Wall clock time and date at job start Tue Mar 31 2020 14:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.64422 * 2 1 4 4 C 1.54324 * 110.71960 * 123.14465 * 2 1 3 5 5 N 1.47020 * 107.27311 * 140.73339 * 4 2 1 6 6 C 1.34770 * 125.65199 * 181.02179 * 5 4 2 7 7 O 1.21499 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.48329 * 120.00303 * 180.02562 * 6 5 4 9 9 C 1.42276 * 126.94089 * 180.02562 * 8 6 5 10 10 C 1.35310 * 103.92527 * 180.02562 * 9 8 6 11 11 C 1.50692 * 126.66809 * 179.97438 * 10 9 8 12 12 N 1.46905 * 109.47230 * 90.00067 * 11 10 9 13 13 C 1.46900 * 110.99601 * 66.05125 * 12 11 10 14 14 C 1.46902 * 111.00122 * 189.99937 * 12 11 10 15 15 O 1.34015 * 106.66765 * 0.02562 * 10 9 8 16 16 N 1.20913 * 111.84615 * 359.97438 * 15 10 9 17 17 C 1.47430 * 108.70313 * 1.28522 * 5 4 2 18 18 C 1.55131 * 104.72161 * 335.55529 * 17 5 4 19 19 H 1.09003 * 110.90613 * 155.27226 * 18 17 5 20 20 N 1.46497 * 111.19256 * 279.19191 * 18 17 5 21 21 C 1.36942 * 119.99623 * 267.18959 * 20 18 17 22 22 H 1.07993 * 120.00055 * 359.97438 * 21 20 18 23 23 C 1.38820 * 119.99935 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99852 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00160 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47609 * 89.99425 * 25 23 21 27 27 H 1.48504 * 109.47116 * 210.00078 * 25 23 21 28 28 H 1.48507 * 109.46795 * 329.99581 * 25 23 21 29 29 H 1.09003 * 109.47322 * 298.31319 * 1 2 3 30 30 H 1.09003 * 109.47439 * 58.31065 * 1 2 3 31 31 H 1.08997 * 109.47508 * 178.31085 * 1 2 3 32 32 H 1.08997 * 109.88018 * 21.31279 * 4 2 1 33 33 H 1.09001 * 110.00783 * 260.22283 * 4 2 1 34 34 H 1.08007 * 128.03340 * 0.02562 * 9 8 6 35 35 H 1.08996 * 109.47389 * 210.00223 * 11 10 9 36 36 H 1.09000 * 109.47293 * 330.00234 * 11 10 9 37 37 H 1.09001 * 109.47594 * 59.99763 * 13 12 11 38 38 H 1.09002 * 109.46874 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.46903 * 299.99501 * 13 12 11 40 40 H 1.09002 * 109.46795 * 60.00054 * 14 12 11 41 41 H 1.08999 * 109.47241 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47140 * 300.00279 * 14 12 11 43 43 H 1.09006 * 110.36407 * 94.48221 * 17 5 4 44 44 H 1.09000 * 110.36824 * 216.80700 * 17 5 4 45 45 H 0.97000 * 120.00372 * 87.18546 * 20 18 17 46 46 H 0.97000 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2470 -1.5462 0.7426 6 6 3.9956 -2.3768 1.4950 7 8 3.7206 -2.5499 2.6657 8 6 5.1553 -3.0795 0.8938 9 6 6.0396 -3.9832 1.5463 10 6 6.9133 -4.3409 0.5769 11 6 8.0751 -5.2901 0.7182 12 7 7.6307 -6.6568 0.4137 13 6 7.2462 -6.7829 -0.9985 14 6 8.6654 -7.6379 0.7671 15 8 6.5452 -3.6860 -0.5329 16 7 5.5727 -2.9927 -0.3447 17 6 3.4706 -1.2413 -0.6824 18 6 2.0828 -0.7948 -1.2125 19 1 2.1887 -0.1514 -2.0860 20 7 1.2342 -1.9503 -1.5138 21 6 1.2125 -2.4724 -2.7796 22 1 1.8207 -2.0319 -3.5558 23 6 0.4080 -3.5670 -3.0654 24 7 -0.3335 -4.1034 -2.1195 25 14 0.3790 -4.2795 -4.7918 26 1 1.4226 -5.3290 -4.9119 27 1 -0.9549 -4.8749 -5.0592 28 1 0.6461 -3.2008 -5.7770 29 1 -0.3634 0.4874 0.9047 30 1 -0.3634 0.5399 -0.8745 31 1 -0.3634 -1.0272 -0.0303 32 1 1.3139 -1.4754 1.5780 33 1 2.3706 -0.1012 2.0010 34 1 6.0183 -4.3082 2.5761 35 1 8.8657 -5.0023 0.0253 36 1 8.4546 -5.2505 1.7392 37 1 8.1015 -6.5444 -1.6307 38 1 6.9209 -7.8042 -1.1966 39 1 6.4303 -6.0935 -1.2158 40 1 8.8813 -7.5700 1.8334 41 1 8.3106 -8.6411 0.5310 42 1 9.5721 -7.4304 0.1988 43 1 4.1970 -0.4355 -0.7884 44 1 3.8102 -2.1314 -1.2120 45 1 0.6877 -2.3457 -0.8167 46 1 -0.8954 -4.8685 -2.3190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054833085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:43 Heat of formation + Delta-G solvation = 62.245150 kcal Electronic energy + Delta-G solvation = -28039.634836 eV Core-core repulsion = 24161.825057 eV Total energy + Delta-G solvation = -3877.809779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.97524 -39.70058 -37.80596 -37.56129 -34.01096 -33.81021 -32.69121 -31.97696 -30.45842 -27.85306 -27.77651 -27.58767 -26.65630 -24.12826 -23.71048 -23.03000 -22.22239 -21.39025 -19.25439 -18.99027 -17.79795 -17.51633 -17.20805 -16.55743 -15.83017 -15.58237 -15.52186 -15.25717 -14.85088 -14.54888 -14.13293 -13.81806 -13.65482 -13.13916 -13.01490 -12.94368 -12.66405 -12.65554 -12.45538 -12.16833 -12.05250 -11.94035 -11.87875 -11.64616 -11.16876 -11.08821 -10.90629 -10.70268 -10.42008 -10.29508 -10.24034 -10.01585 -9.89206 -9.63595 -9.53642 -9.01897 -8.72757 -8.27957 -7.01492 -5.80643 -3.10354 1.25917 1.73565 2.89272 3.13759 3.41426 3.45692 3.46784 3.48275 3.75064 4.12064 4.34771 4.55120 4.75156 4.86732 4.93486 5.02093 5.10047 5.12714 5.19644 5.31662 5.33252 5.35235 5.38466 5.50042 5.54938 5.58149 5.66049 5.80021 5.82472 5.90851 5.93891 6.01657 6.21945 6.25066 6.36612 6.39925 6.55534 6.59238 6.60513 6.62473 6.81732 6.96207 7.66950 7.77882 8.09343 8.36827 8.38093 9.48713 10.03498 10.38403 11.41464 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.004299 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.377927 B = 6511.732390 C = 8547.496822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.608 3.392 7 O -0.540 6.540 8 C -0.017 4.017 9 C -0.158 4.158 10 C -0.041 4.041 11 C 0.139 3.861 12 N -0.545 5.545 13 C 0.018 3.982 14 C 0.026 3.974 15 O 0.119 5.881 16 N -0.313 5.313 17 C 0.065 3.935 18 C 0.172 3.828 19 H 0.076 0.924 20 N -0.707 5.707 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.179 0.821 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.387 0.613 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.304 0.728 6.109 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.098 0.902 4 C -0.005 4.005 5 N -0.318 5.318 6 C 0.394 3.606 7 O -0.417 6.417 8 C -0.176 4.176 9 C -0.181 4.181 10 C -0.105 4.105 11 C 0.011 3.989 12 N -0.269 5.269 13 C -0.130 4.130 14 C -0.122 4.122 15 O 0.042 5.958 16 N -0.013 5.013 17 C -0.061 4.061 18 C 0.059 3.941 19 H 0.093 0.907 20 N -0.347 5.347 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.196 0.804 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.273 1.146 5.820 17.321 hybrid contribution 0.590 -0.876 -0.501 1.169 sum 16.863 0.270 5.319 17.685 Atomic orbital electron populations 1.21607 0.93302 1.03475 1.00574 1.22553 0.97224 0.98522 0.95204 0.90204 1.22030 0.87255 0.94422 0.96808 1.48162 1.28573 1.42558 1.12481 1.16450 0.80559 0.78651 0.84898 1.90755 1.70701 1.64593 1.15631 1.23408 1.00676 1.02747 0.90790 1.22337 0.94270 0.99185 1.02299 1.24109 1.00862 0.99521 0.85979 1.20487 0.89900 0.85283 1.03269 1.61970 1.40265 1.02979 1.21721 1.22499 1.00609 1.03340 0.86504 1.22395 0.92482 0.95965 1.01379 1.84815 1.33664 1.42886 1.34401 1.74366 0.98663 1.10706 1.17564 1.23711 1.00901 1.01667 0.79789 1.21406 0.88413 0.89947 0.94362 0.90653 1.42361 1.49519 1.32484 1.10374 1.19239 1.21181 1.09836 0.87350 0.90995 1.24739 0.99422 0.98663 0.97620 1.69662 1.30768 1.25452 1.31763 0.86208 0.76887 0.79061 0.84126 1.21749 1.21771 1.20651 0.93710 0.92231 0.90933 0.91073 0.91951 0.80391 0.92110 0.87273 0.94946 0.90802 0.90878 0.90979 0.90787 0.95269 0.92562 0.88675 0.77796 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.81 37.16 0.33 -1.81 16 2 C -0.11 -1.85 3.40 -88.78 -0.30 -2.15 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.02 6.45 -3.07 -0.02 2.00 16 5 N -0.59 -11.16 3.32 -171.31 -0.57 -11.73 16 6 C 0.61 12.12 7.88 -12.11 -0.10 12.03 16 7 O -0.54 -11.67 17.28 5.37 0.09 -11.58 16 8 C -0.02 -0.31 7.02 -82.53 -0.58 -0.89 16 9 C -0.16 -2.27 10.92 -39.07 -0.43 -2.70 16 10 C -0.04 -0.51 6.03 -35.36 -0.21 -0.73 16 11 C 0.14 1.20 5.52 -4.98 -0.03 1.17 16 12 N -0.54 -5.24 5.01 -252.72 -1.27 -6.50 16 13 C 0.02 0.19 9.37 60.06 0.56 0.75 16 14 C 0.03 0.17 9.57 60.07 0.57 0.75 16 15 O 0.12 1.75 10.61 17.25 0.18 1.93 16 16 N -0.31 -5.44 9.30 33.29 0.31 -5.13 16 17 C 0.07 1.22 5.90 -2.41 -0.01 1.20 16 18 C 0.17 3.31 3.47 -65.66 -0.23 3.08 16 19 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 20 N -0.71 -17.17 4.58 -51.23 -0.23 -17.41 16 21 C -0.25 -6.62 9.96 -15.05 -0.15 -6.77 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 25 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.40 6.36 -51.93 -0.33 1.07 16 32 H 0.07 1.33 7.82 -51.93 -0.41 0.93 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.18 2.24 8.06 -52.48 -0.42 1.82 16 35 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 36 H 0.11 0.70 8.06 -51.93 -0.42 0.28 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.92 6.84 -51.93 -0.35 0.56 16 40 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 41 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 42 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 2.02 6.22 -51.93 -0.32 1.70 16 45 H 0.39 10.18 6.34 -40.82 -0.26 9.92 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -32.78 377.24 -7.91 -40.69 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.13 Total: 8.37 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.69 Total: 5.61 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.04 Total: -67.95 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.28 Total: -9.65 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.78 -7.91 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.938 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds