Wall clock time and date at job start Tue Mar 31 2020 14:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00402 * 2 1 4 4 C 1.50697 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.30446 * 125.99079 * 90.01947 * 4 3 2 6 6 N 1.39935 * 108.90076 * 180.02562 * 5 4 3 7 7 C 1.46498 * 125.75446 * 180.02562 * 6 5 4 8 8 C 1.34254 * 108.49036 * 0.02562 * 6 5 4 9 9 C 1.38054 * 107.41897 * 359.73230 * 8 6 5 10 10 C 1.47420 * 126.41348 * 180.25909 * 9 8 6 11 11 O 1.21605 * 120.00017 * 145.88111 * 10 9 8 12 12 N 1.34773 * 120.00411 * 325.87393 * 10 9 8 13 13 C 1.47022 * 125.64915 * 184.10048 * 12 10 9 14 14 C 1.54343 * 107.26419 * 178.85175 * 13 12 10 15 15 H 1.09001 * 110.51524 * 96.45458 * 14 13 12 16 16 C 1.52997 * 110.99915 * 219.60394 * 14 13 12 17 17 C 1.55153 * 103.01891 * 338.14230 * 14 13 12 18 18 H 1.09001 * 111.00512 * 153.38458 * 17 14 13 19 19 N 1.46506 * 111.00552 * 277.23215 * 17 14 13 20 20 C 1.36942 * 120.00042 * 198.65373 * 19 17 14 21 21 H 1.08003 * 119.99774 * 359.97438 * 20 19 17 22 22 C 1.38807 * 119.99853 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00004 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47418 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47266 * 120.00260 * 24 22 20 27 27 H 1.48511 * 109.46880 * 239.99777 * 24 22 20 28 28 C 1.47421 * 125.64695 * 4.41024 * 12 10 9 29 29 H 1.09001 * 109.46940 * 60.00063 * 1 2 3 30 30 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47409 * 300.00192 * 1 2 3 32 32 H 1.09000 * 109.47030 * 59.99530 * 3 2 1 33 33 H 1.09002 * 109.47060 * 299.99861 * 3 2 1 34 34 H 1.08997 * 109.47024 * 89.97615 * 7 6 5 35 35 H 1.09000 * 109.47033 * 209.98101 * 7 6 5 36 36 H 1.09002 * 109.46867 * 329.97824 * 7 6 5 37 37 H 1.08003 * 126.29061 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.88676 * 298.39460 * 13 12 10 39 39 H 1.09001 * 109.87945 * 59.56716 * 13 12 10 40 40 H 1.09003 * 109.46782 * 173.78177 * 16 14 13 41 41 H 1.08996 * 109.47448 * 293.77795 * 16 14 13 42 42 H 1.09000 * 109.47332 * 53.78117 * 16 14 13 43 43 H 0.96997 * 120.00045 * 18.64872 * 19 17 14 44 44 H 0.97008 * 120.00123 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.37035 * 322.93323 * 28 12 10 46 46 H 1.09008 * 110.36378 * 85.25512 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2772 1.1260 -1.0545 6 7 5.6104 1.0197 -0.6427 7 6 6.7747 0.9280 -1.5270 8 6 5.6424 1.0160 0.6995 9 6 4.3401 1.1253 1.1442 10 6 3.8958 1.1670 2.5493 11 8 2.9330 1.8404 2.8628 12 7 4.5565 0.4586 3.4863 13 6 4.1732 0.3421 4.9009 14 6 5.2020 -0.5873 5.5792 15 1 5.9799 -0.0024 6.0699 16 6 4.5198 -1.5236 6.5786 17 6 5.7877 -1.3893 4.3872 18 1 6.8010 -1.7276 4.6041 19 7 4.9226 -2.5192 4.0387 20 6 5.4183 -3.5575 3.2961 21 1 6.4468 -3.5433 2.9669 22 6 4.5987 -4.6282 2.9664 23 7 3.3455 -4.6457 3.3680 24 14 5.2750 -6.0449 1.9540 25 1 6.7011 -5.7861 1.6310 26 1 5.1638 -7.3057 2.7306 27 1 4.4974 -6.1689 0.6948 28 6 5.7869 -0.3224 3.2641 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 7.1446 1.9297 -1.7458 35 1 7.5584 0.3502 -1.0371 36 1 6.4874 0.4359 -2.4562 37 1 6.5253 0.9457 1.3176 38 1 4.1913 1.3247 5.3721 39 1 3.1762 -0.0912 4.9803 40 1 5.2473 -2.2402 6.9600 41 1 4.1164 -0.9402 7.4061 42 1 3.7099 -2.0577 6.0817 43 1 3.9988 -2.5318 4.3341 44 1 2.7728 -5.3942 3.1379 45 1 5.7604 -0.8018 2.2854 46 1 6.6641 0.3190 3.3496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054819956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:00 Heat of formation + Delta-G solvation = -2.656197 kcal Electronic energy + Delta-G solvation = -28677.430462 eV Core-core repulsion = 24796.806349 eV Total energy + Delta-G solvation = -3880.624113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53423 -40.73397 -38.95253 -38.66897 -35.61139 -34.62236 -33.97166 -32.31930 -31.42891 -29.95875 -29.32323 -27.81639 -27.16315 -26.00913 -25.73806 -23.97893 -22.48916 -21.56476 -20.59157 -20.27171 -19.32037 -18.07943 -17.62442 -17.46421 -17.19086 -16.81320 -16.52225 -16.32453 -16.25379 -15.95077 -15.62454 -15.29756 -14.88953 -14.58555 -14.22079 -13.90319 -13.78759 -13.57252 -13.48463 -13.30940 -13.25922 -13.15078 -12.96584 -12.88087 -12.80048 -12.40407 -12.25013 -12.07869 -12.02408 -11.91023 -11.43769 -11.32276 -11.06905 -10.94077 -10.67076 -10.52674 -9.79150 -9.51127 -8.88927 -7.89121 -5.15804 0.55777 0.88341 1.39014 1.46455 1.47943 1.56588 1.94654 2.39381 2.58468 2.95467 3.36213 3.43148 3.60720 3.65851 3.92240 3.97550 3.99695 4.07905 4.17082 4.20099 4.31488 4.40762 4.44026 4.46447 4.47651 4.49520 4.69218 4.69800 4.70764 4.75870 4.77170 4.79482 4.91101 5.00375 5.06387 5.21267 5.26032 5.32350 5.49644 5.56341 5.64087 5.87356 6.09604 6.32158 6.42700 6.63916 7.23165 7.39278 8.17209 8.37689 9.34897 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008804 B = 0.005202 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.515924 B = 5381.755052 C = 6045.403034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.140 3.860 4 C 0.101 3.899 5 N -0.304 5.304 6 N -0.353 5.353 7 C 0.085 3.915 8 C 0.118 3.882 9 C -0.297 4.297 10 C 0.603 3.397 11 O -0.591 6.591 12 N -0.600 5.600 13 C 0.117 3.883 14 C -0.096 4.096 15 H 0.124 0.876 16 C -0.127 4.127 17 C 0.158 3.842 18 H 0.090 0.910 19 N -0.722 5.722 20 C -0.225 4.225 21 H 0.086 0.914 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.962 3.038 25 H -0.257 1.257 26 H -0.297 1.297 27 H -0.308 1.308 28 C 0.072 3.928 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.223 0.777 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.371 0.629 44 H 0.245 0.755 45 H 0.061 0.939 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 14.572 -3.899 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.336 6.336 3 C 0.062 3.938 4 C -0.065 4.065 5 N -0.129 5.129 6 N -0.132 5.132 7 C -0.053 4.053 8 C -0.034 4.034 9 C -0.312 4.312 10 C 0.394 3.606 11 O -0.473 6.473 12 N -0.331 5.331 13 C -0.005 4.005 14 C -0.116 4.116 15 H 0.142 0.858 16 C -0.185 4.185 17 C 0.048 3.952 18 H 0.108 0.892 19 N -0.361 5.361 20 C -0.357 4.357 21 H 0.104 0.896 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.793 3.207 25 H -0.181 1.181 26 H -0.225 1.225 27 H -0.236 1.236 28 C -0.054 4.054 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.240 0.760 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.204 0.796 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.883 14.651 -5.271 17.926 hybrid contribution -1.010 -1.029 0.253 1.464 sum 7.872 13.622 -5.018 16.514 Atomic orbital electron populations 1.22929 0.78716 1.03696 1.01304 1.87939 1.22193 1.27771 1.95666 1.20719 0.85271 0.85341 1.02489 1.22052 0.96103 0.98571 0.89816 1.76993 0.88076 1.25237 1.22546 1.48698 1.06218 1.52760 1.05518 1.22491 0.82680 1.05717 0.94460 1.23619 0.98862 0.95607 0.85328 1.20178 0.94152 1.23387 0.93485 1.17138 0.81459 0.78171 0.83870 1.90647 1.29874 1.44472 1.82335 1.48204 1.27841 1.47765 1.09286 1.21995 0.98020 0.99883 0.80635 1.22495 0.97737 0.95805 0.95539 0.85835 1.21527 1.00206 0.98697 0.98048 1.21725 0.95357 0.86442 0.91706 0.89204 1.42588 1.11394 1.19356 1.62784 1.19670 0.95874 0.96756 1.23441 0.89594 1.25478 0.96248 1.01727 1.03561 1.69839 1.06912 1.32668 1.52721 0.85226 0.78160 0.79810 0.77528 1.18076 1.22454 1.23630 1.23511 0.86065 0.93918 1.01856 0.91378 0.89195 0.93511 0.90731 0.89812 0.87739 0.85921 0.88775 0.76030 0.90377 0.94794 0.92140 0.91100 0.95284 0.79559 0.94599 0.92047 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.42 -16.50 10.69 -148.98 -1.59 -18.09 16 3 C 0.14 4.94 6.30 71.23 0.45 5.39 16 4 C 0.10 3.75 6.89 43.51 0.30 4.05 16 5 N -0.30 -10.23 12.50 -46.68 -0.58 -10.81 16 6 N -0.35 -8.98 3.98 -367.78 -1.46 -10.44 16 7 C 0.08 1.10 11.44 127.77 1.46 2.56 16 8 C 0.12 3.09 9.55 84.28 0.80 3.89 16 9 C -0.30 -10.61 5.67 -20.15 -0.11 -10.72 16 10 C 0.60 23.78 7.67 86.66 0.66 24.45 16 11 O -0.59 -26.41 15.83 -4.05 -0.06 -26.47 16 12 N -0.60 -20.92 3.33 -815.64 -2.71 -23.63 16 13 C 0.12 3.81 6.48 86.74 0.56 4.37 16 14 C -0.10 -2.67 3.40 -9.60 -0.03 -2.71 16 15 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 16 C -0.13 -3.84 8.73 71.98 0.63 -3.21 16 17 C 0.16 5.26 3.44 46.38 0.16 5.42 16 18 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 19 N -0.72 -33.79 4.74 -316.37 -1.50 -35.29 16 20 C -0.23 -11.73 9.98 84.03 0.84 -10.89 16 21 H 0.09 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 23 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 24 Si 0.96 45.97 29.55 68.60 2.03 48.00 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 28 C 0.07 2.13 5.05 86.86 0.44 2.57 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 2.75 6.61 -2.39 -0.02 2.74 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.22 3.79 6.47 -2.91 -0.02 3.77 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.03 1.32 7.78 -2.39 -0.02 1.30 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.03 1.11 6.37 -2.39 -0.02 1.09 16 43 H 0.37 19.83 6.09 -92.71 -0.56 19.27 16 44 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 45 H 0.06 2.12 6.59 -2.39 -0.02 2.10 16 46 H 0.11 2.07 7.71 -2.38 -0.02 2.06 16 Total: -1.00 -82.60 377.54 2.70 -79.90 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.43 Total: 33.60 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 7.87 Total: 23.30 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -5.98 Total: -140.24 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.66 Total: -44.56 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -82.60 2.70 -79.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054819956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.244 kcal (2) G-P(sol) polarization free energy of solvation -82.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds