Wall clock time and date at job start Tue Mar 31 2020 14:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99852 * 2 1 4 4 C 1.50696 * 109.46815 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98870 * 89.98602 * 4 3 2 6 6 N 1.39934 * 108.89760 * 180.02562 * 5 4 3 7 7 C 1.46503 * 125.75050 * 179.97438 * 6 5 4 8 8 C 1.34255 * 108.49480 * 359.97438 * 6 5 4 9 9 C 1.38042 * 107.41504 * 0.23095 * 8 6 5 10 10 C 1.47437 * 126.41535 * 179.73417 * 9 8 6 11 11 O 1.21606 * 119.99920 * 204.60520 * 10 9 8 12 12 N 1.34774 * 119.99674 * 24.60722 * 10 9 8 13 13 C 1.47421 * 125.64800 * 5.12382 * 12 10 9 14 14 C 1.55133 * 104.72194 * 155.82175 * 13 12 10 15 15 H 1.08999 * 111.22276 * 279.17680 * 14 13 12 16 16 N 1.46501 * 110.91025 * 155.27473 * 14 13 12 17 17 C 1.36933 * 120.00045 * 92.97516 * 16 14 13 18 18 H 1.08004 * 119.99676 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00007 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99982 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47238 * 89.99484 * 21 19 17 23 23 H 1.48499 * 109.46952 * 209.99900 * 21 19 17 24 24 H 1.48506 * 109.46994 * 329.99447 * 21 19 17 25 25 C 1.55154 * 101.48674 * 37.29054 * 14 13 12 26 26 H 1.09005 * 110.71789 * 82.69964 * 25 14 13 27 27 C 1.52999 * 110.87752 * 205.90270 * 25 14 13 28 28 C 1.47020 * 125.64556 * 185.43758 * 12 10 9 29 29 H 1.09004 * 109.47581 * 59.99605 * 1 2 3 30 30 H 1.08999 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47013 * 299.99640 * 1 2 3 32 32 H 1.09001 * 109.46284 * 60.00495 * 3 2 1 33 33 H 1.08999 * 109.47327 * 300.00776 * 3 2 1 34 34 H 1.08998 * 109.47061 * 270.01879 * 7 6 5 35 35 H 1.08992 * 109.47328 * 30.02313 * 7 6 5 36 36 H 1.09005 * 109.47024 * 150.02089 * 7 6 5 37 37 H 1.07997 * 126.29420 * 179.97438 * 8 6 5 38 38 H 1.09004 * 110.36813 * 274.74083 * 13 12 10 39 39 H 1.08994 * 110.36884 * 37.07273 * 13 12 10 40 40 H 0.97000 * 119.99683 * 272.97866 * 16 14 13 41 41 H 0.96993 * 119.99447 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.47363 * 175.07136 * 27 25 14 43 43 H 1.09002 * 109.46952 * 295.06680 * 27 25 14 44 44 H 1.08996 * 109.47100 * 55.06054 * 27 25 14 45 45 H 1.09007 * 109.88188 * 300.43412 * 28 12 10 46 46 H 1.08997 * 109.88934 * 61.44508 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 7 4.2761 1.1259 -1.0565 6 7 5.6096 1.0197 -0.6458 7 6 6.7731 0.9267 -1.5312 8 6 5.6430 1.0174 0.6964 9 6 4.3403 1.1160 1.1422 10 6 3.8960 1.1443 2.5478 11 8 2.7690 0.7903 2.8365 12 7 4.7390 1.5626 3.5126 13 6 6.0875 2.1169 3.2942 14 6 6.3653 2.9841 4.5502 15 1 5.8888 3.9610 4.4685 16 7 7.8053 3.1231 4.7815 17 6 8.4814 4.1956 4.2642 18 1 7.9532 4.9388 3.6854 19 6 9.8457 4.3275 4.4838 20 7 10.4958 5.3582 3.9862 21 14 10.7593 3.0417 5.4844 22 1 11.2597 1.9749 4.5806 23 1 11.9059 3.6789 6.1805 24 1 9.8386 2.4490 6.4876 25 6 5.7024 2.1336 5.6657 26 1 6.3754 1.3440 6.0000 27 6 5.2772 3.0140 6.8426 28 6 4.4685 1.5357 4.9574 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6885 1.8463 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 6.9798 -0.1208 -1.7507 35 1 6.5665 1.4587 -2.4597 36 1 7.6388 1.3729 -1.0416 37 1 6.5263 0.9467 1.3137 38 1 6.8198 1.3134 3.2158 39 1 6.1029 2.7346 2.3963 40 1 8.2797 2.4553 5.3010 41 1 11.4491 5.4501 4.1394 42 1 4.7376 2.4099 7.5719 43 1 6.1615 3.4457 7.3115 44 1 4.6298 3.8137 6.4828 45 1 3.5861 2.1356 5.1806 46 1 4.3110 0.5085 5.2861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054819955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:57 Heat of formation + Delta-G solvation = -0.718445 kcal Electronic energy + Delta-G solvation = -27939.534699 eV Core-core repulsion = 24058.994614 eV Total energy + Delta-G solvation = -3880.540086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.59181 -40.77560 -38.92696 -38.62311 -35.93389 -34.64066 -34.07158 -32.95294 -31.49994 -29.95367 -29.46983 -27.83147 -27.12813 -26.04110 -25.53435 -23.66620 -22.34156 -21.83765 -21.26369 -20.30961 -19.48470 -18.14344 -17.66850 -17.48174 -17.32106 -16.74954 -16.46780 -16.41127 -16.19098 -16.00035 -15.54934 -15.07091 -14.83884 -14.67088 -14.46471 -14.20175 -13.98876 -13.77605 -13.55414 -13.40299 -13.25084 -13.15589 -13.03371 -12.93585 -12.89618 -12.34217 -12.20713 -12.11664 -12.02291 -11.88343 -11.78310 -11.42247 -11.05817 -10.92361 -10.63296 -10.58371 -9.86443 -9.59627 -9.27679 -7.98121 -5.33645 0.46739 0.83782 1.32110 1.44605 1.46654 1.54306 1.99655 2.22516 2.52779 2.98739 3.30386 3.31731 3.42511 3.63701 3.71718 3.86373 3.95521 4.04627 4.10625 4.17455 4.31045 4.34138 4.38796 4.41121 4.43714 4.53409 4.57789 4.58921 4.67289 4.72382 4.77072 4.84439 4.86381 4.92772 5.08684 5.12591 5.18916 5.26990 5.39292 5.47775 5.78491 5.81587 6.15508 6.24756 6.38915 6.53127 7.10202 7.19314 7.83617 8.04162 9.22756 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.003741 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.106503 B = 7482.236741 C = 8994.883228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.151 3.849 4 C 0.108 3.892 5 N -0.301 5.301 6 N -0.353 5.353 7 C 0.084 3.916 8 C 0.113 3.887 9 C -0.298 4.298 10 C 0.605 3.395 11 O -0.573 6.573 12 N -0.611 5.611 13 C 0.082 3.918 14 C 0.175 3.825 15 H 0.062 0.938 16 N -0.733 5.733 17 C -0.229 4.229 18 H 0.058 0.942 19 C -0.057 4.057 20 N -0.982 5.982 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.304 1.304 24 H -0.247 1.247 25 C -0.105 4.105 26 H 0.093 0.907 27 C -0.133 4.133 28 C 0.121 3.879 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.209 0.791 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.370 0.630 41 H 0.257 0.743 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 -11.448 -5.591 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C 0.072 3.928 4 C -0.059 4.059 5 N -0.125 5.125 6 N -0.131 5.131 7 C -0.055 4.055 8 C -0.040 4.040 9 C -0.313 4.313 10 C 0.395 3.605 11 O -0.453 6.453 12 N -0.344 5.344 13 C -0.044 4.044 14 C 0.065 3.935 15 H 0.080 0.920 16 N -0.375 5.375 17 C -0.359 4.359 18 H 0.076 0.924 19 C -0.249 4.249 20 N -0.632 5.632 21 Si 0.777 3.223 22 H -0.202 1.202 23 H -0.232 1.232 24 H -0.172 1.172 25 C -0.125 4.125 26 H 0.111 0.889 27 C -0.190 4.190 28 C -0.002 4.002 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.226 0.774 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.204 0.796 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.920 -11.634 -6.991 18.739 hybrid contribution 0.918 -0.017 1.222 1.528 sum -12.002 -11.651 -5.769 17.694 Atomic orbital electron populations 1.22927 0.78784 1.03971 1.00949 1.87880 1.21933 1.26978 1.95580 1.20535 0.84559 0.85788 1.01870 1.22139 0.96287 0.98072 0.89384 1.77037 0.87688 1.25046 1.22747 1.48714 1.06433 1.52576 1.05392 1.22471 0.82856 1.05497 0.94652 1.23702 0.99059 0.95745 0.85455 1.20189 0.93312 1.23996 0.93788 1.17044 0.83509 0.76315 0.83596 1.90723 1.20262 1.51036 1.83304 1.48267 1.17120 1.62175 1.06815 1.23332 0.82269 0.97506 1.01277 1.21492 0.83579 0.96360 0.92080 0.92034 1.42518 1.04481 1.26936 1.63531 1.18968 0.91139 1.00322 1.25513 0.92358 1.25429 0.97467 0.99833 1.02134 1.69882 1.08844 1.32674 1.51838 0.85501 0.78339 0.79053 0.79423 1.20186 1.23173 1.17174 1.22488 0.95832 0.98478 0.95676 0.88894 1.21651 1.01350 0.99144 0.96857 1.22007 0.98000 1.01420 0.78765 0.92263 0.88338 0.93633 0.91289 0.90242 0.88249 0.87899 0.86648 0.77418 0.90212 0.91290 0.79561 0.93424 0.90541 0.92847 0.92700 0.91298 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -11.92 10.69 -148.98 -1.59 -13.51 16 3 C 0.15 4.23 5.85 71.23 0.42 4.65 16 4 C 0.11 3.38 6.89 43.51 0.30 3.68 16 5 N -0.30 -8.93 12.50 -46.68 -0.58 -9.51 16 6 N -0.35 -8.54 3.98 -367.79 -1.46 -10.01 16 7 C 0.08 1.18 11.44 127.77 1.46 2.64 16 8 C 0.11 2.87 9.67 84.28 0.81 3.69 16 9 C -0.30 -9.26 5.79 -20.15 -0.12 -9.37 16 10 C 0.60 20.17 7.71 86.67 0.67 20.84 16 11 O -0.57 -21.94 15.97 -4.05 -0.06 -22.00 16 12 N -0.61 -18.03 3.32 -815.21 -2.71 -20.74 16 13 C 0.08 2.39 4.90 86.93 0.43 2.82 16 14 C 0.18 5.73 3.18 46.46 0.15 5.87 16 15 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 16 N -0.73 -29.24 5.04 -316.01 -1.59 -30.84 16 17 C -0.23 -11.64 10.44 84.03 0.88 -10.77 16 18 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 19 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 20 N -0.98 -59.16 13.97 21.65 0.30 -58.86 16 21 Si 0.95 41.30 27.74 68.60 1.90 43.20 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.25 -9.49 6.52 99.48 0.65 -8.84 16 25 C -0.11 -2.71 3.18 -9.61 -0.03 -2.74 16 26 H 0.09 2.25 8.00 -2.38 -0.02 2.23 16 27 C -0.13 -3.14 9.14 71.98 0.66 -2.48 16 28 C 0.12 3.15 6.47 86.73 0.56 3.71 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 2.00 7.29 -2.39 -0.02 1.98 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.21 4.32 5.92 -2.91 -0.02 4.30 16 38 H 0.08 2.14 7.31 -2.39 -0.02 2.12 16 39 H 0.07 2.12 6.90 -2.39 -0.02 2.10 16 40 H 0.37 14.05 5.62 -92.71 -0.52 13.53 16 41 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 45 H 0.07 1.81 7.82 -2.38 -0.02 1.79 16 46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -73.69 377.90 2.50 -71.19 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.41 Total: 29.31 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 7.90 Total: 21.77 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -6.05 Total: -129.95 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.66 Total: -35.51 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.90 Total: 43.20 kcal Total: -73.69 2.50 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.469 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds