Wall clock time and date at job start Tue Mar 31 2020 14:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21499 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.48333 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.42271 * 126.93497 * 179.97438 * 8 6 5 10 10 C 1.35322 * 103.91813 * 180.02562 * 9 8 6 11 11 C 1.50700 * 126.66518 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.47500 * 89.99585 * 11 10 9 13 13 C 1.46899 * 110.99860 * 66.04577 * 12 11 10 14 14 C 1.46899 * 111.00031 * 189.99875 * 12 11 10 15 15 O 1.34010 * 106.67161 * 359.97438 * 10 9 8 16 16 N 1.20911 * 111.84432 * 359.70719 * 15 10 9 17 17 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 18 18 C 1.54371 * 107.28954 * 1.09430 * 17 5 4 19 19 H 1.09000 * 110.69938 * 263.79651 * 18 17 5 20 20 N 1.46495 * 110.75708 * 140.50781 * 18 17 5 21 21 C 1.36938 * 120.00366 * 91.48243 * 20 18 17 22 22 H 1.08001 * 119.99728 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00190 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46842 * 59.99957 * 25 23 21 27 27 H 1.48502 * 109.47312 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47304 * 300.00508 * 25 23 21 29 29 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 32 32 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 33 33 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 34 34 H 1.07999 * 128.04338 * 0.02562 * 9 8 6 35 35 H 1.08998 * 109.46950 * 210.00012 * 11 10 9 36 36 H 1.09001 * 109.46959 * 329.99338 * 11 10 9 37 37 H 1.09004 * 109.47224 * 59.99638 * 13 12 11 38 38 H 1.08993 * 109.47557 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.47150 * 300.00523 * 13 12 11 40 40 H 1.09002 * 109.46777 * 60.00113 * 14 12 11 41 41 H 1.09000 * 109.46564 * 179.97438 * 14 12 11 42 42 H 1.09002 * 109.47210 * 300.00089 * 14 12 11 43 43 H 1.09002 * 109.88343 * 120.47841 * 17 5 4 44 44 H 1.09000 * 109.88049 * 241.48392 * 17 5 4 45 45 H 0.96999 * 120.00014 * 271.47886 * 20 18 17 46 46 H 0.97000 * 119.99593 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3015 -1.4964 2.7988 8 6 5.7511 -1.9851 1.0272 9 6 6.9202 -2.3504 1.7510 10 6 7.8198 -2.6510 0.7859 11 6 9.2422 -3.1046 0.9913 12 7 9.2815 -4.5708 1.0747 13 6 8.9015 -5.1813 -0.2063 14 6 10.6048 -5.0381 1.5087 15 8 7.1999 -2.4681 -0.3881 16 7 6.0557 -2.1060 -0.2410 17 6 3.4674 -1.2743 -0.6957 18 6 2.0861 -0.8073 -1.2026 19 1 1.4468 -1.6625 -1.4217 20 7 2.2286 0.0507 -2.3815 21 6 2.1999 -0.4985 -3.6356 22 1 2.0726 -1.5643 -3.7556 23 6 2.3344 0.3145 -4.7526 24 7 2.4900 1.6133 -4.6063 25 14 2.2959 -0.4347 -6.4633 26 1 0.9961 -1.1215 -6.6738 27 1 2.4596 0.6378 -7.4773 28 1 3.4019 -1.4163 -6.5988 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3634 0.5030 -0.8962 32 1 2.1560 -0.1714 2.0837 33 1 1.4520 -1.6700 1.4029 34 1 7.0577 -2.3807 2.8217 35 1 9.8543 -2.7718 0.1531 36 1 9.6297 -2.6776 1.9163 37 1 9.5939 -4.8566 -0.9830 38 1 8.9386 -6.2669 -0.1166 39 1 7.8897 -4.8731 -0.4697 40 1 10.8312 -4.6259 2.4920 41 1 10.6059 -6.1268 1.5624 42 1 11.3589 -4.7084 0.7941 43 1 4.2426 -0.6000 -1.0599 44 1 3.6678 -2.2891 -1.0394 45 1 2.3432 1.0078 -2.2738 46 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054833084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:40 Heat of formation + Delta-G solvation = 57.103850 kcal Electronic energy + Delta-G solvation = -27507.437320 eV Core-core repulsion = 23629.404597 eV Total energy + Delta-G solvation = -3878.032723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.07990 -39.78774 -37.90413 -37.59191 -34.15981 -33.97532 -32.80628 -32.08590 -30.69994 -27.96450 -27.68252 -27.56091 -26.81010 -24.32481 -23.67374 -23.10418 -22.16685 -21.18959 -19.97630 -19.03823 -17.89473 -17.38057 -17.13926 -16.78542 -15.95332 -15.68031 -15.61522 -15.40384 -14.95422 -14.67018 -14.12629 -13.83592 -13.55738 -13.25056 -13.13735 -13.09912 -12.74568 -12.63953 -12.56791 -12.43275 -12.15954 -12.12431 -12.00488 -11.56707 -11.34621 -11.12504 -10.98750 -10.70506 -10.61979 -10.42268 -10.28308 -10.15469 -9.96721 -9.72307 -9.64228 -8.98590 -8.83920 -8.40663 -7.08520 -5.83544 -3.14224 1.15842 1.61613 2.79001 3.00805 3.28400 3.41235 3.45982 3.46589 3.65066 4.00265 4.24603 4.53667 4.67040 4.77886 4.85038 4.94104 5.01088 5.03464 5.13124 5.20607 5.22058 5.24468 5.31396 5.40799 5.46051 5.57382 5.62867 5.66134 5.76147 5.81322 5.84463 5.92100 5.99217 6.20463 6.26367 6.42119 6.44257 6.50073 6.51363 6.55705 6.61312 6.88505 7.61773 7.66200 7.98217 8.23012 8.33720 9.45640 9.98746 10.33995 11.38359 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.003487 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.978594 B = 8027.515518 C =10081.239122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.607 3.393 7 O -0.540 6.540 8 C -0.025 4.025 9 C -0.158 4.158 10 C -0.041 4.041 11 C 0.137 3.863 12 N -0.545 5.545 13 C 0.018 3.982 14 C 0.025 3.975 15 O 0.123 5.877 16 N -0.309 5.309 17 C 0.076 3.924 18 C 0.177 3.823 19 H 0.069 0.931 20 N -0.709 5.709 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.179 0.821 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -10.281 13.226 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.329 5.329 6 C 0.394 3.606 7 O -0.417 6.417 8 C -0.184 4.184 9 C -0.181 4.181 10 C -0.104 4.104 11 C 0.009 3.991 12 N -0.270 5.270 13 C -0.130 4.130 14 C -0.123 4.123 15 O 0.046 5.954 16 N -0.008 5.008 17 C -0.050 4.050 18 C 0.065 3.935 19 H 0.087 0.913 20 N -0.348 5.348 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.197 0.803 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.221 0.779 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.091 -10.272 12.945 19.902 hybrid contribution 0.993 0.089 -0.871 1.324 sum 12.085 -10.182 12.074 19.887 Atomic orbital electron populations 1.21597 0.93659 1.01722 1.02000 1.22679 0.96483 0.99832 0.94545 0.89766 1.22351 0.81960 0.98379 0.98086 1.48392 1.11703 1.64049 1.08767 1.16504 0.81019 0.77910 0.85202 1.90758 1.82352 1.55012 1.13546 1.23431 0.98014 1.07241 0.89742 1.22335 0.90358 1.03547 1.01893 1.24143 0.97875 1.03919 0.84494 1.20508 0.86843 0.88500 1.03254 1.61987 1.28843 1.05358 1.30796 1.22491 1.01458 1.00154 0.88862 1.22399 0.87911 1.01478 1.00500 1.84848 1.17927 1.61070 1.31596 1.74473 0.94926 1.12429 1.18977 1.23491 1.03129 1.01944 0.76393 1.21277 0.91523 0.93813 0.86931 0.91266 1.42330 1.86215 1.06169 1.00101 1.19201 1.42858 0.92559 0.83170 0.91040 1.24754 1.02281 0.95432 0.97961 1.69654 1.56002 1.02833 1.29254 0.86263 0.77911 0.77838 0.84135 1.21154 1.21665 1.21132 0.93144 0.92794 0.91250 0.90597 0.91187 0.80344 0.91906 0.87181 0.94798 0.90891 0.91065 0.90928 0.90807 0.95135 0.90362 0.91879 0.77874 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.29 37.16 0.35 -1.54 16 2 C -0.12 -1.87 3.27 -88.48 -0.29 -2.16 16 3 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 4 C 0.11 1.78 6.38 -2.53 -0.02 1.76 16 5 N -0.60 -10.51 3.33 -171.43 -0.57 -11.09 16 6 C 0.61 10.98 7.88 -12.11 -0.10 10.88 16 7 O -0.54 -10.52 17.21 5.37 0.09 -10.43 16 8 C -0.03 -0.42 7.03 -82.53 -0.58 -1.00 16 9 C -0.16 -2.05 10.92 -39.07 -0.43 -2.48 16 10 C -0.04 -0.47 6.03 -35.35 -0.21 -0.68 16 11 C 0.14 1.07 5.52 -4.97 -0.03 1.04 16 12 N -0.55 -4.42 5.01 -252.72 -1.27 -5.69 16 13 C 0.02 0.15 9.37 60.06 0.56 0.71 16 14 C 0.02 0.14 9.57 60.06 0.57 0.71 16 15 O 0.12 1.75 10.60 17.26 0.18 1.93 16 16 N -0.31 -5.18 9.73 33.29 0.32 -4.85 16 17 C 0.08 1.45 5.32 -3.04 -0.02 1.43 16 18 C 0.18 3.44 3.08 -66.07 -0.20 3.24 16 19 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 20 N -0.71 -17.09 5.15 -51.63 -0.27 -17.36 16 21 C -0.25 -6.63 9.96 -15.06 -0.15 -6.78 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 25 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 34 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.07 0.72 6.83 -51.93 -0.35 0.37 16 40 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 41 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 42 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 44 H 0.06 1.22 7.78 -51.93 -0.40 0.81 16 45 H 0.39 9.98 7.76 -40.82 -0.32 9.67 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -31.85 381.52 -8.00 -39.85 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.32 Total: 6.81 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.63 Total: 4.82 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.05 Total: -65.71 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.28 Total: -8.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.85 -8.00 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.955 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds