32 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.66 -6.20 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.296 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds