Wall clock time and date at job start Tue Mar 31 2020 14:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47706 * 126.51838 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00205 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00380 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.64411 * 359.69092 * 11 9 8 13 13 C 1.55134 * 104.72041 * 155.81912 * 12 11 9 14 14 H 1.08996 * 111.22488 * 279.16806 * 13 12 11 15 15 N 1.46508 * 110.90494 * 155.27473 * 13 12 11 16 16 C 1.36931 * 119.99898 * 92.97397 * 15 13 12 17 17 H 1.07994 * 120.00667 * 359.97438 * 16 15 13 18 18 C 1.38820 * 119.99632 * 179.97438 * 16 15 13 19 19 N 1.31613 * 119.99829 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47610 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47243 * 120.00167 * 20 18 16 23 23 H 1.48496 * 109.47182 * 239.99757 * 20 18 16 24 24 C 1.55157 * 101.48837 * 37.29292 * 13 12 11 25 25 H 1.08999 * 110.72007 * 82.69522 * 24 13 12 26 26 C 1.52997 * 110.87041 * 205.89804 * 24 13 12 27 27 C 1.47016 * 125.65170 * 179.97438 * 11 9 8 28 28 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 32 32 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 33 33 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 34 34 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 35 35 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 36 36 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 37 37 H 1.08002 * 127.24364 * 180.02562 * 7 6 5 38 38 H 1.09004 * 110.36717 * 274.74180 * 12 11 9 39 39 H 1.08996 * 110.37183 * 37.07303 * 12 11 9 40 40 H 0.97002 * 119.99263 * 272.97129 * 15 13 12 41 41 H 0.97007 * 119.99647 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.46639 * 175.06039 * 26 24 13 43 43 H 1.08996 * 109.46965 * 295.06311 * 26 24 13 44 44 H 1.09004 * 109.47153 * 55.06435 * 26 24 13 45 45 H 1.09006 * 109.88599 * 300.43917 * 27 11 9 46 46 H 1.09001 * 109.88546 * 61.44807 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5561 5.7947 -1.3443 10 8 5.2487 6.7262 -0.9828 11 7 3.7734 5.9203 -2.4343 12 6 2.8920 4.8743 -2.9842 13 6 1.8048 5.6499 -3.7736 14 1 1.0307 6.0316 -3.1080 15 7 1.2229 4.8106 -4.8241 16 6 0.0902 4.0840 -4.5711 17 1 -0.3740 4.1292 -3.5970 18 6 -0.4614 3.2892 -5.5666 19 7 0.1041 3.2346 -6.7538 20 14 -2.0061 2.2974 -5.2212 21 1 -2.4419 2.5314 -3.8210 22 1 -3.0838 2.7196 -6.1516 23 1 -1.7211 0.8532 -5.4167 24 6 2.6348 6.8099 -4.3844 25 1 3.1373 6.4862 -5.2958 26 6 1.7498 8.0272 -4.6596 27 6 3.6616 7.1211 -3.2752 28 7 3.8773 3.4399 -0.8644 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8567 0.6438 -0.8907 35 1 3.8574 0.6436 0.8892 36 1 5.4223 2.4147 1.7428 37 1 6.0209 4.9068 1.0769 38 1 3.4520 4.2180 -3.6504 39 1 2.4369 4.2992 -2.1780 40 1 1.6401 4.7698 -5.6989 41 1 -0.2812 2.6789 -7.4494 42 1 2.3686 8.8555 -5.0048 43 1 1.0164 7.7774 -5.4262 44 1 1.2341 8.3160 -3.7437 45 1 3.3158 7.9629 -2.6754 46 1 4.6297 7.3548 -3.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:29 Heat of formation + Delta-G solvation = 23.057419 kcal Electronic energy + Delta-G solvation = -27996.740526 eV Core-core repulsion = 24117.231439 eV Total energy + Delta-G solvation = -3879.509087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.67909 -39.52903 -38.13642 -37.38522 -34.10220 -34.00045 -32.46748 -30.80748 -30.60480 -29.58834 -27.46739 -26.84957 -26.08647 -24.25155 -23.72206 -22.23498 -21.56942 -20.86876 -19.84759 -19.12885 -17.55094 -17.17337 -16.81627 -16.47007 -16.15997 -15.95902 -15.57620 -15.27335 -14.76324 -14.39799 -14.10788 -13.82841 -13.56313 -13.40789 -13.20015 -13.02889 -12.90233 -12.66385 -12.56771 -12.19574 -11.86989 -11.81640 -11.55998 -11.51110 -11.12929 -11.03121 -10.84571 -10.59088 -10.52303 -10.20076 -9.94599 -9.90434 -9.88742 -9.71428 -9.27604 -9.10230 -8.99134 -8.23614 -7.06014 -5.85065 -3.14585 1.67162 2.11207 2.21877 3.27505 3.36093 3.41162 3.44247 3.60978 3.65576 4.27738 4.49860 4.62158 4.67741 4.72520 4.90437 4.99531 5.16892 5.21757 5.22011 5.28893 5.32047 5.39981 5.55571 5.58397 5.59848 5.63093 5.70657 5.72927 5.86171 5.92578 5.99060 6.09005 6.26674 6.31922 6.33333 6.52240 6.58896 6.62463 6.64866 6.79568 6.87438 6.93913 7.63003 7.80265 7.92885 8.32428 8.44829 9.44488 9.99498 10.34987 11.37243 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.005747 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.168314 B = 4870.984433 C = 8172.912946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.284 5.284 6 C -0.019 4.019 7 C -0.181 4.181 8 C -0.009 4.009 9 C 0.612 3.388 10 O -0.549 6.549 11 N -0.600 5.600 12 C 0.078 3.922 13 C 0.176 3.824 14 H 0.067 0.933 15 N -0.709 5.709 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.116 4.116 25 H 0.084 0.916 26 C -0.133 4.133 27 C 0.117 3.883 28 N -0.244 5.244 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.387 0.613 41 H 0.256 0.744 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -1.882 14.626 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.005 3.995 5 N -0.073 5.073 6 C -0.161 4.161 7 C -0.209 4.209 8 C -0.169 4.169 9 C 0.399 3.601 10 O -0.427 6.427 11 N -0.332 5.332 12 C -0.048 4.048 13 C 0.063 3.937 14 H 0.085 0.915 15 N -0.348 5.348 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.136 4.136 25 H 0.102 0.898 26 C -0.190 4.190 27 C -0.005 4.005 28 N -0.079 5.079 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.044 -2.227 14.162 15.558 hybrid contribution -0.294 -0.320 0.436 0.616 sum 5.750 -2.548 14.598 15.895 Atomic orbital electron populations 1.22813 0.79640 1.03096 1.00840 1.87733 1.20841 1.26605 1.95681 1.22658 0.91859 0.85803 1.02677 1.21676 0.93371 0.78427 1.06028 1.45470 1.31034 1.11657 1.19151 1.22851 0.98180 0.96603 0.98497 1.21734 1.04710 0.95950 0.98467 1.21920 1.01644 0.94024 0.99348 1.16555 0.79382 0.84993 0.79182 1.90751 1.43363 1.39732 1.68823 1.48339 1.42501 1.16344 1.26057 1.23663 0.91854 0.90597 0.98654 1.21461 0.92174 0.89179 0.90877 0.91516 1.42282 1.29840 1.51924 1.10797 1.19259 1.01512 1.19266 0.97233 0.91116 1.24730 0.99300 1.00604 0.95878 1.69664 1.41413 1.43498 1.03106 0.86173 0.83079 0.79913 0.77329 1.20597 1.21789 1.21809 1.22538 0.96055 0.97405 0.97585 0.89812 1.21646 0.99311 0.96082 1.01990 1.22001 0.99249 0.87560 0.91727 1.73836 1.21777 0.97545 1.14780 0.89228 0.93956 0.92928 0.92702 0.90527 0.87755 0.87168 0.80188 0.82097 0.91521 0.89634 0.77896 0.93444 0.93248 0.91433 0.92911 0.91508 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -4.65 10.70 -35.23 -0.38 -5.03 16 3 C 0.05 0.54 6.04 37.16 0.22 0.77 16 4 C 0.13 1.22 6.77 -4.04 -0.03 1.19 16 5 N -0.28 -3.45 3.41 -61.33 -0.21 -3.66 16 6 C -0.02 -0.20 11.40 -17.17 -0.20 -0.40 16 7 C -0.18 -2.35 10.81 -39.36 -0.43 -2.78 16 8 C -0.01 -0.15 6.97 -82.77 -0.58 -0.72 16 9 C 0.61 11.15 7.86 -12.39 -0.10 11.06 16 10 O -0.55 -10.98 17.25 5.30 0.09 -10.89 16 11 N -0.60 -10.59 3.32 -171.54 -0.57 -11.16 16 12 C 0.08 1.45 5.86 -2.41 -0.01 1.44 16 13 C 0.18 3.40 3.18 -65.66 -0.21 3.19 16 14 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 15 N -0.71 -16.76 5.24 -51.23 -0.27 -17.03 16 16 C -0.24 -6.34 9.96 -15.06 -0.15 -6.49 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 20 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.12 -1.89 3.18 -88.79 -0.28 -2.17 16 25 H 0.08 1.40 8.00 -51.93 -0.42 0.99 16 26 C -0.13 -1.94 9.14 37.16 0.34 -1.60 16 27 C 0.12 1.87 6.46 -3.07 -0.02 1.85 16 28 N -0.24 -3.81 8.78 33.42 0.29 -3.52 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.11 0.70 8.04 -51.93 -0.42 0.29 16 36 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.65 6.19 -51.93 -0.32 1.32 16 40 H 0.39 9.78 7.76 -40.82 -0.32 9.46 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -32.25 384.34 -7.30 -39.55 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.33 Total: 9.34 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.42 Total: 6.45 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.03 Total: -61.61 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.29 Total: -15.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.25 -7.30 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.604 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds