Wall clock time and date at job start Tue Mar 31 2020 14:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88710 * 2 1 4 4 C 1.54904 * 111.00855 * 123.88740 * 2 1 3 5 5 N 1.47420 * 104.83635 * 155.08338 * 4 2 1 6 6 C 1.34774 * 125.64951 * 155.83786 * 5 4 2 7 7 O 1.21499 * 120.00191 * 359.97438 * 6 5 4 8 8 C 1.48333 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.42271 * 126.93497 * 179.97438 * 8 6 5 10 10 C 1.35322 * 103.91813 * 180.02562 * 9 8 6 11 11 C 1.50700 * 126.66518 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.47500 * 89.99585 * 11 10 9 13 13 C 1.46899 * 110.99860 * 66.04577 * 12 11 10 14 14 C 1.46899 * 111.00031 * 189.99875 * 12 11 10 15 15 O 1.34010 * 106.67161 * 359.97438 * 10 9 8 16 16 N 1.20911 * 111.84432 * 359.70719 * 15 10 9 17 17 C 1.47018 * 108.70193 * 335.87134 * 5 4 2 18 18 C 1.54371 * 107.28954 * 1.09430 * 17 5 4 19 19 H 1.09000 * 110.69938 * 263.79651 * 18 17 5 20 20 N 1.46495 * 110.75708 * 140.50781 * 18 17 5 21 21 C 1.36938 * 120.00366 * 91.48243 * 20 18 17 22 22 H 1.08001 * 119.99728 * 359.97438 * 21 20 18 23 23 C 1.38811 * 120.00190 * 179.97438 * 21 20 18 24 24 N 1.31622 * 119.99900 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00077 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46842 * 59.99957 * 25 23 21 27 27 H 1.48502 * 109.47312 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47304 * 300.00508 * 25 23 21 29 29 H 1.09002 * 109.47153 * 300.69429 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.69620 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.69601 * 1 2 3 32 32 H 1.09004 * 110.36628 * 273.92431 * 4 2 1 33 33 H 1.09001 * 110.36928 * 36.24245 * 4 2 1 34 34 H 1.07999 * 128.04338 * 0.02562 * 9 8 6 35 35 H 1.08998 * 109.46950 * 210.00012 * 11 10 9 36 36 H 1.09001 * 109.46959 * 329.99338 * 11 10 9 37 37 H 1.09004 * 109.47224 * 59.99638 * 13 12 11 38 38 H 1.08993 * 109.47557 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.47150 * 300.00523 * 13 12 11 40 40 H 1.09002 * 109.46777 * 60.00113 * 14 12 11 41 41 H 1.09000 * 109.46564 * 179.97438 * 14 12 11 42 42 H 1.09002 * 109.47210 * 300.00089 * 14 12 11 43 43 H 1.09002 * 109.88343 * 120.47841 * 17 5 4 44 44 H 1.09000 * 109.88049 * 241.48392 * 17 5 4 45 45 H 0.96999 * 120.00014 * 271.47886 * 20 18 17 46 46 H 0.97000 * 119.99593 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 1.2004 5 7 3.4271 -1.2428 0.7736 6 6 4.4481 -1.5598 1.5943 7 8 4.3015 -1.4964 2.7988 8 6 5.7511 -1.9851 1.0272 9 6 6.9202 -2.3504 1.7510 10 6 7.8198 -2.6510 0.7859 11 6 9.2422 -3.1046 0.9913 12 7 9.2815 -4.5708 1.0747 13 6 8.9015 -5.1813 -0.2063 14 6 10.6048 -5.0381 1.5087 15 8 7.1999 -2.4681 -0.3881 16 7 6.0557 -2.1060 -0.2410 17 6 3.4674 -1.2743 -0.6957 18 6 2.0861 -0.8073 -1.2026 19 1 1.4468 -1.6625 -1.4217 20 7 2.2286 0.0507 -2.3815 21 6 2.1999 -0.4985 -3.6356 22 1 2.0726 -1.5643 -3.7556 23 6 2.3344 0.3145 -4.7526 24 7 2.4900 1.6133 -4.6063 25 14 2.2959 -0.4347 -6.4633 26 1 0.9961 -1.1215 -6.6738 27 1 2.4596 0.6378 -7.4773 28 1 3.4019 -1.4163 -6.5988 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3634 0.5030 -0.8962 32 1 2.1560 -0.1714 2.0837 33 1 1.4520 -1.6700 1.4029 34 1 7.0577 -2.3807 2.8217 35 1 9.8543 -2.7718 0.1531 36 1 9.6297 -2.6776 1.9163 37 1 9.5939 -4.8566 -0.9830 38 1 8.9386 -6.2669 -0.1166 39 1 7.8897 -4.8731 -0.4697 40 1 10.8312 -4.6259 2.4920 41 1 10.6059 -6.1268 1.5624 42 1 11.3589 -4.7084 0.7941 43 1 4.2426 -0.6000 -1.0599 44 1 3.6678 -2.2891 -1.0394 45 1 2.3432 1.0078 -2.2738 46 1 2.5843 2.1814 -5.3869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054833084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:39 Heat of formation + Delta-G solvation = 35.054723 kcal Electronic energy + Delta-G solvation = -27508.393442 eV Core-core repulsion = 23629.404597 eV Total energy + Delta-G solvation = -3878.988845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.22881 -41.22452 -39.08186 -38.51025 -35.95025 -35.19784 -34.08740 -33.29978 -32.50152 -29.26664 -28.57678 -28.35395 -28.08040 -26.02048 -25.14784 -24.06896 -23.15451 -22.53045 -21.46520 -20.28453 -19.15072 -19.03482 -18.46102 -18.09903 -17.36944 -16.88886 -16.42917 -16.25198 -16.19812 -15.88795 -15.56616 -15.39859 -14.88255 -14.70113 -14.65478 -14.16748 -13.88106 -13.81249 -13.55499 -13.41854 -13.10495 -13.03750 -12.90299 -12.83636 -12.73316 -12.55765 -12.38231 -12.24329 -12.19246 -12.07856 -11.74594 -11.61825 -11.59013 -11.40963 -10.95557 -10.65581 -9.86295 -9.40820 -9.09873 -7.96223 -5.26589 -0.01017 0.56565 1.47769 1.50268 1.55959 1.60221 1.93379 1.95736 2.54561 2.76116 3.05333 3.24961 3.34556 3.56230 3.75717 3.81072 3.85071 3.99890 4.07947 4.17550 4.26985 4.28331 4.36642 4.40318 4.55928 4.56062 4.58980 4.61149 4.73184 4.77281 4.82414 4.85384 4.88092 5.01070 5.02625 5.09799 5.10624 5.13219 5.29470 5.45394 5.51557 5.86886 5.98381 6.17871 6.24533 6.69495 7.01782 7.31505 8.01301 8.26386 9.26405 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.003487 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.978594 B = 8027.515518 C =10081.239122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.605 3.395 7 O -0.556 6.556 8 C -0.051 4.051 9 C -0.163 4.163 10 C -0.021 4.021 11 C 0.137 3.863 12 N -0.560 5.560 13 C 0.019 3.981 14 C 0.025 3.975 15 O 0.123 5.877 16 N -0.341 5.341 17 C 0.097 3.903 18 C 0.172 3.828 19 H 0.074 0.926 20 N -0.719 5.719 21 C -0.244 4.244 22 H 0.077 0.923 23 C -0.068 4.068 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.296 1.296 28 H -0.280 1.280 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.198 0.802 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.375 0.625 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.143 -11.750 14.393 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.332 5.332 6 C 0.392 3.608 7 O -0.434 6.434 8 C -0.208 4.208 9 C -0.186 4.186 10 C -0.084 4.084 11 C 0.009 3.991 12 N -0.285 5.285 13 C -0.129 4.129 14 C -0.122 4.122 15 O 0.045 5.955 16 N -0.040 5.040 17 C -0.029 4.029 18 C 0.061 3.939 19 H 0.092 0.908 20 N -0.357 5.357 21 C -0.376 4.376 22 H 0.095 0.905 23 C -0.261 4.261 24 N -0.616 5.616 25 Si 0.799 3.201 26 H -0.201 1.201 27 H -0.223 1.223 28 H -0.206 1.206 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.215 0.785 35 H 0.095 0.905 36 H 0.156 0.844 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.208 0.792 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.985 -11.782 14.148 21.969 hybrid contribution 0.805 0.473 -1.141 1.474 sum 12.790 -11.309 13.007 21.463 Atomic orbital electron populations 1.21554 0.91711 1.02792 1.02256 1.22577 0.97973 0.98710 0.93122 0.90985 1.22480 0.81143 0.99152 0.97744 1.48428 1.12635 1.64143 1.07978 1.16742 0.81523 0.77459 0.85048 1.90733 1.82806 1.55884 1.14020 1.23497 0.98385 1.08567 0.90399 1.22582 0.89343 1.03741 1.02963 1.24835 0.98951 1.01683 0.82957 1.20786 0.84325 0.88737 1.05242 1.61977 1.30671 1.05287 1.30540 1.22461 1.00208 1.00788 0.89473 1.22464 0.86614 1.01813 1.01289 1.84803 1.17305 1.60496 1.32914 1.74468 0.96214 1.13789 1.19535 1.23017 1.01723 1.00723 0.77439 1.21462 0.91864 0.93906 0.86680 0.90799 1.42426 1.86413 1.06058 1.00801 1.19566 1.40872 0.92821 0.84322 0.90476 1.25521 1.03189 0.95870 1.01528 1.69807 1.58087 1.04064 1.29691 0.85268 0.78212 0.76866 0.79754 1.20127 1.22271 1.20633 0.90480 0.91388 0.93308 0.89654 0.89142 0.78486 0.90520 0.84423 0.94062 0.90021 0.93519 0.89654 0.90417 0.94220 0.93085 0.92471 0.79218 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.29 71.98 0.67 -2.70 16 2 C -0.10 -3.31 3.27 -9.40 -0.03 -3.34 16 3 H 0.07 2.49 8.01 -2.39 -0.02 2.47 16 4 C 0.12 3.44 6.38 86.85 0.55 4.00 16 5 N -0.60 -21.05 3.33 -814.57 -2.71 -23.76 16 6 C 0.60 21.83 7.88 86.93 0.68 22.52 16 7 O -0.56 -21.34 17.21 -3.71 -0.06 -21.41 16 8 C -0.05 -1.68 7.03 42.96 0.30 -1.38 16 9 C -0.16 -4.07 10.92 22.60 0.25 -3.83 16 10 C -0.02 -0.45 6.03 25.01 0.15 -0.30 16 11 C 0.14 1.78 5.52 85.56 0.47 2.25 16 12 N -0.56 -7.78 5.01 -953.46 -4.78 -12.55 16 13 C 0.02 0.29 9.37 127.69 1.20 1.48 16 14 C 0.03 0.20 9.57 127.69 1.22 1.43 16 15 O 0.12 3.49 10.60 71.93 0.76 4.26 16 16 N -0.34 -11.66 9.73 -49.51 -0.48 -12.14 16 17 C 0.10 3.76 5.32 86.75 0.46 4.22 16 18 C 0.17 6.69 3.08 46.20 0.14 6.84 16 19 H 0.07 2.83 7.99 -2.39 -0.02 2.81 16 20 N -0.72 -35.36 5.15 -317.26 -1.63 -36.99 16 21 C -0.24 -13.24 9.96 84.03 0.84 -12.40 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 24 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 25 Si 0.97 45.61 29.55 68.60 2.03 47.63 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.63 8.13 -2.39 -0.02 1.62 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.09 2.41 8.04 -2.39 -0.02 2.39 16 33 H 0.09 2.35 8.03 -2.39 -0.02 2.33 16 34 H 0.20 4.03 8.06 -2.91 -0.02 4.00 16 35 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.14 1.07 8.06 -2.39 -0.02 1.05 16 37 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 39 H 0.05 0.93 6.83 -2.38 -0.02 0.91 16 40 H 0.08 0.49 8.12 -2.39 -0.02 0.47 16 41 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 42 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 2.26 7.58 -2.39 -0.02 2.25 16 44 H 0.06 2.26 7.78 -2.39 -0.02 2.24 16 45 H 0.38 20.02 7.76 -92.71 -0.72 19.30 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.70 381.52 1.04 -68.66 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.26 Total: 29.02 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 7.37 Total: 15.39 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -9.32 Total: -143.55 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.70 Total: -17.15 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.70 1.04 -68.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.712 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds