Wall clock time and date at job start Tue Mar 31 2020 14:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.64422 * 2 1 4 4 C 1.54324 * 110.71960 * 123.14465 * 2 1 3 5 5 N 1.47020 * 107.27311 * 140.73339 * 4 2 1 6 6 C 1.34770 * 125.65199 * 181.02179 * 5 4 2 7 7 O 1.21499 * 119.99855 * 0.02562 * 6 5 4 8 8 C 1.48329 * 120.00303 * 180.02562 * 6 5 4 9 9 C 1.42276 * 126.94089 * 180.02562 * 8 6 5 10 10 C 1.35310 * 103.92527 * 180.02562 * 9 8 6 11 11 C 1.50692 * 126.66809 * 179.97438 * 10 9 8 12 12 N 1.46905 * 109.47230 * 90.00067 * 11 10 9 13 13 C 1.46900 * 110.99601 * 66.05125 * 12 11 10 14 14 C 1.46902 * 111.00122 * 189.99937 * 12 11 10 15 15 O 1.34015 * 106.66765 * 0.02562 * 10 9 8 16 16 N 1.20913 * 111.84615 * 359.97438 * 15 10 9 17 17 C 1.47430 * 108.70313 * 1.28522 * 5 4 2 18 18 C 1.55131 * 104.72161 * 335.55529 * 17 5 4 19 19 H 1.09003 * 110.90613 * 155.27226 * 18 17 5 20 20 N 1.46497 * 111.19256 * 279.19191 * 18 17 5 21 21 C 1.36942 * 119.99623 * 267.18959 * 20 18 17 22 22 H 1.07993 * 120.00055 * 359.97438 * 21 20 18 23 23 C 1.38820 * 119.99935 * 180.02562 * 21 20 18 24 24 N 1.31618 * 119.99852 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00160 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47609 * 89.99425 * 25 23 21 27 27 H 1.48504 * 109.47116 * 210.00078 * 25 23 21 28 28 H 1.48507 * 109.46795 * 329.99581 * 25 23 21 29 29 H 1.09003 * 109.47322 * 298.31319 * 1 2 3 30 30 H 1.09003 * 109.47439 * 58.31065 * 1 2 3 31 31 H 1.08997 * 109.47508 * 178.31085 * 1 2 3 32 32 H 1.08997 * 109.88018 * 21.31279 * 4 2 1 33 33 H 1.09001 * 110.00783 * 260.22283 * 4 2 1 34 34 H 1.08007 * 128.03340 * 0.02562 * 9 8 6 35 35 H 1.08996 * 109.47389 * 210.00223 * 11 10 9 36 36 H 1.09000 * 109.47293 * 330.00234 * 11 10 9 37 37 H 1.09001 * 109.47594 * 59.99763 * 13 12 11 38 38 H 1.09002 * 109.46874 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.46903 * 299.99501 * 13 12 11 40 40 H 1.09002 * 109.46795 * 60.00054 * 14 12 11 41 41 H 1.08999 * 109.47241 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47140 * 300.00279 * 14 12 11 43 43 H 1.09006 * 110.36407 * 94.48221 * 17 5 4 44 44 H 1.09000 * 110.36824 * 216.80700 * 17 5 4 45 45 H 0.97000 * 120.00372 * 87.18546 * 20 18 17 46 46 H 0.97000 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 3.2470 -1.5462 0.7426 6 6 3.9956 -2.3768 1.4950 7 8 3.7206 -2.5499 2.6657 8 6 5.1553 -3.0795 0.8938 9 6 6.0396 -3.9832 1.5463 10 6 6.9133 -4.3409 0.5769 11 6 8.0751 -5.2901 0.7182 12 7 7.6307 -6.6568 0.4137 13 6 7.2462 -6.7829 -0.9985 14 6 8.6654 -7.6379 0.7671 15 8 6.5452 -3.6860 -0.5329 16 7 5.5727 -2.9927 -0.3447 17 6 3.4706 -1.2413 -0.6824 18 6 2.0828 -0.7948 -1.2125 19 1 2.1887 -0.1514 -2.0860 20 7 1.2342 -1.9503 -1.5138 21 6 1.2125 -2.4724 -2.7796 22 1 1.8207 -2.0319 -3.5558 23 6 0.4080 -3.5670 -3.0654 24 7 -0.3335 -4.1034 -2.1195 25 14 0.3790 -4.2795 -4.7918 26 1 1.4226 -5.3290 -4.9119 27 1 -0.9549 -4.8749 -5.0592 28 1 0.6461 -3.2008 -5.7770 29 1 -0.3634 0.4874 0.9047 30 1 -0.3634 0.5399 -0.8745 31 1 -0.3634 -1.0272 -0.0303 32 1 1.3139 -1.4754 1.5780 33 1 2.3706 -0.1012 2.0010 34 1 6.0183 -4.3082 2.5761 35 1 8.8657 -5.0023 0.0253 36 1 8.4546 -5.2505 1.7392 37 1 8.1015 -6.5444 -1.6307 38 1 6.9209 -7.8042 -1.1966 39 1 6.4303 -6.0935 -1.2158 40 1 8.8813 -7.5700 1.8334 41 1 8.3106 -8.6411 0.5310 42 1 9.5721 -7.4304 0.1988 43 1 4.1970 -0.4355 -0.7884 44 1 3.8102 -2.1314 -1.2120 45 1 0.6877 -2.3457 -0.8167 46 1 -0.8954 -4.8685 -2.3190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054833085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:42 Heat of formation + Delta-G solvation = 39.157893 kcal Electronic energy + Delta-G solvation = -28040.635975 eV Core-core repulsion = 24161.825057 eV Total energy + Delta-G solvation = -3878.810918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.20100 -41.20568 -39.11216 -38.51415 -35.77188 -35.16687 -34.05536 -33.27450 -32.26199 -29.46873 -28.58026 -28.35175 -28.04530 -25.88170 -25.28073 -24.11281 -23.34253 -22.63033 -20.73669 -20.32761 -19.40337 -18.99508 -18.45961 -17.97029 -17.35214 -16.77783 -16.44980 -16.25602 -16.22581 -15.80632 -15.73544 -15.41864 -14.82069 -14.71632 -14.54499 -14.19996 -13.82885 -13.66855 -13.48520 -13.43741 -13.13853 -13.04114 -12.95028 -12.84217 -12.72172 -12.57083 -12.35479 -12.29606 -12.16713 -11.95160 -11.57703 -11.54773 -11.52673 -11.35844 -11.00487 -10.63489 -9.83597 -9.39008 -9.00860 -7.95336 -5.23759 0.01750 0.57807 1.45338 1.46585 1.54878 1.65375 1.95282 2.02566 2.54369 2.80578 3.05824 3.30149 3.35315 3.58266 3.83943 3.86620 3.89412 3.98568 4.05756 4.09060 4.27036 4.35524 4.37515 4.55076 4.55870 4.58567 4.64869 4.67860 4.72639 4.76233 4.83157 4.85738 4.92812 4.95200 5.00947 5.09891 5.16389 5.19589 5.32948 5.50951 5.57993 5.88120 5.99499 6.25509 6.27083 6.74650 7.03767 7.32609 8.06641 8.29627 9.28005 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.004299 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.377927 B = 6511.732390 C = 8547.496822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.121 0.879 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.599 3.401 7 O -0.567 6.567 8 C -0.048 4.048 9 C -0.169 4.169 10 C -0.019 4.019 11 C 0.139 3.861 12 N -0.565 5.565 13 C 0.020 3.980 14 C 0.027 3.973 15 O 0.125 5.875 16 N -0.335 5.335 17 C 0.077 3.923 18 C 0.160 3.840 19 H 0.089 0.911 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.970 5.970 25 Si 0.968 3.032 26 H -0.294 1.294 27 H -0.298 1.298 28 H -0.264 1.264 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.373 0.627 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.744 1.643 5.888 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.139 0.861 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.386 3.614 7 O -0.446 6.446 8 C -0.205 4.205 9 C -0.192 4.192 10 C -0.082 4.082 11 C 0.011 3.989 12 N -0.291 5.291 13 C -0.128 4.128 14 C -0.120 4.120 15 O 0.047 5.953 16 N -0.034 5.034 17 C -0.049 4.049 18 C 0.049 3.951 19 H 0.107 0.893 20 N -0.357 5.357 21 C -0.368 4.368 22 H 0.099 0.901 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.797 3.203 26 H -0.221 1.221 27 H -0.225 1.225 28 H -0.188 1.188 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.210 0.790 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.206 0.794 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.742 2.123 5.582 19.670 hybrid contribution -0.058 -1.155 -0.402 1.224 sum 18.684 0.969 5.179 19.412 Atomic orbital electron populations 1.21531 0.93432 1.01289 1.02112 1.22541 0.96976 0.99714 0.92533 0.86110 1.22159 0.86322 0.94304 0.98035 1.48307 1.28781 1.42526 1.12568 1.16828 0.81133 0.78601 0.84815 1.90716 1.71719 1.65529 1.16671 1.23420 1.01151 1.04291 0.91663 1.22568 0.94180 0.99072 1.03411 1.24805 1.00767 0.98415 0.84253 1.20794 0.88422 0.83990 1.05654 1.61935 1.42049 1.03901 1.21170 1.22434 1.00185 1.02626 0.87580 1.22450 0.92101 0.95026 1.02457 1.84773 1.32771 1.42510 1.35277 1.74350 0.99627 1.11854 1.17551 1.23530 1.00759 1.01281 0.79302 1.21708 0.88140 0.88867 0.96345 0.89318 1.42506 1.50236 1.33838 1.09166 1.19653 1.19602 1.09062 0.88532 0.90127 1.25498 1.00119 0.99793 1.01056 1.69829 1.32349 1.26161 1.33703 0.85221 0.76126 0.78424 0.80509 1.22147 1.22467 1.18832 0.90863 0.92030 0.94835 0.93414 0.89636 0.78996 0.89890 0.84361 0.93375 0.90582 0.94031 0.89590 0.90841 0.93803 0.89746 0.91408 0.79398 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.81 71.98 0.63 -3.32 16 2 C -0.10 -2.96 3.40 -9.60 -0.03 -3.00 16 3 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.11 3.84 6.45 86.73 0.56 4.40 16 5 N -0.59 -22.52 3.32 -814.19 -2.71 -25.22 16 6 C 0.60 24.33 7.88 86.93 0.68 25.02 16 7 O -0.57 -25.08 17.28 -3.71 -0.06 -25.14 16 8 C -0.05 -1.73 7.02 42.96 0.30 -1.43 16 9 C -0.17 -4.79 10.92 22.60 0.25 -4.54 16 10 C -0.02 -0.44 6.03 25.01 0.15 -0.29 16 11 C 0.14 2.00 5.52 85.55 0.47 2.47 16 12 N -0.57 -9.63 5.01 -953.46 -4.78 -14.41 16 13 C 0.02 0.38 9.37 127.69 1.20 1.58 16 14 C 0.03 0.28 9.57 127.69 1.22 1.50 16 15 O 0.12 3.62 10.61 71.88 0.76 4.39 16 16 N -0.33 -11.73 9.30 -49.51 -0.46 -12.19 16 17 C 0.08 2.81 5.90 86.93 0.51 3.32 16 18 C 0.16 6.02 3.47 46.46 0.16 6.18 16 19 H 0.09 3.12 8.09 -2.39 -0.02 3.10 16 20 N -0.72 -35.41 4.58 -316.00 -1.45 -36.86 16 21 C -0.24 -12.89 9.96 84.03 0.84 -12.05 16 22 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 24 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 25 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.31 6.36 -2.39 -0.02 1.30 16 32 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.14 1.23 8.06 -2.39 -0.02 1.21 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 39 H 0.04 1.04 6.84 -2.39 -0.02 1.02 16 40 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 41 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 42 H 0.04 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 44 H 0.07 2.91 6.22 -2.39 -0.01 2.89 16 45 H 0.37 20.39 6.34 -92.71 -0.59 19.80 16 46 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.95 377.24 1.43 -72.52 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.40 Total: 32.26 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.41 Total: 16.15 kcal Atomic # 7 Polarization: -139.56 SS G_CDS: -9.11 Total: -148.66 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.70 Total: -20.76 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.95 1.43 -72.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.681 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds