Wall clock time and date at job start Tue Mar 31 2020 14:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00009 * 2 1 4 4 C 1.53003 * 109.47404 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47418 * 180.02562 * 4 3 2 6 6 C 1.35030 * 124.88861 * 125.01938 * 5 4 3 7 7 C 1.35369 * 107.23009 * 179.76251 * 6 5 4 8 8 C 1.41494 * 105.50206 * 0.35758 * 7 6 5 9 9 C 1.47710 * 126.51946 * 179.89779 * 8 7 6 10 10 O 1.21566 * 119.99890 * 359.71990 * 9 8 7 11 11 N 1.34780 * 120.00485 * 179.71180 * 9 8 7 12 12 C 1.47419 * 125.65139 * 179.97438 * 11 9 8 13 13 C 1.54905 * 104.92834 * 155.80015 * 12 11 9 14 14 H 1.09004 * 111.00578 * 278.99532 * 13 12 11 15 15 C 1.53000 * 111.00859 * 155.14142 * 13 12 11 16 16 C 1.55448 * 101.45165 * 37.00468 * 13 12 11 17 17 H 1.08997 * 110.85990 * 206.07553 * 16 13 12 18 18 N 1.46499 * 110.70397 * 82.89196 * 16 13 12 19 19 C 1.36944 * 120.00006 * 160.00311 * 18 16 13 20 20 H 1.08004 * 119.99697 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00087 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00181 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99831 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47286 * 60.00258 * 23 21 19 25 25 H 1.48506 * 109.47055 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47278 * 299.99788 * 23 21 19 27 27 C 1.47026 * 125.64285 * 359.97438 * 11 9 8 28 28 N 1.28471 * 124.88296 * 305.02033 * 5 4 3 29 29 H 1.09007 * 109.46934 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47591 * 300.00022 * 1 2 3 31 31 H 1.09003 * 109.47143 * 60.00518 * 1 2 3 32 32 H 1.08997 * 109.47385 * 59.99921 * 3 2 1 33 33 H 1.09003 * 109.47384 * 300.00042 * 3 2 1 34 34 H 1.08997 * 109.47077 * 59.99533 * 4 3 2 35 35 H 1.09001 * 109.46351 * 299.99869 * 4 3 2 36 36 H 1.07998 * 126.38615 * 359.96499 * 6 5 4 37 37 H 1.07995 * 127.24930 * 180.24453 * 7 6 5 38 38 H 1.09002 * 110.36926 * 274.69484 * 12 11 9 39 39 H 1.08995 * 110.36556 * 36.90768 * 12 11 9 40 40 H 1.09000 * 109.47194 * 61.45060 * 15 13 12 41 41 H 1.09001 * 109.47578 * 181.45505 * 15 13 12 42 42 H 1.09003 * 109.46933 * 301.45233 * 15 13 12 43 43 H 0.97000 * 120.00326 * 339.99790 * 18 16 13 44 44 H 0.96997 * 120.00069 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.88266 * 300.48971 * 27 11 9 46 46 H 1.09000 * 109.88221 * 61.65788 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0264 2.9694 0.9070 7 6 5.3397 4.2421 0.5683 8 6 4.5724 4.5260 -0.5861 9 6 4.5578 5.7952 -1.3416 10 8 5.2506 6.7261 -0.9795 11 7 3.7765 5.9211 -2.4326 12 6 3.6653 7.1255 -3.2754 13 6 3.1941 6.6044 -4.6560 14 1 4.0322 6.2132 -5.2328 15 6 2.4592 7.6981 -5.4335 16 6 2.2230 5.4640 -4.2403 17 1 2.1521 4.7097 -5.0239 18 7 0.8986 6.0023 -3.9204 19 6 -0.1960 5.1794 -3.9314 20 1 -0.0829 4.1336 -4.1763 21 6 -1.4508 5.6894 -3.6277 22 7 -1.5886 6.9638 -3.3288 23 14 -2.9439 4.5671 -3.6434 24 1 -2.7523 3.4744 -2.6562 25 1 -4.1548 5.3492 -3.2865 26 1 -3.1116 3.9853 -4.9994 27 6 2.8939 4.8800 -2.9792 28 7 3.8773 3.4407 -0.8624 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8573 0.6436 0.8892 36 1 5.4215 2.4136 1.7445 37 1 6.0287 4.9024 1.0740 38 1 2.9299 7.8137 -2.8586 39 1 4.6344 7.6161 -3.3657 40 1 3.1355 8.5342 -5.6116 41 1 2.1168 7.2980 -6.3878 42 1 1.6016 8.0415 -4.8548 43 1 0.7969 6.9417 -3.7007 44 1 -2.4653 7.3201 -3.1163 45 1 3.4792 3.9997 -3.2448 46 1 2.1341 4.6146 -2.2441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:35 Heat of formation + Delta-G solvation = 26.274900 kcal Electronic energy + Delta-G solvation = -28113.195417 eV Core-core repulsion = 24233.825851 eV Total energy + Delta-G solvation = -3879.369566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64503 -39.49119 -38.17288 -37.40272 -34.07446 -33.86126 -32.34815 -30.71281 -30.42602 -29.57621 -27.63995 -26.82439 -26.04359 -24.16013 -23.71339 -22.42214 -21.63895 -21.00169 -19.19961 -19.03729 -17.62831 -17.37152 -16.72207 -16.41278 -16.17854 -15.86846 -15.47595 -15.19240 -14.57508 -14.55980 -14.24739 -13.90081 -13.66115 -13.38606 -13.19677 -12.98674 -12.87422 -12.54433 -12.20402 -12.02448 -11.89657 -11.83181 -11.55741 -11.46899 -11.09540 -10.92676 -10.84227 -10.64305 -10.36397 -10.27333 -9.94707 -9.92341 -9.77568 -9.60893 -9.23984 -9.06866 -8.97970 -8.12221 -7.02920 -5.82082 -3.11124 1.71270 2.14803 2.23727 3.37046 3.37361 3.42413 3.44154 3.60492 3.71728 4.27225 4.53045 4.60636 4.69002 4.74759 4.88857 5.00752 5.16486 5.22137 5.27094 5.30526 5.38672 5.41796 5.51912 5.56462 5.58637 5.66365 5.72249 5.77501 5.88981 5.99956 6.06685 6.27960 6.33202 6.36184 6.41128 6.48969 6.64963 6.68666 6.75616 6.82022 6.91723 7.00160 7.64597 7.87867 7.99277 8.36292 8.53365 9.47638 10.03866 10.38942 11.40318 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.005590 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.339892 B = 5007.329722 C = 7966.544915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.047 3.953 4 C 0.128 3.872 5 N -0.286 5.286 6 C -0.020 4.020 7 C -0.180 4.180 8 C -0.005 4.005 9 C 0.611 3.389 10 O -0.550 6.550 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.114 4.114 14 H 0.078 0.922 15 C -0.132 4.132 16 C 0.169 3.831 17 H 0.069 0.931 18 N -0.712 5.712 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.085 3.915 28 N -0.246 5.246 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.057 0.943 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -11.203 5.885 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.031 4.031 4 C 0.007 3.993 5 N -0.075 5.075 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.166 4.166 9 C 0.398 3.602 10 O -0.428 6.428 11 N -0.325 5.325 12 C -0.007 4.007 13 C -0.134 4.134 14 H 0.096 0.904 15 C -0.190 4.190 16 C 0.057 3.943 17 H 0.086 0.914 18 N -0.354 5.354 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.041 4.041 28 N -0.081 5.081 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.675 -11.571 5.368 16.633 hybrid contribution -0.644 0.049 0.888 1.098 sum 10.031 -11.522 6.257 16.508 Atomic orbital electron populations 1.22809 0.79591 1.02962 1.01013 1.87717 1.20866 1.26729 1.95722 1.22674 0.91843 0.85630 1.02913 1.21639 0.93312 0.78508 1.05853 1.45414 1.31206 1.11619 1.19306 1.22831 0.98134 0.96732 0.98504 1.21746 1.04646 0.95925 0.98513 1.21940 1.01180 0.94057 0.99402 1.16511 0.79474 0.84991 0.79200 1.90748 1.43764 1.39808 1.68443 1.48252 1.41855 1.16219 1.26141 1.22274 1.01070 0.87491 0.89817 1.22658 0.98485 0.97637 0.94613 0.90350 1.21565 1.00283 0.96797 1.00378 1.21316 0.86109 0.93819 0.93053 0.91355 1.42458 1.00601 1.10064 1.82229 1.19167 0.86087 0.92208 1.39759 0.91179 1.24720 0.97531 0.96022 1.02327 1.69640 1.23063 1.11898 1.53211 0.86305 0.82768 0.79566 0.77710 1.21482 1.21726 1.21200 1.23236 0.92481 0.89528 0.98809 1.73786 1.21625 0.97589 1.15092 0.89258 0.93785 0.93061 0.92492 0.90637 0.87985 0.87213 0.80220 0.82104 0.91080 0.91130 0.93607 0.92326 0.90857 0.77744 0.93387 0.92431 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -4.41 10.70 -35.23 -0.38 -4.79 16 3 C 0.05 0.53 6.04 37.16 0.22 0.75 16 4 C 0.13 1.17 6.77 -4.04 -0.03 1.15 16 5 N -0.29 -3.48 3.41 -61.33 -0.21 -3.69 16 6 C -0.02 -0.21 11.40 -17.17 -0.20 -0.41 16 7 C -0.18 -2.45 10.81 -39.37 -0.43 -2.88 16 8 C -0.01 -0.09 6.98 -82.77 -0.58 -0.66 16 9 C 0.61 11.78 7.86 -12.39 -0.10 11.68 16 10 O -0.55 -11.65 17.18 5.31 0.09 -11.56 16 11 N -0.59 -11.08 3.33 -171.69 -0.57 -11.66 16 12 C 0.12 2.02 6.35 -2.53 -0.02 2.01 16 13 C -0.11 -1.86 3.52 -88.31 -0.31 -2.17 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.13 -2.12 8.99 37.16 0.33 -1.79 16 16 C 0.17 3.24 3.38 -65.94 -0.22 3.01 16 17 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 18 N -0.71 -16.82 4.59 -51.50 -0.24 -17.06 16 19 C -0.24 -6.34 9.98 -15.06 -0.15 -6.49 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 23 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.09 1.59 5.28 -3.06 -0.02 1.57 16 28 N -0.25 -3.86 9.19 33.42 0.31 -3.55 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.67 8.04 -51.93 -0.42 0.26 16 36 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 39 H 0.07 1.16 8.03 -51.93 -0.42 0.75 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.38 6.18 -51.93 -0.32 1.06 16 43 H 0.39 9.80 6.03 -40.82 -0.25 9.55 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 46 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -32.69 381.44 -7.24 -39.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.23 Total: 9.69 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.46 Total: 6.85 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.02 Total: -62.48 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.29 Total: -16.35 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.69 -7.24 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.211 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds