Wall clock time and date at job start Tue Mar 31 2020 14:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.91700 * 2 1 4 4 C 1.54914 * 111.00217 * 236.10173 * 2 1 3 5 5 N 1.47427 * 104.82959 * 204.91674 * 4 2 1 6 6 C 1.34780 * 125.64355 * 204.08989 * 5 4 2 7 7 O 1.21493 * 120.00605 * 0.02562 * 6 5 4 8 8 C 1.48334 * 119.99782 * 180.02562 * 6 5 4 9 9 C 1.42273 * 126.94020 * 180.02562 * 8 6 5 10 10 C 1.35315 * 103.92101 * 179.97438 * 9 8 6 11 11 C 1.50701 * 126.66059 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47222 * 90.00421 * 11 10 9 13 13 C 1.46897 * 110.99778 * 169.99655 * 12 11 10 14 14 C 1.46900 * 110.99884 * 293.95492 * 12 11 10 15 15 O 1.34018 * 106.67104 * 0.02562 * 10 9 8 16 16 N 1.20904 * 111.84252 * 359.97438 * 15 10 9 17 17 C 1.47017 * 108.70569 * 24.35326 * 5 4 2 18 18 C 1.54336 * 107.26462 * 358.59004 * 17 5 4 19 19 H 1.08998 * 110.84577 * 219.67424 * 18 17 5 20 20 N 1.46495 * 110.67134 * 96.52264 * 18 17 5 21 21 C 1.36937 * 120.00144 * 91.41169 * 20 18 17 22 22 H 1.07994 * 119.99855 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99580 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00314 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99586 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47284 * 89.99922 * 25 23 21 27 27 H 1.48496 * 109.47078 * 209.99843 * 25 23 21 28 28 H 1.48504 * 109.47290 * 329.99821 * 25 23 21 29 29 H 1.09005 * 109.46960 * 182.44562 * 1 2 3 30 30 H 1.08997 * 109.46846 * 302.44550 * 1 2 3 31 31 H 1.08995 * 109.46961 * 62.44618 * 1 2 3 32 32 H 1.09000 * 110.36868 * 86.07934 * 4 2 1 33 33 H 1.08998 * 110.36771 * 323.75478 * 4 2 1 34 34 H 1.07999 * 128.03464 * 0.26327 * 9 8 6 35 35 H 1.09005 * 109.46984 * 210.00082 * 11 10 9 36 36 H 1.08998 * 109.47396 * 330.00345 * 11 10 9 37 37 H 1.09000 * 109.47449 * 60.00176 * 13 12 11 38 38 H 1.09004 * 109.47056 * 180.02562 * 13 12 11 39 39 H 1.08996 * 109.47185 * 299.99440 * 13 12 11 40 40 H 1.08995 * 109.47292 * 59.99681 * 14 12 11 41 41 H 1.08998 * 109.47139 * 180.02562 * 14 12 11 42 42 H 1.09007 * 109.46564 * 299.99484 * 14 12 11 43 43 H 1.09005 * 109.87892 * 118.12916 * 17 5 4 44 44 H 1.08994 * 109.88301 * 239.29622 * 17 5 4 45 45 H 0.96999 * 119.99697 * 271.41323 * 20 18 17 46 46 H 0.96997 * 119.99697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5616 -1.5942 7 8 4.3006 -1.4997 -2.7987 8 6 5.7503 -1.9877 -1.0271 9 6 6.9190 -2.3546 -1.7508 10 6 7.8185 -2.6554 -0.7857 11 6 9.2404 -3.1104 -0.9912 12 7 10.1266 -1.9400 -1.0423 13 6 11.5378 -2.3461 -1.0034 14 6 9.8473 -1.1196 -2.2285 15 8 7.1989 -2.4710 0.3883 16 7 6.0570 -2.1021 0.2412 17 6 3.4658 -1.2794 0.6958 18 6 2.0862 -0.8080 1.2021 19 1 2.1923 -0.1700 2.0795 20 7 1.2246 -1.9551 1.4988 21 6 1.2044 -2.4882 2.7600 22 1 1.8239 -2.0632 3.5358 23 6 0.3883 -3.5754 3.0408 24 7 -0.3663 -4.0936 2.0951 25 14 0.3612 -4.3031 4.7611 26 1 -0.6846 -3.6255 5.5688 27 1 0.0605 -5.7550 4.6797 28 1 1.6863 -4.1073 5.4023 29 1 -0.3633 -1.0268 0.0439 30 1 -0.3633 0.5513 0.8672 31 1 -0.3633 0.4754 -0.9111 32 1 2.1560 -0.1719 -2.0837 33 1 1.4519 -1.6703 -1.4026 34 1 7.0575 -2.3816 -2.8215 35 1 9.5383 -3.7559 -0.1648 36 1 9.3134 -3.6626 -1.9281 37 1 11.7553 -2.9867 -1.8580 38 1 12.1720 -1.4604 -1.0421 39 1 11.7333 -2.8924 -0.0807 40 1 8.8140 -0.7745 -2.1964 41 1 10.5176 -0.2602 -2.2419 42 1 10.0036 -1.7159 -3.1275 43 1 3.6602 -2.2965 1.0364 44 1 4.2425 -0.6086 1.0629 45 1 0.6685 -2.3370 0.8018 46 1 -0.9362 -4.8536 2.2914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054833086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:45 Heat of formation + Delta-G solvation = 39.613778 kcal Electronic energy + Delta-G solvation = -27660.807923 eV Core-core repulsion = 23782.016773 eV Total energy + Delta-G solvation = -3878.791149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.21326 -41.24250 -39.16038 -38.55599 -35.82544 -35.14870 -34.04375 -33.28164 -32.25598 -29.45688 -28.62346 -28.31685 -28.06543 -25.89071 -25.28274 -24.03144 -23.42525 -22.69152 -20.79247 -20.24090 -19.44042 -18.97256 -18.39683 -18.01932 -17.32654 -16.70858 -16.45817 -16.24715 -16.22893 -15.99887 -15.71982 -15.45602 -14.85417 -14.72473 -14.56539 -14.26836 -14.05194 -13.63603 -13.41929 -13.31815 -13.12798 -12.90565 -12.85420 -12.80981 -12.77551 -12.55596 -12.39090 -12.35889 -12.14659 -12.01549 -11.59518 -11.58513 -11.50049 -11.37964 -10.98879 -10.66199 -9.85017 -9.37896 -9.05494 -7.94724 -5.23408 0.00720 0.53730 1.48063 1.48859 1.57138 1.62555 1.94514 1.97429 2.55683 2.76955 3.02938 3.30652 3.36149 3.58040 3.82148 3.84726 3.85535 3.98277 4.01550 4.07323 4.24541 4.35557 4.43778 4.49539 4.55172 4.56699 4.58590 4.65707 4.74036 4.77048 4.82745 4.83952 4.92622 4.96119 5.04011 5.10993 5.11791 5.18214 5.27436 5.52612 5.58392 5.90417 6.01003 6.23911 6.26477 6.70774 7.02820 7.34022 8.06042 8.30329 9.28338 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.003224 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.525694 B = 8683.763895 C =10102.028190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 H 0.110 0.890 4 C 0.114 3.886 5 N -0.595 5.595 6 C 0.601 3.399 7 O -0.562 6.562 8 C -0.048 4.048 9 C -0.178 4.178 10 C -0.010 4.010 11 C 0.134 3.866 12 N -0.563 5.563 13 C 0.026 3.974 14 C 0.016 3.984 15 O 0.134 5.866 16 N -0.339 5.339 17 C 0.094 3.906 18 C 0.163 3.837 19 H 0.084 0.916 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.079 0.921 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.969 3.031 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.270 1.270 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.194 0.806 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.376 0.624 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.027 6.605 -8.457 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.008 4.008 5 N -0.326 5.326 6 C 0.389 3.611 7 O -0.441 6.441 8 C -0.205 4.205 9 C -0.201 4.201 10 C -0.074 4.074 11 C 0.006 3.994 12 N -0.288 5.288 13 C -0.121 4.121 14 C -0.132 4.132 15 O 0.055 5.945 16 N -0.037 5.037 17 C -0.032 4.032 18 C 0.052 3.948 19 H 0.102 0.898 20 N -0.359 5.359 21 C -0.370 4.370 22 H 0.097 0.903 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.798 3.202 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.138 0.862 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.210 0.790 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.178 7.107 -7.409 23.535 hybrid contribution -0.308 -1.461 -0.808 1.698 sum 20.870 5.646 -8.216 23.128 Atomic orbital electron populations 1.21483 0.92886 1.01750 1.02140 1.22627 0.97192 0.99212 0.92813 0.87146 1.22403 0.81337 0.98314 0.98732 1.48404 1.12132 1.63781 1.08298 1.16813 0.81773 0.77457 0.85070 1.90723 1.83071 1.56045 1.14290 1.23380 0.97964 1.08644 0.90506 1.22581 0.89794 1.04967 1.02800 1.24788 0.98232 1.01485 0.82918 1.20736 0.81435 0.92250 1.04955 1.61872 1.05578 1.19721 1.41658 1.22451 0.85942 1.01517 1.02191 1.22521 1.02153 0.98069 0.90470 1.84796 1.17245 1.59876 1.32596 1.74408 0.96391 1.13609 1.19299 1.23064 1.01082 1.01223 0.77809 1.21481 0.87779 0.88996 0.96558 0.89806 1.42566 1.49155 1.34447 1.09754 1.19626 1.19072 1.09434 0.88822 0.90291 1.25499 0.99983 0.99872 1.01098 1.69812 1.31390 1.26991 1.33653 0.85204 0.77969 0.76815 0.80163 1.21278 1.22736 1.19513 0.94121 0.92089 0.90797 0.89297 0.92761 0.78917 0.86152 0.88569 0.94018 0.90421 0.90119 0.92752 0.90280 0.93782 0.93249 0.90841 0.79042 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.98 71.98 0.65 -3.23 16 2 C -0.10 -3.06 3.52 -9.40 -0.03 -3.09 16 3 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 4 C 0.11 3.86 6.34 86.86 0.55 4.41 16 5 N -0.59 -22.01 3.33 -814.61 -2.71 -24.72 16 6 C 0.60 22.66 7.88 86.93 0.68 23.34 16 7 O -0.56 -22.86 17.21 -3.69 -0.06 -22.93 16 8 C -0.05 -1.57 7.03 42.96 0.30 -1.27 16 9 C -0.18 -4.38 9.58 22.60 0.22 -4.17 16 10 C -0.01 -0.22 6.34 25.01 0.16 -0.06 16 11 C 0.13 1.66 5.52 85.56 0.47 2.14 16 12 N -0.56 -7.38 5.01 -953.47 -4.78 -12.16 16 13 C 0.03 0.20 9.57 127.69 1.22 1.42 16 14 C 0.02 0.20 9.29 127.69 1.19 1.39 16 15 O 0.13 3.66 11.18 71.86 0.80 4.47 16 16 N -0.34 -11.20 9.73 -49.50 -0.48 -11.68 16 17 C 0.09 3.55 5.30 86.73 0.46 4.01 16 18 C 0.16 6.19 3.39 46.18 0.16 6.35 16 19 H 0.08 3.05 8.09 -2.39 -0.02 3.03 16 20 N -0.72 -34.86 4.46 -317.32 -1.42 -36.28 16 21 C -0.24 -12.80 9.96 84.03 0.84 -11.97 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 24 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 25 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.04 1.55 6.26 -2.38 -0.01 1.53 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.73 8.04 -2.39 -0.02 2.71 16 33 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 34 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.12 1.12 8.06 -2.38 -0.02 1.10 16 36 H 0.10 0.80 8.12 -2.39 -0.02 0.78 16 37 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 39 H 0.08 0.52 8.12 -2.39 -0.02 0.50 16 40 H 0.05 0.89 6.34 -2.39 -0.02 0.88 16 41 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 42 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.05 2.20 7.71 -2.38 -0.02 2.18 16 44 H 0.07 2.57 7.67 -2.39 -0.02 2.55 16 45 H 0.38 19.80 6.24 -92.71 -0.58 19.22 16 46 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -70.42 376.88 1.40 -69.02 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.41 Total: 29.17 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 7.33 Total: 15.65 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -9.10 Total: -143.35 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.74 Total: -18.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.42 1.40 -69.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.637 kcal (2) G-P(sol) polarization free energy of solvation -70.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds