Wall clock time and date at job start Tue Mar 31 2020 14:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.91700 * 2 1 4 4 C 1.54914 * 111.00217 * 236.10173 * 2 1 3 5 5 N 1.47427 * 104.82959 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64355 * 204.08989 * 5 4 2 7 7 O 1.21493 * 120.00605 * 0.02562 * 6 5 4 8 8 C 1.48334 * 119.99782 * 180.02562 * 6 5 4 9 9 C 1.42273 * 126.94020 * 180.02562 * 8 6 5 10 10 C 1.35315 * 103.92101 * 179.97438 * 9 8 6 11 11 C 1.50701 * 126.66059 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47222 * 90.00421 * 11 10 9 13 13 C 1.46897 * 110.99778 * 169.99655 * 12 11 10 14 14 C 1.46900 * 110.99884 * 293.95492 * 12 11 10 15 15 O 1.34018 * 106.67104 * 0.02562 * 10 9 8 16 16 N 1.20904 * 111.84252 * 359.97438 * 15 10 9 17 17 C 1.47017 * 108.70569 * 24.35326 * 5 4 2 18 18 C 1.54336 * 107.26462 * 358.59004 * 17 5 4 19 19 H 1.08998 * 110.84577 * 219.67424 * 18 17 5 20 20 N 1.46495 * 110.67134 * 96.52264 * 18 17 5 21 21 C 1.36937 * 120.00144 * 91.41169 * 20 18 17 22 22 H 1.07994 * 119.99855 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99580 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00314 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99586 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47284 * 89.99922 * 25 23 21 27 27 H 1.48496 * 109.47078 * 209.99843 * 25 23 21 28 28 H 1.48504 * 109.47290 * 329.99821 * 25 23 21 29 29 H 1.09005 * 109.46960 * 182.44562 * 1 2 3 30 30 H 1.08997 * 109.46846 * 302.44550 * 1 2 3 31 31 H 1.08995 * 109.46961 * 62.44618 * 1 2 3 32 32 H 1.09000 * 110.36868 * 86.07934 * 4 2 1 33 33 H 1.08998 * 110.36771 * 323.75478 * 4 2 1 34 34 H 1.07999 * 128.03464 * 0.26327 * 9 8 6 35 35 H 1.09005 * 109.46984 * 210.00082 * 11 10 9 36 36 H 1.08998 * 109.47396 * 330.00345 * 11 10 9 37 37 H 1.09000 * 109.47449 * 60.00176 * 13 12 11 38 38 H 1.09004 * 109.47056 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47185 * 299.99440 * 13 12 11 40 40 H 1.08995 * 109.47292 * 59.99681 * 14 12 11 41 41 H 1.08998 * 109.47139 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.46564 * 299.99484 * 14 12 11 43 43 H 1.09005 * 109.87892 * 118.12916 * 17 5 4 44 44 H 1.08994 * 109.88301 * 239.29622 * 17 5 4 45 45 H 0.96999 * 119.99697 * 271.41323 * 20 18 17 46 46 H 0.96997 * 119.99697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5616 -1.5942 7 8 4.3006 -1.4997 -2.7987 8 6 5.7503 -1.9877 -1.0271 9 6 6.9190 -2.3546 -1.7508 10 6 7.8185 -2.6554 -0.7857 11 6 9.2404 -3.1104 -0.9912 12 7 10.1266 -1.9400 -1.0423 13 6 11.5378 -2.3461 -1.0034 14 6 9.8473 -1.1196 -2.2285 15 8 7.1989 -2.4710 0.3883 16 7 6.0570 -2.1021 0.2412 17 6 3.4658 -1.2794 0.6958 18 6 2.0862 -0.8080 1.2021 19 1 2.1923 -0.1700 2.0795 20 7 1.2246 -1.9551 1.4988 21 6 1.2044 -2.4882 2.7600 22 1 1.8239 -2.0632 3.5358 23 6 0.3883 -3.5754 3.0408 24 7 -0.3663 -4.0936 2.0951 25 14 0.3612 -4.3031 4.7611 26 1 -0.6846 -3.6255 5.5688 27 1 0.0605 -5.7550 4.6797 28 1 1.6863 -4.1073 5.4023 29 1 -0.3633 -1.0268 0.0439 30 1 -0.3633 0.5513 0.8672 31 1 -0.3633 0.4754 -0.9111 32 1 2.1560 -0.1719 -2.0837 33 1 1.4519 -1.6703 -1.4026 34 1 7.0575 -2.3816 -2.8215 35 1 9.5383 -3.7559 -0.1648 36 1 9.3134 -3.6626 -1.9281 37 1 11.7553 -2.9867 -1.8580 38 1 12.1720 -1.4604 -1.0421 39 1 11.7333 -2.8924 -0.0807 40 1 8.8140 -0.7745 -2.1964 41 1 10.5176 -0.2602 -2.2419 42 1 10.0036 -1.7159 -3.1275 43 1 3.6602 -2.2965 1.0364 44 1 4.2425 -0.6086 1.0629 45 1 0.6685 -2.3370 0.8018 46 1 -0.9362 -4.8536 2.2914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054833086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:46 Heat of formation + Delta-G solvation = 61.648954 kcal Electronic energy + Delta-G solvation = -27659.852406 eV Core-core repulsion = 23782.016773 eV Total energy + Delta-G solvation = -3877.835632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.07010 -39.76422 -37.98737 -37.63402 -34.10899 -33.87063 -32.72334 -32.04023 -30.47059 -28.04423 -27.76505 -27.67559 -26.71376 -24.23728 -23.69923 -22.99003 -22.43034 -21.51301 -19.29486 -18.96519 -17.84101 -17.57539 -17.25812 -16.64978 -15.83887 -15.72611 -15.63899 -15.27943 -14.98963 -14.60809 -14.27683 -13.86341 -13.68955 -13.42125 -13.13798 -12.98829 -12.83303 -12.67407 -12.29480 -12.18590 -12.15355 -12.02384 -11.95540 -11.56978 -11.36165 -11.11943 -10.92297 -10.73614 -10.45343 -10.38384 -10.25569 -10.10021 -9.90683 -9.68008 -9.62488 -9.00316 -8.85714 -8.33000 -7.05762 -5.82457 -3.12301 1.17380 1.58652 2.81176 3.06394 3.32659 3.41347 3.47243 3.48565 3.59255 4.01846 4.33024 4.54654 4.64900 4.72736 4.82584 4.94977 4.96521 5.01113 5.15931 5.17801 5.20543 5.29758 5.34539 5.37841 5.45876 5.56055 5.58873 5.66571 5.75864 5.80220 5.90792 5.99430 6.19031 6.28256 6.33390 6.41909 6.42541 6.49508 6.56442 6.59270 6.79690 6.96132 7.66521 7.71644 8.00782 8.27673 8.35402 9.47272 10.01098 10.36224 11.39712 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.003224 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.525694 B = 8683.763895 C =10102.028190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.590 5.590 6 C 0.606 3.394 7 O -0.541 6.541 8 C -0.020 4.020 9 C -0.176 4.176 10 C -0.031 4.031 11 C 0.134 3.866 12 N -0.545 5.545 13 C 0.025 3.975 14 C 0.016 3.984 15 O 0.133 5.867 16 N -0.313 5.313 17 C 0.076 3.924 18 C 0.171 3.829 19 H 0.075 0.925 20 N -0.710 5.710 21 C -0.244 4.244 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.386 0.614 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.764 5.728 -8.442 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.321 5.321 6 C 0.392 3.608 7 O -0.419 6.419 8 C -0.179 4.179 9 C -0.199 4.199 10 C -0.095 4.095 11 C 0.006 3.994 12 N -0.269 5.269 13 C -0.122 4.122 14 C -0.132 4.132 15 O 0.055 5.945 16 N -0.012 5.012 17 C -0.050 4.050 18 C 0.059 3.941 19 H 0.093 0.907 20 N -0.351 5.351 21 C -0.375 4.375 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.194 0.806 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.222 0.778 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.886 6.182 -7.402 21.205 hybrid contribution 0.247 -1.232 -0.763 1.470 sum 19.132 4.950 -8.165 21.382 Atomic orbital electron populations 1.21561 0.93155 1.03614 1.00599 1.22664 0.97129 0.98464 0.95290 0.90295 1.22353 0.82052 0.98649 0.97613 1.48310 1.11641 1.63662 1.08533 1.16475 0.81055 0.78045 0.85232 1.90754 1.82443 1.55123 1.13559 1.23405 0.97856 1.06959 0.89655 1.22368 0.90905 1.04916 1.01758 1.24111 0.97097 1.03760 0.84518 1.20487 0.83858 0.91991 1.03078 1.61898 1.04311 1.19483 1.41252 1.22404 0.87544 1.00981 1.01298 1.22538 1.03204 0.97555 0.89944 1.84842 1.17880 1.60464 1.31327 1.74422 0.95204 1.12501 1.19031 1.23416 1.01216 1.02946 0.77418 1.21237 0.88177 0.89925 0.94781 0.90741 1.42450 1.48556 1.33255 1.10875 1.19248 1.20454 1.10126 0.87707 0.90943 1.24748 0.99343 0.98762 0.97718 1.69655 1.29991 1.26333 1.31829 0.86190 0.77668 0.78301 0.84024 1.21661 1.21818 1.20643 0.90759 0.92220 0.93665 0.90912 0.90791 0.80625 0.87857 0.90898 0.95218 0.90822 0.90799 0.90821 0.90910 0.95071 0.89980 0.92207 0.77801 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.98 37.16 0.33 -1.77 16 2 C -0.12 -1.87 3.52 -88.47 -0.31 -2.18 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.12 1.98 6.34 -2.52 -0.02 1.96 16 5 N -0.59 -10.89 3.33 -171.44 -0.57 -11.46 16 6 C 0.61 11.34 7.88 -12.10 -0.10 11.24 16 7 O -0.54 -10.98 17.21 5.37 0.09 -10.89 16 8 C -0.02 -0.33 7.03 -82.52 -0.58 -0.91 16 9 C -0.18 -2.26 9.58 -39.07 -0.37 -2.63 16 10 C -0.03 -0.35 6.34 -35.35 -0.22 -0.58 16 11 C 0.13 1.02 5.52 -4.97 -0.03 0.99 16 12 N -0.54 -4.27 5.01 -252.72 -1.27 -5.53 16 13 C 0.03 0.14 9.57 60.06 0.57 0.71 16 14 C 0.02 0.11 9.29 60.06 0.56 0.67 16 15 O 0.13 1.86 11.18 17.24 0.19 2.06 16 16 N -0.31 -5.17 9.73 33.30 0.32 -4.85 16 17 C 0.08 1.43 5.30 -3.06 -0.02 1.41 16 18 C 0.17 3.30 3.39 -66.09 -0.22 3.08 16 19 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 20 N -0.71 -16.95 4.46 -51.65 -0.23 -17.18 16 21 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.07 1.40 6.26 -51.93 -0.33 1.08 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 33 H 0.07 1.36 8.04 -51.93 -0.42 0.95 16 34 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.10 0.65 8.06 -51.93 -0.42 0.23 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 37 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 39 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 40 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 41 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 42 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.08 1.79 7.71 -51.93 -0.40 1.39 16 44 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 45 H 0.39 9.85 6.24 -40.82 -0.25 9.59 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -31.98 376.88 -7.88 -39.85 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.15 Total: 7.07 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.65 Total: 4.96 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.02 Total: -65.79 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.29 Total: -8.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.98 -7.88 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.503 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds