Wall clock time and date at job start Tue Mar 31 2020 14:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00113 * 2 1 4 4 C 1.52997 * 109.47140 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47496 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88729 * 124.97437 * 5 4 3 7 7 C 1.35370 * 107.22685 * 179.73017 * 6 5 4 8 8 C 1.41498 * 105.50196 * 0.41510 * 7 6 5 9 9 C 1.47712 * 126.51515 * 179.84990 * 8 7 6 10 10 O 1.21573 * 119.99911 * 359.70181 * 9 8 7 11 11 N 1.34774 * 120.00148 * 179.71168 * 9 8 7 12 12 C 1.47425 * 125.65138 * 179.97438 * 11 9 8 13 13 C 1.54908 * 104.92961 * 204.15299 * 12 11 9 14 14 H 1.09008 * 111.00494 * 81.01141 * 13 12 11 15 15 C 1.52999 * 111.00368 * 204.85960 * 13 12 11 16 16 C 1.55154 * 101.58289 * 322.93718 * 13 12 11 17 17 H 1.08997 * 110.72022 * 277.13434 * 16 13 12 18 18 N 1.46497 * 110.72021 * 153.86481 * 16 13 12 19 19 C 1.36940 * 120.00145 * 155.00143 * 18 16 13 20 20 H 1.08003 * 119.99723 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00230 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47287 * 89.99865 * 23 21 19 25 25 H 1.48502 * 109.47166 * 209.99823 * 23 21 19 26 26 H 1.48501 * 109.47138 * 329.99950 * 23 21 19 27 27 C 1.47290 * 125.79121 * 359.97438 * 11 9 8 28 28 N 1.28473 * 124.88331 * 304.97876 * 5 4 3 29 29 H 1.09004 * 109.46405 * 299.99739 * 1 2 3 30 30 H 1.08997 * 109.47100 * 59.99105 * 1 2 3 31 31 H 1.08993 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46889 * 60.00521 * 3 2 1 33 33 H 1.08999 * 109.47290 * 300.00473 * 3 2 1 34 34 H 1.08998 * 109.47403 * 59.99948 * 4 3 2 35 35 H 1.09008 * 109.47376 * 300.00288 * 4 3 2 36 36 H 1.07997 * 126.38278 * 359.97438 * 6 5 4 37 37 H 1.07997 * 127.24560 * 180.25673 * 7 6 5 38 38 H 1.09002 * 110.36696 * 85.25946 * 12 11 9 39 39 H 1.08995 * 110.36608 * 323.04783 * 12 11 9 40 40 H 1.09001 * 109.47276 * 58.55057 * 15 13 12 41 41 H 1.09003 * 109.46690 * 178.54597 * 15 13 12 42 42 H 1.08998 * 109.47248 * 298.54758 * 15 13 12 43 43 H 0.96996 * 120.00123 * 334.99768 * 18 16 13 44 44 H 0.97000 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.85762 * 59.50172 * 27 11 9 46 46 H 1.08995 * 110.00297 * 298.43119 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1315 2.5229 0.0000 6 6 5.0260 2.9696 0.9076 7 6 5.3401 4.2418 0.5682 8 6 4.5729 4.5257 -0.5863 9 6 4.5585 5.7949 -1.3418 10 8 5.2511 6.7260 -0.9794 11 7 3.7774 5.9209 -2.4329 12 6 3.6663 7.1253 -3.2757 13 6 2.2776 7.0119 -3.9529 14 1 1.4867 7.3446 -3.2805 15 6 2.2427 7.7948 -5.2669 16 6 2.1813 5.4852 -4.2123 17 1 2.7031 5.2164 -5.1307 18 7 0.7817 5.0557 -4.2650 19 6 0.4373 3.9279 -4.9611 20 1 1.1975 3.3552 -5.4716 21 6 -0.8889 3.5212 -5.0115 22 7 -1.8154 4.2194 -4.3899 23 14 -1.3587 1.9830 -5.9617 24 1 -1.2906 0.8045 -5.0607 25 1 -2.7411 2.1272 -6.4846 26 1 -0.4179 1.7946 -7.0951 27 6 2.8922 4.8803 -2.9833 28 7 3.8781 3.4404 -0.8629 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8568 0.6439 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 5.4205 2.4139 1.7454 37 1 6.0291 4.9021 1.0740 38 1 4.4553 7.1361 -4.0277 39 1 3.7165 8.0242 -2.6614 40 1 3.0137 7.4145 -5.9371 41 1 1.2649 7.6770 -5.7340 42 1 2.4246 8.8505 -5.0658 43 1 0.0989 5.5702 -3.8068 44 1 -2.7422 3.9354 -4.4254 45 1 2.1551 4.5876 -2.2355 46 1 3.4791 4.0126 -3.2844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:32 Heat of formation + Delta-G solvation = 21.642168 kcal Electronic energy + Delta-G solvation = -28019.260297 eV Core-core repulsion = 24139.689840 eV Total energy + Delta-G solvation = -3879.570457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.64940 -39.50902 -38.07272 -37.37954 -34.07854 -33.97745 -32.44702 -30.77834 -30.60068 -29.55018 -27.46648 -26.81108 -26.05139 -24.23224 -23.70292 -22.20334 -21.53263 -20.85078 -19.88641 -19.07896 -17.49569 -17.13514 -16.83933 -16.41890 -16.10874 -15.82932 -15.70541 -15.07478 -14.83431 -14.48259 -14.00332 -13.88658 -13.52401 -13.33640 -13.24438 -13.05507 -12.95507 -12.56549 -12.31542 -12.12064 -12.04484 -11.76732 -11.47330 -11.43572 -11.13305 -11.01392 -10.83562 -10.59616 -10.51826 -10.24156 -10.00341 -9.87284 -9.83769 -9.69652 -9.25016 -9.07799 -8.98122 -8.21649 -7.07032 -5.84611 -3.14389 1.70101 2.13458 2.24856 3.28979 3.37109 3.43829 3.44761 3.63051 3.69658 4.30621 4.51348 4.65833 4.70076 4.75162 4.93183 5.00895 5.21287 5.24715 5.26523 5.28730 5.39831 5.45009 5.59521 5.62323 5.64474 5.68607 5.71107 5.75054 5.86389 5.92233 5.99341 6.05249 6.26412 6.32313 6.36462 6.51943 6.63161 6.64303 6.67982 6.74621 6.90575 6.97603 7.63964 7.82489 7.94435 8.32793 8.45912 9.44893 9.99708 10.35119 11.37414 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007603 B = 0.005794 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.918508 B = 4831.589903 C = 8121.494312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.283 5.283 6 C -0.020 4.020 7 C -0.181 4.181 8 C -0.011 4.011 9 C 0.613 3.387 10 O -0.550 6.550 11 N -0.601 5.601 12 C 0.114 3.886 13 C -0.115 4.115 14 H 0.083 0.917 15 C -0.132 4.132 16 C 0.174 3.826 17 H 0.067 0.933 18 N -0.710 5.710 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.086 3.914 28 N -0.241 5.241 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.426 -3.675 9.747 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.030 4.030 4 C 0.006 3.994 5 N -0.073 5.073 6 C -0.162 4.162 7 C -0.209 4.209 8 C -0.171 4.171 9 C 0.400 3.600 10 O -0.427 6.427 11 N -0.333 5.333 12 C -0.008 4.008 13 C -0.135 4.135 14 H 0.101 0.899 15 C -0.189 4.189 16 C 0.062 3.938 17 H 0.085 0.915 18 N -0.349 5.349 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.735 3.265 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.040 4.040 28 N -0.077 5.077 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.053 -4.097 9.111 14.173 hybrid contribution -0.245 -0.417 0.392 0.623 sum 9.808 -4.513 9.504 14.383 Atomic orbital electron populations 1.22812 0.79519 1.02985 1.01044 1.87714 1.20944 1.26635 1.95719 1.22658 0.91701 0.85789 1.02853 1.21670 0.93473 0.78373 1.05902 1.45445 1.31101 1.11674 1.19090 1.22846 0.98153 0.96707 0.98509 1.21734 1.04652 0.95976 0.98524 1.21915 1.01568 0.94118 0.99498 1.16536 0.79379 0.85024 0.79038 1.90749 1.43416 1.39778 1.68801 1.48411 1.42391 1.16392 1.26087 1.22281 0.97401 0.87954 0.93192 1.22665 0.95695 0.97745 0.97431 0.89891 1.21592 1.02760 0.98554 0.96039 1.21314 0.87641 0.90281 0.94547 0.91456 1.42333 1.01149 1.30035 1.61414 1.19252 0.92306 1.01278 1.24414 0.91056 1.24719 0.95842 0.99106 1.00849 1.69663 1.00617 1.40242 1.47326 0.86239 0.77630 0.83007 0.79611 1.21737 1.21772 1.20663 1.23353 0.92455 0.89919 0.98247 1.73840 1.21532 0.97479 1.14847 0.93927 0.92769 0.89314 0.92702 0.90406 0.87866 0.87218 0.80206 0.82125 0.91510 0.90838 0.92817 0.91447 0.93229 0.77939 0.93467 0.90548 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -4.94 10.70 -35.23 -0.38 -5.32 16 3 C 0.05 0.58 6.04 37.16 0.22 0.81 16 4 C 0.13 1.27 6.77 -4.05 -0.03 1.24 16 5 N -0.28 -3.55 3.41 -61.33 -0.21 -3.76 16 6 C -0.02 -0.22 11.40 -17.16 -0.20 -0.41 16 7 C -0.18 -2.41 10.81 -39.36 -0.43 -2.83 16 8 C -0.01 -0.17 6.98 -82.77 -0.58 -0.75 16 9 C 0.61 11.28 7.86 -12.39 -0.10 11.18 16 10 O -0.55 -11.06 17.18 5.30 0.09 -10.97 16 11 N -0.60 -10.63 3.34 -171.46 -0.57 -11.20 16 12 C 0.11 1.80 6.37 -2.53 -0.02 1.79 16 13 C -0.12 -1.88 3.27 -88.47 -0.29 -2.17 16 14 H 0.08 1.43 8.01 -51.92 -0.42 1.02 16 15 C -0.13 -1.90 9.29 37.16 0.35 -1.55 16 16 C 0.17 3.35 3.08 -66.10 -0.20 3.15 16 17 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 18 N -0.71 -16.76 5.15 -51.65 -0.27 -17.02 16 19 C -0.24 -6.33 9.96 -15.06 -0.15 -6.48 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -26.85 13.06 55.49 0.72 -26.13 16 23 Si 0.90 21.52 29.55 -169.99 -5.02 16.50 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C 0.09 1.60 5.31 -2.92 -0.02 1.59 16 28 N -0.24 -3.86 9.22 33.42 0.31 -3.55 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 0.74 8.04 -51.92 -0.42 0.32 16 36 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 39 H 0.07 1.13 8.03 -51.93 -0.42 0.72 16 40 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.39 9.80 7.76 -40.82 -0.32 9.49 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.08 1.59 7.55 -51.93 -0.39 1.19 16 46 H 0.06 1.18 7.78 -51.93 -0.40 0.77 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -32.07 385.19 -7.32 -39.39 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.39 Total: 9.56 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.41 Total: 6.70 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.01 Total: -61.66 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.07 -7.32 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.028 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds