Wall clock time and date at job start Tue Mar 31 2020 14:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.64188 * 2 1 4 4 C 1.54320 * 110.72031 * 236.66879 * 2 1 3 5 5 N 1.47019 * 107.27366 * 219.44021 * 4 2 1 6 6 C 1.34779 * 125.65427 * 178.95759 * 5 4 2 7 7 O 1.21497 * 119.99595 * 0.02562 * 6 5 4 8 8 C 1.48331 * 120.00292 * 179.97438 * 6 5 4 9 9 C 1.42273 * 126.93659 * 180.02562 * 8 6 5 10 10 C 1.35312 * 103.91935 * 180.02562 * 9 8 6 11 11 C 1.50705 * 126.66530 * 180.02562 * 10 9 8 12 12 N 1.46907 * 109.46985 * 89.99731 * 11 10 9 13 13 C 1.46900 * 110.99647 * 66.04835 * 12 11 10 14 14 C 1.46900 * 110.99699 * 189.99838 * 12 11 10 15 15 O 1.34014 * 106.67154 * 359.97438 * 10 9 8 16 16 N 1.20909 * 111.84249 * 359.70875 * 15 10 9 17 17 C 1.47426 * 108.70253 * 358.93954 * 5 4 2 18 18 C 1.54913 * 104.83287 * 24.12636 * 17 5 4 19 19 H 1.09005 * 111.03365 * 81.07756 * 18 17 5 20 20 N 1.46499 * 111.00663 * 204.91747 * 18 17 5 21 21 C 1.36935 * 119.99938 * 267.19791 * 20 18 17 22 22 H 1.07999 * 120.00083 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99632 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99535 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 0.27829 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 H 1.09002 * 109.47167 * 296.85101 * 1 2 3 30 30 H 1.08993 * 109.47850 * 56.85826 * 1 2 3 31 31 H 1.09000 * 109.46940 * 176.85813 * 1 2 3 32 32 H 1.09002 * 109.88406 * 338.85597 * 4 2 1 33 33 H 1.08999 * 109.88875 * 99.86855 * 4 2 1 34 34 H 1.07997 * 128.04066 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47413 * 209.99717 * 11 10 9 36 36 H 1.08994 * 109.47022 * 330.00189 * 11 10 9 37 37 H 1.08995 * 109.47647 * 60.00002 * 13 12 11 38 38 H 1.09005 * 109.46676 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.47061 * 299.99736 * 13 12 11 40 40 H 1.09002 * 109.46951 * 60.00609 * 14 12 11 41 41 H 1.09004 * 109.46701 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47587 * 300.00034 * 14 12 11 43 43 H 1.09005 * 110.36543 * 265.28989 * 17 5 4 44 44 H 1.08998 * 110.37275 * 142.96663 * 17 5 4 45 45 H 0.97004 * 119.99469 * 87.19859 * 20 18 17 46 46 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7931 -1.2060 5 7 3.2444 -1.5518 -0.7366 6 6 3.9921 -2.3862 -1.4858 7 8 3.7188 -2.5608 -2.6567 8 6 5.1492 -3.0903 -0.8813 9 6 6.0327 -3.9970 -1.5306 10 6 6.9031 -4.3556 -0.5587 11 6 8.0630 -5.3080 -0.6960 12 7 9.2653 -4.5617 -1.0904 13 6 9.6898 -3.6456 -0.0234 14 6 10.3533 -5.4755 -1.4635 15 8 6.5342 -3.6985 0.5495 16 7 5.5676 -2.9983 0.3565 17 6 3.4633 -1.2486 0.6895 18 6 2.0790 -0.7934 1.2151 19 1 1.4448 -1.6508 1.4406 20 7 2.2215 0.0736 2.3874 21 6 2.1869 -0.4652 3.6457 22 1 2.0549 -1.5294 3.7740 23 6 2.3225 0.3562 4.7564 24 7 2.2887 -0.1617 5.9660 25 14 2.5443 2.1977 4.5347 26 1 3.9922 2.5140 4.4407 27 1 1.8608 2.6323 3.2901 28 1 1.9563 2.9107 5.6971 29 1 -0.3633 0.4642 0.9169 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3129 -1.4784 -1.5751 33 1 2.3714 -0.1058 -1.9987 34 1 6.0131 -4.3232 -2.5599 35 1 8.2403 -5.8047 0.2579 36 1 7.8326 -6.0539 -1.4567 37 1 9.9127 -4.2161 0.8781 38 1 10.5815 -3.1054 -0.3418 39 1 8.8900 -2.9349 0.1848 40 1 10.0359 -6.0952 -2.3021 41 1 11.2313 -4.8969 -1.7507 42 1 10.6003 -6.1124 -0.6141 43 1 4.1932 -0.4464 0.7990 44 1 3.7961 -2.1404 1.2204 45 1 2.3404 1.0294 2.2720 46 1 2.3831 0.4124 6.7422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054833087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:49 Heat of formation + Delta-G solvation = 62.802702 kcal Electronic energy + Delta-G solvation = -27542.540957 eV Core-core repulsion = 23664.755355 eV Total energy + Delta-G solvation = -3877.785602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.11945 -39.88912 -37.91503 -37.71814 -34.29462 -34.04442 -32.86593 -32.14595 -31.04831 -27.99403 -27.95429 -27.69963 -26.90263 -24.34467 -23.56992 -23.09991 -22.14877 -21.13646 -20.17863 -19.14629 -17.92547 -17.63487 -17.40864 -16.81963 -16.10091 -15.70886 -15.62418 -15.46802 -14.97527 -14.61445 -14.21767 -13.93555 -13.50548 -13.30338 -13.27450 -13.15550 -12.83262 -12.75731 -12.66559 -12.56265 -12.19168 -12.08080 -12.01072 -11.81773 -11.54017 -11.27778 -11.12931 -10.76015 -10.69037 -10.46694 -10.37384 -10.19249 -10.02183 -9.67715 -9.65048 -9.04725 -8.84871 -8.50500 -7.39643 -5.84150 -3.22098 1.10944 1.57562 2.73942 2.93619 3.22411 3.32680 3.35588 3.41331 3.63814 3.94499 4.20826 4.52277 4.63081 4.71199 4.83371 4.87113 4.98634 4.99354 5.01222 5.08176 5.18109 5.23688 5.25828 5.38142 5.40852 5.45482 5.51470 5.65758 5.67460 5.70922 5.77084 5.77556 5.83040 6.09919 6.11302 6.29925 6.37221 6.43277 6.43782 6.50141 6.50974 6.73001 7.53898 7.88915 7.93600 8.17301 8.34207 9.10455 9.82491 10.00544 11.33539 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003412 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.383774 B = 8204.001390 C = 9904.838453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.609 3.391 7 O -0.537 6.537 8 C -0.025 4.025 9 C -0.158 4.158 10 C -0.039 4.039 11 C 0.137 3.863 12 N -0.545 5.545 13 C 0.018 3.982 14 C 0.025 3.975 15 O 0.124 5.876 16 N -0.311 5.311 17 C 0.071 3.929 18 C 0.183 3.817 19 H 0.077 0.923 20 N -0.732 5.732 21 C -0.251 4.251 22 H 0.092 0.908 23 C 0.010 3.990 24 N -0.929 5.929 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.276 1.276 28 H -0.290 1.290 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.179 0.821 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.364 0.636 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 -9.109 -16.117 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.101 0.899 4 C -0.005 4.005 5 N -0.331 5.331 6 C 0.395 3.605 7 O -0.414 6.414 8 C -0.184 4.184 9 C -0.182 4.182 10 C -0.102 4.102 11 C 0.008 3.992 12 N -0.270 5.270 13 C -0.130 4.130 14 C -0.123 4.123 15 O 0.046 5.954 16 N -0.010 5.010 17 C -0.054 4.054 18 C 0.071 3.929 19 H 0.095 0.905 20 N -0.373 5.373 21 C -0.380 4.380 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.713 3.287 26 H -0.210 1.210 27 H -0.202 1.202 28 H -0.216 1.216 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.197 0.803 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.198 0.802 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.748 -8.372 -15.906 20.943 hybrid contribution 0.630 0.632 0.026 0.892 sum 11.378 -7.740 -15.880 21.013 Atomic orbital electron populations 1.21673 0.93559 1.01928 1.02091 1.22583 0.96837 0.99683 0.94771 0.89888 1.22041 0.87032 0.94426 0.96964 1.48342 1.29233 1.42549 1.12956 1.16497 0.80450 0.78715 0.84860 1.90764 1.70459 1.64804 1.15361 1.23410 1.00930 1.02942 0.91119 1.22330 0.94606 0.99464 1.01759 1.24156 0.99814 1.00168 0.86067 1.20519 0.85273 0.91422 1.01945 1.61992 1.04751 1.19866 1.40387 1.22496 1.01814 0.96543 0.92143 1.22400 0.93867 0.95705 1.00318 1.84854 1.33981 1.42108 1.34426 1.74458 0.99122 1.09651 1.17766 1.23665 1.01742 1.02044 0.77966 1.21349 0.92083 0.93654 0.85864 0.90468 1.42622 1.87842 1.04998 1.01868 1.19062 1.43084 0.94767 0.81113 0.89012 1.24666 1.01467 0.97442 0.95046 1.69702 1.56329 1.34515 0.97018 0.86585 0.78054 0.87018 0.77074 1.20985 1.20202 1.21630 0.91308 0.93032 0.92544 0.91023 0.91500 0.80316 0.91850 0.87161 0.94745 0.90882 0.91062 0.90926 0.90805 0.95114 0.91259 0.89342 0.80240 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.16 37.15 0.34 -1.49 16 2 C -0.12 -1.80 3.20 -88.79 -0.28 -2.09 16 3 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 4 C 0.12 1.74 6.46 -3.07 -0.02 1.72 16 5 N -0.60 -10.08 3.33 -171.45 -0.57 -10.65 16 6 C 0.61 10.57 7.88 -12.11 -0.10 10.48 16 7 O -0.54 -10.14 17.28 5.37 0.09 -10.05 16 8 C -0.03 -0.40 7.02 -82.53 -0.58 -0.98 16 9 C -0.16 -1.98 10.92 -39.08 -0.43 -2.41 16 10 C -0.04 -0.43 6.03 -35.35 -0.21 -0.64 16 11 C 0.14 1.02 5.53 -4.97 -0.03 1.00 16 12 N -0.55 -4.34 5.01 -252.71 -1.27 -5.60 16 13 C 0.02 0.15 9.37 60.06 0.56 0.71 16 14 C 0.02 0.13 9.57 60.06 0.57 0.71 16 15 O 0.12 1.70 10.60 17.25 0.18 1.88 16 16 N -0.31 -5.03 9.31 33.29 0.31 -4.72 16 17 C 0.07 1.30 5.86 -2.53 -0.01 1.28 16 18 C 0.18 3.42 3.16 -65.78 -0.21 3.21 16 19 H 0.08 1.51 8.00 -51.93 -0.42 1.10 16 20 N -0.73 -16.53 5.05 -51.35 -0.26 -16.79 16 21 C -0.25 -6.81 10.44 -15.06 -0.16 -6.97 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 25 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.11 0.59 8.06 -51.93 -0.42 0.17 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.07 0.72 6.83 -51.93 -0.35 0.36 16 40 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.73 6.24 -51.93 -0.32 1.40 16 45 H 0.36 8.07 5.62 -40.82 -0.23 7.84 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -32.73 377.45 -7.62 -40.35 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.22 Total: 6.14 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.64 Total: 4.74 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.01 Total: -65.53 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.28 Total: -8.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.73 -7.62 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.152 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds