Wall clock time and date at job start Tue Mar 31 2020 14:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.64188 * 2 1 4 4 C 1.54320 * 110.72031 * 236.66879 * 2 1 3 5 5 N 1.47019 * 107.27366 * 219.44021 * 4 2 1 6 6 C 1.34779 * 125.65427 * 178.95759 * 5 4 2 7 7 O 1.21497 * 119.99595 * 0.02562 * 6 5 4 8 8 C 1.48331 * 120.00292 * 179.97438 * 6 5 4 9 9 C 1.42273 * 126.93659 * 180.02562 * 8 6 5 10 10 C 1.35312 * 103.91935 * 180.02562 * 9 8 6 11 11 C 1.50705 * 126.66530 * 180.02562 * 10 9 8 12 12 N 1.46907 * 109.46985 * 89.99731 * 11 10 9 13 13 C 1.46900 * 110.99647 * 66.04835 * 12 11 10 14 14 C 1.46900 * 110.99699 * 189.99838 * 12 11 10 15 15 O 1.34014 * 106.67154 * 359.97438 * 10 9 8 16 16 N 1.20909 * 111.84249 * 359.70875 * 15 10 9 17 17 C 1.47426 * 108.70253 * 358.93954 * 5 4 2 18 18 C 1.54913 * 104.83287 * 24.12636 * 17 5 4 19 19 H 1.09005 * 111.03365 * 81.07756 * 18 17 5 20 20 N 1.46499 * 111.00663 * 204.91747 * 18 17 5 21 21 C 1.36935 * 119.99938 * 267.19791 * 20 18 17 22 22 H 1.07999 * 120.00083 * 0.02562 * 21 20 18 23 23 C 1.38812 * 119.99632 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99535 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 0.27829 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 H 1.09002 * 109.47167 * 296.85101 * 1 2 3 30 30 H 1.08993 * 109.47850 * 56.85826 * 1 2 3 31 31 H 1.09000 * 109.46940 * 176.85813 * 1 2 3 32 32 H 1.09002 * 109.88406 * 338.85597 * 4 2 1 33 33 H 1.08999 * 109.88875 * 99.86855 * 4 2 1 34 34 H 1.07997 * 128.04066 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47413 * 209.99717 * 11 10 9 36 36 H 1.08994 * 109.47022 * 330.00189 * 11 10 9 37 37 H 1.08995 * 109.47647 * 60.00002 * 13 12 11 38 38 H 1.09005 * 109.46676 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.47061 * 299.99736 * 13 12 11 40 40 H 1.09002 * 109.46951 * 60.00609 * 14 12 11 41 41 H 1.09004 * 109.46701 * 180.02562 * 14 12 11 42 42 H 1.08997 * 109.47587 * 300.00034 * 14 12 11 43 43 H 1.09005 * 110.36543 * 265.28989 * 17 5 4 44 44 H 1.08998 * 110.37275 * 142.96663 * 17 5 4 45 45 H 0.97004 * 119.99469 * 87.19859 * 20 18 17 46 46 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7931 -1.2060 5 7 3.2444 -1.5518 -0.7366 6 6 3.9921 -2.3862 -1.4858 7 8 3.7188 -2.5608 -2.6567 8 6 5.1492 -3.0903 -0.8813 9 6 6.0327 -3.9970 -1.5306 10 6 6.9031 -4.3556 -0.5587 11 6 8.0630 -5.3080 -0.6960 12 7 9.2653 -4.5617 -1.0904 13 6 9.6898 -3.6456 -0.0234 14 6 10.3533 -5.4755 -1.4635 15 8 6.5342 -3.6985 0.5495 16 7 5.5676 -2.9983 0.3565 17 6 3.4633 -1.2486 0.6895 18 6 2.0790 -0.7934 1.2151 19 1 1.4448 -1.6508 1.4406 20 7 2.2215 0.0736 2.3874 21 6 2.1869 -0.4652 3.6457 22 1 2.0549 -1.5294 3.7740 23 6 2.3225 0.3562 4.7564 24 7 2.2887 -0.1617 5.9660 25 14 2.5443 2.1977 4.5347 26 1 3.9922 2.5140 4.4407 27 1 1.8608 2.6323 3.2901 28 1 1.9563 2.9107 5.6971 29 1 -0.3633 0.4642 0.9169 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3129 -1.4784 -1.5751 33 1 2.3714 -0.1058 -1.9987 34 1 6.0131 -4.3232 -2.5599 35 1 8.2403 -5.8047 0.2579 36 1 7.8326 -6.0539 -1.4567 37 1 9.9127 -4.2161 0.8781 38 1 10.5815 -3.1054 -0.3418 39 1 8.8900 -2.9349 0.1848 40 1 10.0359 -6.0952 -2.3021 41 1 11.2313 -4.8969 -1.7507 42 1 10.6003 -6.1124 -0.6141 43 1 4.1932 -0.4464 0.7990 44 1 3.7961 -2.1404 1.2204 45 1 2.3404 1.0294 2.2720 46 1 2.3831 0.4124 6.7422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054833087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:48 Heat of formation + Delta-G solvation = 39.476821 kcal Electronic energy + Delta-G solvation = -27543.552443 eV Core-core repulsion = 23664.755355 eV Total energy + Delta-G solvation = -3878.797088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.22782 -41.26288 -39.15004 -38.51021 -36.07600 -35.20935 -34.13045 -33.37483 -32.84266 -29.61089 -28.58001 -28.35881 -28.09733 -25.86618 -25.08176 -24.05199 -23.10481 -22.54032 -21.62633 -20.35088 -19.58206 -19.02716 -18.50774 -18.08468 -17.47259 -16.87220 -16.42547 -16.25505 -16.21155 -15.86821 -15.71229 -15.17152 -14.86778 -14.79167 -14.62655 -14.46143 -14.17073 -13.81567 -13.58444 -13.46014 -13.24998 -13.09533 -13.01675 -12.98014 -12.71204 -12.55808 -12.37553 -12.20872 -12.17906 -11.98190 -11.84631 -11.63309 -11.57541 -11.44340 -11.00747 -10.65602 -9.91212 -9.41029 -9.38873 -8.03796 -5.39981 -0.02126 0.56713 1.38158 1.41460 1.48228 1.57161 1.91815 1.96265 2.47258 2.73153 3.05158 3.20095 3.25109 3.47673 3.61543 3.78062 3.84967 3.95778 4.00045 4.07904 4.23422 4.27625 4.32400 4.37073 4.53237 4.56047 4.56527 4.61326 4.73029 4.77275 4.80444 4.85431 4.86412 4.99619 5.00879 5.05971 5.08102 5.10575 5.25075 5.41589 5.73786 5.86770 5.98075 6.15005 6.19487 6.68311 7.01286 7.03583 7.75796 7.96512 9.17214 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003412 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.383774 B = 8204.001390 C = 9904.838453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 H 0.092 0.908 4 C 0.117 3.883 5 N -0.600 5.600 6 C 0.607 3.393 7 O -0.554 6.554 8 C -0.049 4.049 9 C -0.163 4.163 10 C -0.020 4.020 11 C 0.137 3.863 12 N -0.559 5.559 13 C 0.019 3.981 14 C 0.025 3.975 15 O 0.121 5.879 16 N -0.342 5.342 17 C 0.087 3.913 18 C 0.175 3.825 19 H 0.064 0.936 20 N -0.732 5.732 21 C -0.234 4.234 22 H 0.056 0.944 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.952 3.048 26 H -0.281 1.281 27 H -0.245 1.245 28 H -0.296 1.296 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.198 0.802 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.370 0.630 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 -8.796 -18.576 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.394 3.606 7 O -0.432 6.432 8 C -0.207 4.207 9 C -0.186 4.186 10 C -0.083 4.083 11 C 0.008 3.992 12 N -0.285 5.285 13 C -0.129 4.129 14 C -0.122 4.122 15 O 0.044 5.956 16 N -0.042 5.042 17 C -0.039 4.039 18 C 0.065 3.935 19 H 0.082 0.918 20 N -0.374 5.374 21 C -0.364 4.364 22 H 0.074 0.926 23 C -0.249 4.249 24 N -0.630 5.630 25 Si 0.779 3.221 26 H -0.208 1.208 27 H -0.170 1.170 28 H -0.223 1.223 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.216 0.784 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.204 0.796 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.522 -8.063 -18.435 23.187 hybrid contribution 0.462 0.366 0.742 0.947 sum 11.984 -7.697 -17.694 22.714 Atomic orbital electron populations 1.21659 0.92021 1.02554 1.02643 1.22510 0.98018 0.99457 0.92473 0.88962 1.22188 0.86551 0.94696 0.97013 1.48363 1.29857 1.42793 1.12187 1.16710 0.80702 0.78509 0.84701 1.90740 1.71132 1.65442 1.15904 1.23495 1.01355 1.04148 0.91670 1.22580 0.94159 0.99056 1.02807 1.24834 0.99926 0.98999 0.84559 1.20797 0.83898 0.90729 1.03734 1.61985 1.05610 1.20707 1.40161 1.22460 1.01188 0.96474 0.92827 1.22464 0.93105 0.95523 1.01093 1.84811 1.33296 1.41944 1.35583 1.74456 1.00298 1.11054 1.18380 1.23263 1.00820 1.00912 0.78883 1.21473 0.92404 0.93549 0.86107 0.91766 1.42498 1.88014 1.05609 1.01292 1.18963 1.41031 0.93296 0.83160 0.92574 1.25472 1.02214 1.02646 0.94588 1.69885 1.58729 1.36370 0.98047 0.85462 0.78095 0.80630 0.77919 1.20768 1.16961 1.22307 0.92814 0.90054 0.92280 0.90011 0.89872 0.78445 0.90523 0.84341 0.94066 0.90080 0.93541 0.89588 0.90477 0.94229 0.92041 0.91138 0.79584 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.16 71.98 0.66 -2.58 16 2 C -0.10 -2.97 3.20 -9.61 -0.03 -3.00 16 3 H 0.09 2.50 8.00 -2.39 -0.02 2.48 16 4 C 0.12 3.23 6.46 86.73 0.56 3.79 16 5 N -0.60 -19.90 3.33 -814.63 -2.71 -22.61 16 6 C 0.61 20.90 7.88 86.93 0.68 21.58 16 7 O -0.55 -20.44 17.28 -3.71 -0.06 -20.51 16 8 C -0.05 -1.56 7.02 42.96 0.30 -1.26 16 9 C -0.16 -3.91 10.92 22.60 0.25 -3.66 16 10 C -0.02 -0.41 6.03 25.01 0.15 -0.26 16 11 C 0.14 1.72 5.53 85.56 0.47 2.19 16 12 N -0.56 -7.71 5.01 -953.44 -4.78 -12.48 16 13 C 0.02 0.29 9.37 127.69 1.20 1.48 16 14 C 0.03 0.20 9.57 127.69 1.22 1.42 16 15 O 0.12 3.36 10.60 71.89 0.76 4.13 16 16 N -0.34 -11.35 9.31 -49.52 -0.46 -11.81 16 17 C 0.09 3.20 5.86 86.86 0.51 3.71 16 18 C 0.18 6.54 3.16 46.38 0.15 6.68 16 19 H 0.06 2.57 8.00 -2.38 -0.02 2.55 16 20 N -0.73 -32.86 5.05 -316.37 -1.60 -34.45 16 21 C -0.23 -13.01 10.44 84.03 0.88 -12.13 16 22 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 23 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 24 N -0.98 -62.20 13.97 21.65 0.30 -61.90 16 25 Si 0.95 44.40 27.74 68.60 1.90 46.30 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 32 H 0.08 2.12 7.76 -2.39 -0.02 2.10 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 36 H 0.14 1.00 8.06 -2.39 -0.02 0.98 16 37 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 1.07 8.12 -2.38 -0.02 1.05 16 39 H 0.05 0.93 6.83 -2.39 -0.02 0.92 16 40 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 41 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 42 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.07 2.86 6.24 -2.39 -0.01 2.85 16 45 H 0.37 15.76 5.62 -92.71 -0.52 15.24 16 46 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -72.85 377.45 1.23 -71.62 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.40 Total: 26.58 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 7.46 Total: 15.12 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -9.24 Total: -143.25 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.70 Total: -16.38 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -72.85 1.23 -71.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054833087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.096 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds