Wall clock time and date at job start Tue Mar 31 2020 14:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88258 * 124.72371 * 5 4 3 7 7 C 1.35362 * 107.23128 * 179.89710 * 6 5 4 8 8 C 1.41507 * 105.50000 * 0.34818 * 7 6 5 9 9 C 1.47711 * 126.51716 * 179.77859 * 8 7 6 10 10 O 1.21577 * 120.00053 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99879 * 179.97438 * 9 8 7 12 12 C 1.47419 * 125.64415 * 180.02562 * 11 9 8 13 13 C 1.54912 * 104.82821 * 204.08904 * 12 11 9 14 14 H 1.09002 * 111.00301 * 81.06642 * 13 12 11 15 15 C 1.53000 * 111.00532 * 204.91532 * 13 12 11 16 16 C 1.55156 * 101.58313 * 322.99323 * 13 12 11 17 17 H 1.08997 * 110.71923 * 153.86732 * 16 13 12 18 18 N 1.46507 * 110.71817 * 276.96297 * 16 13 12 19 19 C 1.36931 * 119.99867 * 205.00060 * 18 16 13 20 20 H 1.08001 * 120.00311 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31615 * 119.99851 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46992 * 60.00658 * 23 21 19 25 25 H 1.48505 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47365 * 300.00122 * 23 21 19 27 27 C 1.47023 * 125.64753 * 359.68997 * 11 9 8 28 28 N 1.28464 * 124.88927 * 305.02962 * 5 4 3 29 29 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 31 31 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 32 32 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 33 33 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 36 36 H 1.08002 * 126.38813 * 0.02562 * 6 5 4 37 37 H 1.08007 * 127.25338 * 180.09569 * 7 6 5 38 38 H 1.08996 * 110.36990 * 322.92502 * 12 11 9 39 39 H 1.09004 * 110.37229 * 85.25535 * 12 11 9 40 40 H 1.08995 * 109.47062 * 58.54940 * 15 13 12 41 41 H 1.09004 * 109.47141 * 178.54746 * 15 13 12 42 42 H 1.08997 * 109.47362 * 298.54965 * 15 13 12 43 43 H 0.96999 * 120.00054 * 24.99423 * 18 16 13 44 44 H 0.97008 * 120.00137 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.87866 * 298.39813 * 27 11 9 46 46 H 1.09002 * 109.88094 * 59.56180 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0215 2.9724 0.9105 7 6 5.3344 4.2449 0.5712 8 6 4.5722 4.5256 -0.5876 9 6 4.5575 5.7942 -1.3440 10 8 5.2489 6.7262 -0.9814 11 7 3.7775 5.9186 -2.4361 12 6 3.6672 7.1220 -3.2804 13 6 2.2796 7.0043 -3.9590 14 1 1.4873 7.3375 -3.2886 15 6 2.2449 7.7836 -5.2752 16 6 2.1862 5.4768 -4.2145 17 1 1.1455 5.1553 -4.2542 18 7 2.8863 5.1141 -5.4493 19 6 2.5273 3.9832 -6.1329 20 1 1.7284 3.3585 -5.7617 21 6 3.1903 3.6398 -7.3032 22 7 4.1643 4.4008 -7.7553 23 14 2.7010 2.0967 -8.2354 24 1 1.2775 2.1969 -8.6459 25 1 3.5557 1.9553 -9.4416 26 1 2.8815 0.9112 -7.3597 27 6 2.9011 4.8744 -2.9866 28 7 3.8780 3.4397 -0.8635 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 5.4127 2.4190 1.7515 37 1 6.0184 4.9079 1.0802 38 1 3.7143 8.0216 -2.6669 39 1 4.4570 7.1323 -4.0316 40 1 3.0173 7.4029 -5.9433 41 1 1.2679 7.6630 -5.7433 42 1 2.4247 8.8402 -5.0768 43 1 3.6041 5.6750 -5.7825 44 1 4.6279 4.1607 -8.5729 45 1 3.4958 4.0119 -3.2872 46 1 2.1644 4.5772 -2.2401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054884574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:37 Heat of formation + Delta-G solvation = 26.605242 kcal Electronic energy + Delta-G solvation = -27947.212371 eV Core-core repulsion = 24067.857130 eV Total energy + Delta-G solvation = -3879.355242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.65384 -39.49768 -38.28400 -37.40792 -34.09921 -33.86018 -32.33377 -30.71695 -30.41140 -29.62325 -27.64625 -26.89985 -26.08956 -24.18753 -23.69676 -22.45117 -21.65042 -21.01887 -19.19103 -19.04202 -17.61360 -17.43041 -16.78030 -16.45166 -16.24358 -15.86563 -15.64748 -14.93070 -14.90934 -14.50023 -14.16682 -13.95705 -13.62535 -13.40634 -13.23850 -12.99666 -12.87774 -12.52828 -12.29510 -12.03383 -11.91965 -11.86545 -11.65833 -11.45430 -11.07647 -10.90154 -10.83162 -10.62933 -10.34369 -10.24841 -10.06388 -9.94204 -9.77275 -9.59435 -9.24686 -9.07461 -8.95857 -8.12812 -7.01411 -5.79759 -3.09006 1.70755 2.14643 2.20619 3.34532 3.41619 3.46351 3.47407 3.55932 3.70608 4.24325 4.52670 4.56056 4.66419 4.73389 4.84839 4.97804 5.01183 5.08782 5.24452 5.28905 5.31075 5.37493 5.42473 5.46602 5.61276 5.65948 5.72862 5.77120 5.89473 6.00478 6.07914 6.27452 6.34893 6.36075 6.41713 6.49427 6.62966 6.67181 6.72231 6.78907 6.92029 7.02153 7.66852 7.87252 7.98727 8.38162 8.52877 9.49848 10.05319 10.40398 11.42464 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.004689 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.031255 B = 5969.523742 C = 8060.361899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.286 5.286 6 C -0.020 4.020 7 C -0.180 4.180 8 C -0.005 4.005 9 C 0.611 3.389 10 O -0.550 6.550 11 N -0.594 5.594 12 C 0.115 3.885 13 C -0.116 4.116 14 H 0.077 0.923 15 C -0.131 4.131 16 C 0.169 3.831 17 H 0.071 0.929 18 N -0.711 5.711 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.085 3.915 28 N -0.246 5.246 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.080 0.920 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -4.148 18.385 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.075 5.075 6 C -0.162 4.162 7 C -0.208 4.208 8 C -0.166 4.166 9 C 0.398 3.602 10 O -0.427 6.427 11 N -0.325 5.325 12 C -0.007 4.007 13 C -0.136 4.136 14 H 0.095 0.905 15 C -0.189 4.189 16 C 0.057 3.943 17 H 0.089 0.911 18 N -0.352 5.352 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.041 4.041 28 N -0.081 5.081 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.222 0.778 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.255 -4.568 17.763 19.079 hybrid contribution 0.452 -0.427 0.000 0.622 sum -4.802 -4.995 17.763 19.067 Atomic orbital electron populations 1.22791 0.79830 1.03106 1.00533 1.87768 1.20683 1.26730 1.95635 1.22647 0.92151 0.85585 1.02383 1.21655 0.93090 0.78652 1.06140 1.45398 1.31504 1.11604 1.19017 1.22831 0.98422 0.96582 0.98366 1.21752 1.04617 0.96045 0.98407 1.21943 1.01467 0.94032 0.99134 1.16515 0.79441 0.84993 0.79238 1.90752 1.43146 1.39714 1.69134 1.48264 1.42509 1.16143 1.25599 1.22288 0.97835 0.87391 0.93160 1.22650 0.95817 0.97689 0.97425 0.90465 1.21557 1.03329 0.97798 0.96233 1.21262 0.95615 0.90970 0.86443 0.91119 1.42435 1.41136 1.28446 1.23157 1.19174 1.14405 1.00420 1.03368 0.91160 1.24723 0.98507 0.98890 0.98409 1.69644 1.25251 1.39068 1.23817 0.86298 0.77590 0.83096 0.79346 1.21242 1.21732 1.21338 1.23257 0.93152 0.91272 0.96385 1.73779 1.22276 0.97488 1.14550 0.89196 0.93929 0.93333 0.92660 0.90902 0.87143 0.87731 0.80215 0.82095 0.91124 0.91074 0.90793 0.92385 0.93738 0.77788 0.93391 0.90126 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.91 10.70 -35.23 -0.38 -4.29 16 3 C 0.05 0.48 6.04 37.16 0.22 0.71 16 4 C 0.13 1.14 6.77 -4.04 -0.03 1.11 16 5 N -0.29 -3.45 3.41 -61.33 -0.21 -3.66 16 6 C -0.02 -0.21 11.40 -17.17 -0.20 -0.41 16 7 C -0.18 -2.44 10.81 -39.36 -0.43 -2.87 16 8 C -0.01 -0.09 6.98 -82.77 -0.58 -0.66 16 9 C 0.61 11.74 7.86 -12.39 -0.10 11.64 16 10 O -0.55 -11.62 17.18 5.30 0.09 -11.53 16 11 N -0.59 -11.06 3.33 -171.68 -0.57 -11.63 16 12 C 0.12 2.02 6.34 -2.53 -0.02 2.00 16 13 C -0.12 -1.89 3.52 -88.47 -0.31 -2.20 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 15 C -0.13 -2.13 8.98 37.16 0.33 -1.80 16 16 C 0.17 3.24 3.39 -66.09 -0.22 3.02 16 17 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 18 N -0.71 -16.90 4.46 -51.65 -0.23 -17.13 16 19 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.09 1.58 5.28 -3.06 -0.02 1.57 16 28 N -0.25 -3.84 9.19 33.42 0.31 -3.53 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.11 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 38 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 39 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 40 H 0.07 1.41 6.26 -51.93 -0.33 1.08 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.39 9.88 6.24 -40.82 -0.25 9.63 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 46 H 0.06 0.96 7.64 -51.93 -0.40 0.56 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -33.20 381.55 -7.25 -40.44 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.24 Total: 8.83 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.47 Total: 6.56 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.02 Total: -62.70 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.29 Total: -15.82 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.20 -7.25 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.048 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds