Wall clock time and date at job start Tue Mar 31 2020 14:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47706 * 126.51838 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00205 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00380 * 180.02562 * 9 8 7 12 12 C 1.47423 * 125.64411 * 359.69092 * 11 9 8 13 13 C 1.55134 * 104.72041 * 155.81912 * 12 11 9 14 14 H 1.08996 * 111.22488 * 279.16806 * 13 12 11 15 15 N 1.46508 * 110.90494 * 155.27473 * 13 12 11 16 16 C 1.36931 * 119.99898 * 92.97397 * 15 13 12 17 17 H 1.07994 * 120.00667 * 359.97438 * 16 15 13 18 18 C 1.38820 * 119.99632 * 179.97438 * 16 15 13 19 19 N 1.31613 * 119.99829 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47610 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47243 * 120.00167 * 20 18 16 23 23 H 1.48496 * 109.47182 * 239.99757 * 20 18 16 24 24 C 1.55157 * 101.48837 * 37.29292 * 13 12 11 25 25 H 1.08999 * 110.72007 * 82.69522 * 24 13 12 26 26 C 1.52997 * 110.87041 * 205.89804 * 24 13 12 27 27 C 1.47016 * 125.65170 * 179.97438 * 11 9 8 28 28 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 32 32 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 33 33 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 34 34 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 35 35 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 36 36 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 37 37 H 1.08002 * 127.24364 * 180.02562 * 7 6 5 38 38 H 1.09004 * 110.36717 * 274.74180 * 12 11 9 39 39 H 1.08996 * 110.37183 * 37.07303 * 12 11 9 40 40 H 0.97002 * 119.99263 * 272.97129 * 15 13 12 41 41 H 0.97007 * 119.99647 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.46639 * 175.06039 * 26 24 13 43 43 H 1.08996 * 109.46965 * 295.06311 * 26 24 13 44 44 H 1.09004 * 109.47153 * 55.06435 * 26 24 13 45 45 H 1.09006 * 109.88599 * 300.43917 * 27 11 9 46 46 H 1.09001 * 109.88546 * 61.44807 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5561 5.7947 -1.3443 10 8 5.2487 6.7262 -0.9828 11 7 3.7734 5.9203 -2.4343 12 6 2.8920 4.8743 -2.9842 13 6 1.8048 5.6499 -3.7736 14 1 1.0307 6.0316 -3.1080 15 7 1.2229 4.8106 -4.8241 16 6 0.0902 4.0840 -4.5711 17 1 -0.3740 4.1292 -3.5970 18 6 -0.4614 3.2892 -5.5666 19 7 0.1041 3.2346 -6.7538 20 14 -2.0061 2.2974 -5.2212 21 1 -2.4419 2.5314 -3.8210 22 1 -3.0838 2.7196 -6.1516 23 1 -1.7211 0.8532 -5.4167 24 6 2.6348 6.8099 -4.3844 25 1 3.1373 6.4862 -5.2958 26 6 1.7498 8.0272 -4.6596 27 6 3.6616 7.1211 -3.2752 28 7 3.8773 3.4399 -0.8644 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8567 0.6438 -0.8907 35 1 3.8574 0.6436 0.8892 36 1 5.4223 2.4147 1.7428 37 1 6.0209 4.9068 1.0769 38 1 3.4520 4.2180 -3.6504 39 1 2.4369 4.2992 -2.1780 40 1 1.6401 4.7698 -5.6989 41 1 -0.2812 2.6789 -7.4494 42 1 2.3686 8.8555 -5.0048 43 1 1.0164 7.7774 -5.4262 44 1 1.2341 8.3160 -3.7437 45 1 3.3158 7.9629 -2.6754 46 1 4.6297 7.3548 -3.7183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054884570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:28 Heat of formation + Delta-G solvation = 1.128480 kcal Electronic energy + Delta-G solvation = -27997.691436 eV Core-core repulsion = 24117.231439 eV Total energy + Delta-G solvation = -3880.459997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.68193 -40.95703 -39.06077 -38.84433 -35.88682 -35.01667 -33.93312 -32.53989 -31.69278 -30.56603 -29.15735 -27.95263 -27.09712 -25.92748 -25.03268 -23.41739 -22.73366 -22.06303 -21.32571 -20.35761 -19.15216 -18.54779 -17.96755 -17.55939 -17.33101 -17.08702 -16.80582 -16.49756 -16.24542 -15.64305 -15.46301 -15.32514 -14.80352 -14.56625 -14.45612 -14.37484 -14.27786 -14.05540 -13.87615 -13.29465 -13.06594 -13.02454 -12.90973 -12.88434 -12.64457 -12.37202 -12.24989 -12.13451 -12.02703 -11.81371 -11.65062 -11.42347 -11.28301 -10.91431 -10.81199 -10.31345 -10.10241 -9.67913 -9.03831 -7.94771 -5.24013 0.49607 1.17623 1.32718 1.46559 1.47367 1.56641 1.95901 2.32752 2.55359 2.75022 3.29410 3.37074 3.52591 3.77733 3.80247 3.81195 3.95498 3.98291 4.09308 4.17094 4.19594 4.37125 4.40056 4.46027 4.47131 4.58890 4.61289 4.65434 4.66620 4.73986 4.77533 4.79937 4.90216 4.96217 5.10953 5.11883 5.17998 5.31805 5.43034 5.46438 5.53473 5.84324 5.97817 6.25685 6.40080 6.79940 7.10731 7.33502 8.04145 8.30193 9.28460 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007623 B = 0.005747 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3672.168314 B = 4870.984433 C = 8172.912946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.051 3.949 4 C 0.125 3.875 5 N -0.281 5.281 6 C 0.011 3.989 7 C -0.197 4.197 8 C -0.042 4.042 9 C 0.608 3.392 10 O -0.572 6.572 11 N -0.603 5.603 12 C 0.099 3.901 13 C 0.171 3.829 14 H 0.063 0.937 15 N -0.717 5.717 16 C -0.237 4.237 17 H 0.074 0.926 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.105 4.105 25 H 0.079 0.921 26 C -0.127 4.127 27 C 0.118 3.882 28 N -0.277 5.277 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.235 0.765 37 H 0.172 0.828 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 -2.544 17.140 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.027 4.027 4 C 0.005 3.995 5 N -0.071 5.071 6 C -0.131 4.131 7 C -0.225 4.225 8 C -0.201 4.201 9 C 0.396 3.604 10 O -0.452 6.452 11 N -0.335 5.335 12 C -0.027 4.027 13 C 0.060 3.940 14 H 0.081 0.919 15 N -0.356 5.356 16 C -0.369 4.369 17 H 0.092 0.908 18 C -0.260 4.260 19 N -0.616 5.616 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.221 1.221 24 C -0.125 4.125 25 H 0.097 0.903 26 C -0.184 4.184 27 C -0.004 4.004 28 N -0.114 5.114 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.189 0.811 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.466 -2.861 16.711 18.146 hybrid contribution -0.381 -0.138 -0.257 0.480 sum 6.085 -2.999 16.454 17.798 Atomic orbital electron populations 1.22958 0.79004 1.04337 1.00634 1.87716 1.21639 1.26688 1.95643 1.22577 0.93214 0.85496 1.01364 1.21926 0.91987 0.77436 1.08116 1.45746 1.30923 1.11720 1.18661 1.23585 0.95749 0.95589 0.98184 1.22008 1.05114 0.97537 0.97839 1.21880 1.03646 0.93672 1.00869 1.16922 0.78756 0.85677 0.79028 1.90718 1.44225 1.40792 1.69424 1.48371 1.42357 1.16415 1.26344 1.23213 0.91355 0.90315 0.97806 1.21578 0.92413 0.89793 0.90176 0.91871 1.42358 1.29516 1.52424 1.11275 1.19574 1.01738 1.18498 0.97063 0.90777 1.25458 1.02367 1.02265 0.95879 1.69811 1.43050 1.44783 1.03973 0.85206 0.79593 0.78063 0.77739 1.18940 1.22156 1.22138 1.22441 0.95786 0.96880 0.97344 0.90304 1.21601 0.98976 0.95986 1.01841 1.22080 0.99535 0.87333 0.91452 1.73759 1.22797 0.98264 1.16552 0.87348 0.92388 0.94910 0.91767 0.94146 0.88138 0.82606 0.74899 0.81073 0.93476 0.90341 0.79085 0.94019 0.90520 0.93213 0.92198 0.90373 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.40 -8.94 10.70 -148.98 -1.59 -10.53 16 3 C 0.05 1.12 6.04 71.98 0.43 1.55 16 4 C 0.12 2.11 6.77 86.38 0.58 2.69 16 5 N -0.28 -6.25 3.41 -347.95 -1.19 -7.44 16 6 C 0.01 0.19 11.40 83.54 0.95 1.14 16 7 C -0.20 -4.77 10.81 22.41 0.24 -4.53 16 8 C -0.04 -1.35 6.97 42.45 0.30 -1.05 16 9 C 0.61 22.31 7.86 86.75 0.68 22.99 16 10 O -0.57 -22.89 17.25 -3.95 -0.07 -22.96 16 11 N -0.60 -21.48 3.32 -814.90 -2.71 -24.19 16 12 C 0.10 3.80 5.86 86.93 0.51 4.31 16 13 C 0.17 6.74 3.18 46.46 0.15 6.89 16 14 H 0.06 2.54 8.00 -2.39 -0.02 2.52 16 15 N -0.72 -34.80 5.24 -316.00 -1.66 -36.46 16 16 C -0.24 -12.63 9.96 84.04 0.84 -11.80 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 18 C -0.07 -3.72 5.50 84.87 0.47 -3.25 16 19 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 20 Si 0.96 44.61 29.55 68.60 2.03 46.64 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 C -0.10 -3.40 3.18 -9.61 -0.03 -3.43 16 25 H 0.08 2.66 8.00 -2.39 -0.02 2.64 16 26 C -0.13 -3.57 9.14 71.98 0.66 -2.91 16 27 C 0.12 3.69 6.46 86.73 0.56 4.25 16 28 N -0.28 -8.60 8.78 -48.18 -0.42 -9.03 16 29 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.17 8.08 -2.38 -0.02 1.15 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.16 1.24 8.04 -2.38 -0.02 1.22 16 36 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 3.13 6.19 -2.39 -0.01 3.12 16 40 H 0.38 19.70 7.76 -92.71 -0.72 18.98 16 41 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 42 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.08 2.28 7.82 -2.38 -0.02 2.27 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.99 384.34 2.52 -69.47 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.26 Total: 33.05 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 7.59 Total: 18.63 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.69 Total: -134.29 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.66 Total: -33.50 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.99 2.52 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.602 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds