Wall clock time and date at job start Tue Mar 31 2020 14:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 114.00113 * 2 1 4 4 C 1.52997 * 109.47140 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47496 * 180.02562 * 4 3 2 6 6 C 1.35036 * 124.88729 * 124.97437 * 5 4 3 7 7 C 1.35370 * 107.22685 * 179.73017 * 6 5 4 8 8 C 1.41498 * 105.50196 * 0.41510 * 7 6 5 9 9 C 1.47712 * 126.51515 * 179.84990 * 8 7 6 10 10 O 1.21573 * 119.99911 * 359.70181 * 9 8 7 11 11 N 1.34774 * 120.00148 * 179.71168 * 9 8 7 12 12 C 1.47425 * 125.65138 * 179.97438 * 11 9 8 13 13 C 1.54908 * 104.92961 * 204.15299 * 12 11 9 14 14 H 1.09008 * 111.00494 * 81.01141 * 13 12 11 15 15 C 1.52999 * 111.00368 * 204.85960 * 13 12 11 16 16 C 1.55154 * 101.58289 * 322.93718 * 13 12 11 17 17 H 1.08997 * 110.72022 * 277.13434 * 16 13 12 18 18 N 1.46497 * 110.72021 * 153.86481 * 16 13 12 19 19 C 1.36940 * 120.00145 * 155.00143 * 18 16 13 20 20 H 1.08003 * 119.99723 * 359.97438 * 19 18 16 21 21 C 1.38807 * 120.00230 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00088 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00129 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47287 * 89.99865 * 23 21 19 25 25 H 1.48502 * 109.47166 * 209.99823 * 23 21 19 26 26 H 1.48501 * 109.47138 * 329.99950 * 23 21 19 27 27 C 1.47290 * 125.79121 * 359.97438 * 11 9 8 28 28 N 1.28473 * 124.88331 * 304.97876 * 5 4 3 29 29 H 1.09004 * 109.46405 * 299.99739 * 1 2 3 30 30 H 1.08997 * 109.47100 * 59.99105 * 1 2 3 31 31 H 1.08993 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46889 * 60.00521 * 3 2 1 33 33 H 1.08999 * 109.47290 * 300.00473 * 3 2 1 34 34 H 1.08998 * 109.47403 * 59.99948 * 4 3 2 35 35 H 1.09008 * 109.47376 * 300.00288 * 4 3 2 36 36 H 1.07997 * 126.38278 * 359.97438 * 6 5 4 37 37 H 1.07997 * 127.24560 * 180.25673 * 7 6 5 38 38 H 1.09002 * 110.36696 * 85.25946 * 12 11 9 39 39 H 1.08995 * 110.36608 * 323.04783 * 12 11 9 40 40 H 1.09001 * 109.47276 * 58.55057 * 15 13 12 41 41 H 1.09003 * 109.46690 * 178.54597 * 15 13 12 42 42 H 1.08998 * 109.47248 * 298.54758 * 15 13 12 43 43 H 0.96996 * 120.00123 * 334.99768 * 18 16 13 44 44 H 0.97000 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.85762 * 59.50172 * 27 11 9 46 46 H 1.08995 * 110.00297 * 298.43119 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1315 2.5229 0.0000 6 6 5.0260 2.9696 0.9076 7 6 5.3401 4.2418 0.5682 8 6 4.5729 4.5257 -0.5863 9 6 4.5585 5.7949 -1.3418 10 8 5.2511 6.7260 -0.9794 11 7 3.7774 5.9209 -2.4329 12 6 3.6663 7.1253 -3.2757 13 6 2.2776 7.0119 -3.9529 14 1 1.4867 7.3446 -3.2805 15 6 2.2427 7.7948 -5.2669 16 6 2.1813 5.4852 -4.2123 17 1 2.7031 5.2164 -5.1307 18 7 0.7817 5.0557 -4.2650 19 6 0.4373 3.9279 -4.9611 20 1 1.1975 3.3552 -5.4716 21 6 -0.8889 3.5212 -5.0115 22 7 -1.8154 4.2194 -4.3899 23 14 -1.3587 1.9830 -5.9617 24 1 -1.2906 0.8045 -5.0607 25 1 -2.7411 2.1272 -6.4846 26 1 -0.4179 1.7946 -7.0951 27 6 2.8922 4.8803 -2.9833 28 7 3.8781 3.4404 -0.8629 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8568 0.6439 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 5.4205 2.4139 1.7454 37 1 6.0291 4.9021 1.0740 38 1 4.4553 7.1361 -4.0277 39 1 3.7165 8.0242 -2.6614 40 1 3.0137 7.4145 -5.9371 41 1 1.2649 7.6770 -5.7340 42 1 2.4246 8.8505 -5.0658 43 1 0.0989 5.5702 -3.8068 44 1 -2.7422 3.9354 -4.4254 45 1 2.1551 4.5876 -2.2355 46 1 3.4791 4.0126 -3.2844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054884572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:31 Heat of formation + Delta-G solvation = -0.239935 kcal Electronic energy + Delta-G solvation = -28020.209176 eV Core-core repulsion = 24139.689840 eV Total energy + Delta-G solvation = -3880.519336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.67715 -40.94290 -39.07556 -38.84873 -35.87006 -35.02031 -33.91860 -32.52490 -31.68977 -30.57719 -29.15699 -27.95724 -27.11022 -25.93140 -25.03144 -23.41700 -22.69514 -22.05169 -21.38522 -20.31338 -19.10926 -18.54233 -18.03374 -17.55236 -17.23789 -17.09175 -16.89033 -16.55552 -16.11796 -15.83875 -15.39089 -15.35528 -14.84312 -14.66724 -14.53610 -14.25649 -14.13775 -14.03561 -13.68424 -13.45172 -13.04661 -13.01538 -12.87185 -12.83940 -12.66547 -12.40572 -12.23346 -12.17256 -12.05075 -11.75716 -11.68886 -11.49074 -11.26523 -10.91783 -10.84276 -10.31073 -10.10492 -9.65634 -9.05506 -7.94190 -5.23617 0.50224 1.17007 1.33034 1.47500 1.48104 1.56504 1.96355 2.32839 2.55683 2.72540 3.29422 3.37372 3.52765 3.76762 3.79036 3.81693 3.91104 3.97936 4.08957 4.18178 4.23119 4.37062 4.37493 4.43990 4.46506 4.57153 4.63935 4.65526 4.65873 4.73804 4.77436 4.77675 4.90038 4.96001 5.12009 5.15283 5.20018 5.33177 5.38942 5.49969 5.54659 5.82598 5.94802 6.25798 6.40552 6.80145 7.10636 7.33749 8.04455 8.30029 9.28714 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007603 B = 0.005794 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.918508 B = 4831.589903 C = 8121.494312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.127 3.873 5 N -0.282 5.282 6 C 0.010 3.990 7 C -0.198 4.198 8 C -0.044 4.044 9 C 0.608 3.392 10 O -0.573 6.573 11 N -0.604 5.604 12 C 0.116 3.884 13 C -0.104 4.104 14 H 0.070 0.930 15 C -0.125 4.125 16 C 0.170 3.830 17 H 0.071 0.929 18 N -0.718 5.718 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.066 4.066 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.109 3.891 28 N -0.276 5.276 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.235 0.765 37 H 0.172 0.828 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.375 0.625 44 H 0.250 0.750 45 H 0.050 0.950 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 -4.966 10.675 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.071 5.071 6 C -0.132 4.132 7 C -0.226 4.226 8 C -0.203 4.203 9 C 0.396 3.604 10 O -0.452 6.452 11 N -0.336 5.336 12 C -0.006 4.006 13 C -0.124 4.124 14 H 0.088 0.912 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.089 0.911 18 N -0.356 5.356 19 C -0.370 4.370 20 H 0.094 0.906 21 C -0.259 4.259 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.195 1.195 27 C -0.017 4.017 28 N -0.112 5.112 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.174 0.826 36 H 0.251 0.749 37 H 0.189 0.811 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.882 -5.382 10.020 16.448 hybrid contribution -0.753 -0.042 0.176 0.775 sum 11.128 -5.424 10.196 16.038 Atomic orbital electron populations 1.22928 0.79097 1.04308 1.00396 1.87700 1.21478 1.26595 1.95624 1.22565 0.93514 0.85443 1.01099 1.21916 0.91561 0.77454 1.08291 1.45729 1.31004 1.11749 1.18654 1.23587 0.95703 0.95708 0.98191 1.22012 1.05076 0.97553 0.97923 1.21907 1.03482 0.93819 1.01051 1.16899 0.78853 0.85681 0.78919 1.90714 1.44336 1.40799 1.69362 1.48458 1.42128 1.16594 1.26395 1.22384 0.97291 0.87536 0.93393 1.22562 0.95795 0.95606 0.98441 0.91155 1.21547 1.02096 0.99907 0.94720 1.21480 0.85444 0.92463 0.94717 0.91120 1.42416 1.02669 1.29445 1.61115 1.19580 0.92382 1.01584 1.23414 0.90622 1.25432 0.95999 1.02005 1.02430 1.69810 1.00563 1.41983 1.49297 0.85281 0.76986 0.79773 0.78606 1.21544 1.22343 1.19452 1.22874 0.91803 0.89931 0.97048 1.73778 1.22508 0.98239 1.16694 0.92649 0.95373 0.87052 0.92251 0.94478 0.87727 0.82565 0.74879 0.81071 0.89652 0.90220 0.91582 0.93335 0.90612 0.79287 0.94070 0.93111 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -9.57 10.70 -148.98 -1.59 -11.17 16 3 C 0.05 1.24 6.04 71.98 0.44 1.67 16 4 C 0.13 2.25 6.77 86.38 0.58 2.83 16 5 N -0.28 -6.51 3.41 -347.96 -1.19 -7.70 16 6 C 0.01 0.18 11.40 83.54 0.95 1.13 16 7 C -0.20 -4.94 10.81 22.41 0.24 -4.70 16 8 C -0.04 -1.44 6.98 42.46 0.30 -1.15 16 9 C 0.61 22.63 7.86 86.75 0.68 23.31 16 10 O -0.57 -23.12 17.18 -3.94 -0.07 -23.19 16 11 N -0.60 -21.62 3.34 -814.66 -2.72 -24.33 16 12 C 0.12 3.57 6.37 86.85 0.55 4.12 16 13 C -0.10 -3.38 3.27 -9.40 -0.03 -3.41 16 14 H 0.07 2.48 8.01 -2.38 -0.02 2.46 16 15 C -0.13 -3.45 9.29 71.98 0.67 -2.78 16 16 C 0.17 6.61 3.08 46.18 0.14 6.75 16 17 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 18 N -0.72 -34.88 5.15 -317.34 -1.63 -36.51 16 19 C -0.24 -12.69 9.96 84.03 0.84 -11.85 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 22 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 23 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.11 4.21 5.31 86.68 0.46 4.67 16 28 N -0.28 -8.81 9.22 -48.18 -0.44 -9.26 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.16 1.35 8.04 -2.38 -0.02 1.33 16 36 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 38 H 0.09 2.34 8.04 -2.39 -0.02 2.32 16 39 H 0.08 2.39 8.03 -2.39 -0.02 2.37 16 40 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.37 19.80 7.76 -92.71 -0.72 19.08 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 45 H 0.05 2.22 7.55 -2.38 -0.02 2.20 16 46 H 0.06 2.20 7.78 -2.39 -0.02 2.18 16 Total: -1.00 -72.15 385.19 2.46 -69.69 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: 0.25 Total: 33.40 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 7.54 Total: 19.31 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -5.70 Total: -134.88 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.66 Total: -34.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.15 2.46 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.451 kcal (2) G-P(sol) polarization free energy of solvation -72.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds