Wall clock time and date at job start Tue Mar 31 2020 14:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00402 * 2 1 4 4 C 1.50697 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99079 * 90.01947 * 4 3 2 6 6 N 1.39935 * 108.90076 * 180.02562 * 5 4 3 7 7 C 1.46498 * 125.75446 * 180.02562 * 6 5 4 8 8 C 1.34254 * 108.49036 * 0.02562 * 6 5 4 9 9 C 1.38054 * 107.41897 * 359.73230 * 8 6 5 10 10 C 1.47420 * 126.41348 * 180.25909 * 9 8 6 11 11 O 1.21605 * 120.00017 * 145.88111 * 10 9 8 12 12 N 1.34773 * 120.00411 * 325.87393 * 10 9 8 13 13 C 1.47022 * 125.64915 * 184.10048 * 12 10 9 14 14 C 1.54343 * 107.26419 * 178.85175 * 13 12 10 15 15 H 1.09001 * 110.51524 * 96.45458 * 14 13 12 16 16 C 1.52997 * 110.99915 * 219.60394 * 14 13 12 17 17 C 1.55153 * 103.01891 * 338.14230 * 14 13 12 18 18 H 1.09001 * 111.00512 * 153.38458 * 17 14 13 19 19 N 1.46506 * 111.00552 * 277.23215 * 17 14 13 20 20 C 1.36942 * 120.00042 * 198.65373 * 19 17 14 21 21 H 1.08003 * 119.99774 * 359.97438 * 20 19 17 22 22 C 1.38807 * 119.99853 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47418 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47266 * 120.00260 * 24 22 20 27 27 H 1.48511 * 109.46880 * 239.99777 * 24 22 20 28 28 C 1.47421 * 125.64695 * 4.41024 * 12 10 9 29 29 H 1.09001 * 109.46940 * 60.00063 * 1 2 3 30 30 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47409 * 300.00192 * 1 2 3 32 32 H 1.09000 * 109.47030 * 59.99530 * 3 2 1 33 33 H 1.09002 * 109.47060 * 299.99861 * 3 2 1 34 34 H 1.08997 * 109.47024 * 89.97615 * 7 6 5 35 35 H 1.09000 * 109.47033 * 209.98101 * 7 6 5 36 36 H 1.09002 * 109.46867 * 329.97824 * 7 6 5 37 37 H 1.08003 * 126.29061 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.88676 * 298.39460 * 13 12 10 39 39 H 1.09001 * 109.87945 * 59.56716 * 13 12 10 40 40 H 1.09003 * 109.46782 * 173.78177 * 16 14 13 41 41 H 1.08996 * 109.47448 * 293.77795 * 16 14 13 42 42 H 1.09000 * 109.47332 * 53.78117 * 16 14 13 43 43 H 0.96997 * 120.00045 * 18.64872 * 19 17 14 44 44 H 0.97008 * 120.00123 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.37035 * 322.93323 * 28 12 10 46 46 H 1.09008 * 110.36378 * 85.25512 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2772 1.1260 -1.0545 6 7 5.6104 1.0197 -0.6427 7 6 6.7747 0.9280 -1.5270 8 6 5.6424 1.0160 0.6995 9 6 4.3401 1.1253 1.1442 10 6 3.8958 1.1670 2.5493 11 8 2.9330 1.8404 2.8628 12 7 4.5565 0.4586 3.4863 13 6 4.1732 0.3421 4.9009 14 6 5.2020 -0.5873 5.5792 15 1 5.9799 -0.0024 6.0699 16 6 4.5198 -1.5236 6.5786 17 6 5.7877 -1.3893 4.3872 18 1 6.8010 -1.7276 4.6041 19 7 4.9226 -2.5192 4.0387 20 6 5.4183 -3.5575 3.2961 21 1 6.4468 -3.5433 2.9669 22 6 4.5987 -4.6282 2.9664 23 7 3.3455 -4.6457 3.3680 24 14 5.2750 -6.0449 1.9540 25 1 6.7011 -5.7861 1.6310 26 1 5.1638 -7.3057 2.7306 27 1 4.4974 -6.1689 0.6948 28 6 5.7869 -0.3224 3.2641 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 7.1446 1.9297 -1.7458 35 1 7.5584 0.3502 -1.0371 36 1 6.4874 0.4359 -2.4562 37 1 6.5253 0.9457 1.3176 38 1 4.1913 1.3247 5.3721 39 1 3.1762 -0.0912 4.9803 40 1 5.2473 -2.2402 6.9600 41 1 4.1164 -0.9402 7.4061 42 1 3.7099 -2.0577 6.0817 43 1 3.9988 -2.5318 4.3341 44 1 2.7728 -5.3942 3.1379 45 1 5.7604 -0.8018 2.2854 46 1 6.6641 0.3190 3.3496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054819956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:01 Heat of formation + Delta-G solvation = 23.809188 kcal Electronic energy + Delta-G solvation = -28676.282837 eV Core-core repulsion = 24796.806349 eV Total energy + Delta-G solvation = -3879.476488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34083 -39.34685 -37.60857 -37.22544 -33.81966 -33.54876 -32.46597 -30.61537 -30.14788 -28.86048 -27.74716 -26.65211 -25.92558 -24.78225 -23.88786 -22.62877 -21.21242 -20.30589 -19.18543 -18.99066 -17.47917 -16.74659 -16.34380 -16.10861 -15.81329 -15.55541 -15.31157 -15.05681 -14.76732 -14.48629 -14.07971 -13.73608 -13.55747 -13.03045 -12.93237 -12.88625 -12.70018 -12.39061 -12.15325 -12.09966 -11.95972 -11.88655 -11.50211 -11.20291 -11.09580 -10.91945 -10.82779 -10.67710 -10.44755 -10.23792 -9.90535 -9.67262 -9.61757 -9.38605 -9.32373 -8.99436 -8.52331 -8.09836 -6.98023 -5.78854 -3.08214 1.69827 2.20617 2.37962 3.34145 3.41440 3.45475 3.49504 3.74196 4.13828 4.49031 4.55617 4.71061 4.89661 4.98183 4.98718 5.18616 5.21721 5.25846 5.34724 5.38173 5.48172 5.54779 5.56949 5.62467 5.66054 5.67992 5.79495 5.88771 5.94594 5.95306 6.02392 6.20337 6.24567 6.36305 6.41135 6.47123 6.54053 6.68176 6.80936 6.89808 6.95698 7.32934 7.64360 7.66324 8.03722 8.38736 8.66776 9.50764 10.06764 10.41043 11.43295 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.005202 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.515924 B = 5381.755052 C = 6045.403034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.138 3.862 4 C 0.127 3.873 5 N -0.283 5.283 6 N -0.361 5.361 7 C 0.099 3.901 8 C 0.097 3.903 9 C -0.256 4.256 10 C 0.611 3.389 11 O -0.556 6.556 12 N -0.597 5.597 13 C 0.119 3.881 14 C -0.113 4.113 15 H 0.079 0.921 16 C -0.132 4.132 17 C 0.172 3.828 18 H 0.069 0.931 19 N -0.707 5.707 20 C -0.246 4.246 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.925 5.925 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.064 3.936 29 H 0.038 0.962 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.185 0.815 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.082 0.918 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 13.328 -3.710 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.296 6.296 3 C 0.060 3.940 4 C -0.040 4.040 5 N -0.107 5.107 6 N -0.141 5.141 7 C -0.042 4.042 8 C -0.053 4.053 9 C -0.271 4.271 10 C 0.401 3.599 11 O -0.436 6.436 12 N -0.329 5.329 13 C -0.003 4.003 14 C -0.133 4.133 15 H 0.097 0.903 16 C -0.189 4.189 17 C 0.059 3.941 18 H 0.087 0.913 19 N -0.348 5.348 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.062 4.062 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.202 0.798 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.073 13.377 -5.067 15.177 hybrid contribution 0.051 -0.727 0.190 0.753 sum 5.124 12.650 -4.877 14.493 Atomic orbital electron populations 1.22735 0.80625 1.03027 0.99742 1.88007 1.19815 1.26323 1.95415 1.20704 0.85194 0.86003 1.02123 1.21810 0.95452 0.97631 0.89149 1.77078 0.86454 1.24597 1.22531 1.48210 1.06143 1.54887 1.04847 1.21967 0.84032 1.03351 0.94863 1.23165 0.99114 0.98176 0.84884 1.20085 0.92335 1.20315 0.94342 1.16792 0.81788 0.78392 0.82962 1.90687 1.28410 1.42815 1.81668 1.48095 1.27396 1.48265 1.09107 1.21921 0.99022 0.98750 0.80618 1.22496 0.97513 0.96546 0.96739 0.90313 1.21595 1.01419 0.98512 0.97414 1.21341 0.95325 0.87393 0.89992 0.91287 1.42369 1.11402 1.18039 1.63016 1.19197 0.95663 0.96996 1.25795 0.91164 1.24726 0.95798 0.98751 1.01054 1.69665 1.05414 1.32097 1.50015 0.86182 0.77840 0.82668 0.79813 1.20621 1.21845 1.21905 1.23527 0.84938 0.93847 1.03922 0.94313 0.89368 0.93752 0.89437 0.92047 0.90471 0.88928 0.88890 0.79843 0.92288 0.91476 0.92152 0.93693 0.91231 0.77662 0.93471 0.89993 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.38 -7.15 10.69 -35.23 -0.38 -7.53 16 3 C 0.14 2.34 6.30 36.00 0.23 2.57 16 4 C 0.13 2.33 6.89 -82.02 -0.56 1.76 16 5 N -0.28 -4.85 12.50 33.89 0.42 -4.43 16 6 N -0.36 -5.04 3.98 -67.60 -0.27 -5.31 16 7 C 0.10 0.83 11.44 59.85 0.68 1.51 16 8 C 0.10 1.39 9.55 -16.56 -0.16 1.24 16 9 C -0.26 -4.62 5.67 -105.07 -0.60 -5.22 16 10 C 0.61 12.00 7.67 -12.52 -0.10 11.90 16 11 O -0.56 -12.02 15.83 5.27 0.08 -11.93 16 12 N -0.60 -10.79 3.33 -171.78 -0.57 -11.36 16 13 C 0.12 2.01 6.48 -3.05 -0.02 1.99 16 14 C -0.11 -1.73 3.40 -88.78 -0.30 -2.04 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.13 -2.07 8.73 37.16 0.32 -1.74 16 17 C 0.17 3.11 3.44 -65.78 -0.23 2.89 16 18 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 19 N -0.71 -16.69 4.74 -51.35 -0.24 -16.93 16 20 C -0.25 -6.49 9.98 -15.06 -0.15 -6.64 16 21 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -27.70 13.06 55.49 0.72 -26.98 16 24 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C 0.06 1.06 5.05 -2.53 -0.01 1.05 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.51 6.61 -51.93 -0.34 1.17 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.18 2.02 6.47 -52.48 -0.34 1.68 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.26 7.78 -51.93 -0.40 0.85 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.30 6.37 -51.93 -0.33 0.97 16 43 H 0.39 10.04 6.09 -40.82 -0.25 9.79 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 1.53 6.59 -51.93 -0.34 1.19 16 46 H 0.05 0.67 7.71 -51.92 -0.40 0.27 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -35.61 377.54 -6.46 -42.07 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.03 Total: 8.96 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 0.13 Total: 10.61 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: 0.06 Total: -65.01 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.29 Total: -19.46 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.61 -6.46 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.881 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds