Wall clock time and date at job start Tue Mar 31 2020 14:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.35032 * 124.88258 * 124.72371 * 5 4 3 7 7 C 1.35362 * 107.23128 * 179.89710 * 6 5 4 8 8 C 1.41507 * 105.50000 * 0.34818 * 7 6 5 9 9 C 1.47711 * 126.51716 * 179.77859 * 8 7 6 10 10 O 1.21577 * 120.00053 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99879 * 179.97438 * 9 8 7 12 12 C 1.47419 * 125.64415 * 180.02562 * 11 9 8 13 13 C 1.54912 * 104.82821 * 204.08904 * 12 11 9 14 14 H 1.09002 * 111.00301 * 81.06642 * 13 12 11 15 15 C 1.53000 * 111.00532 * 204.91532 * 13 12 11 16 16 C 1.55156 * 101.58313 * 322.99323 * 13 12 11 17 17 H 1.08997 * 110.71923 * 153.86732 * 16 13 12 18 18 N 1.46507 * 110.71817 * 276.96297 * 16 13 12 19 19 C 1.36931 * 119.99867 * 205.00060 * 18 16 13 20 20 H 1.08001 * 120.00311 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00008 * 179.97438 * 19 18 16 22 22 N 1.31615 * 119.99851 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46992 * 60.00658 * 23 21 19 25 25 H 1.48505 * 109.47021 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47365 * 300.00122 * 23 21 19 27 27 C 1.47023 * 125.64753 * 359.68997 * 11 9 8 28 28 N 1.28464 * 124.88927 * 305.02962 * 5 4 3 29 29 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 31 31 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 32 32 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 33 33 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 36 36 H 1.08002 * 126.38813 * 0.02562 * 6 5 4 37 37 H 1.08007 * 127.25338 * 180.09569 * 7 6 5 38 38 H 1.08996 * 110.36990 * 322.92502 * 12 11 9 39 39 H 1.09004 * 110.37229 * 85.25535 * 12 11 9 40 40 H 1.08995 * 109.47062 * 58.54940 * 15 13 12 41 41 H 1.09004 * 109.47141 * 178.54746 * 15 13 12 42 42 H 1.08997 * 109.47362 * 298.54965 * 15 13 12 43 43 H 0.96999 * 120.00054 * 24.99423 * 18 16 13 44 44 H 0.97008 * 120.00137 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.87866 * 298.39813 * 27 11 9 46 46 H 1.09002 * 109.88094 * 59.56180 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0215 2.9724 0.9105 7 6 5.3344 4.2449 0.5712 8 6 4.5722 4.5256 -0.5876 9 6 4.5575 5.7942 -1.3440 10 8 5.2489 6.7262 -0.9814 11 7 3.7775 5.9186 -2.4361 12 6 3.6672 7.1220 -3.2804 13 6 2.2796 7.0043 -3.9590 14 1 1.4873 7.3375 -3.2886 15 6 2.2449 7.7836 -5.2752 16 6 2.1862 5.4768 -4.2145 17 1 1.1455 5.1553 -4.2542 18 7 2.8863 5.1141 -5.4493 19 6 2.5273 3.9832 -6.1329 20 1 1.7284 3.3585 -5.7617 21 6 3.1903 3.6398 -7.3032 22 7 4.1643 4.4008 -7.7553 23 14 2.7010 2.0967 -8.2354 24 1 1.2775 2.1969 -8.6459 25 1 3.5557 1.9553 -9.4416 26 1 2.8815 0.9112 -7.3597 27 6 2.9011 4.8744 -2.9866 28 7 3.8780 3.4397 -0.8635 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 5.4127 2.4190 1.7515 37 1 6.0184 4.9079 1.0802 38 1 3.7143 8.0216 -2.6669 39 1 4.4570 7.1323 -4.0316 40 1 3.0173 7.4029 -5.9433 41 1 1.2679 7.6630 -5.7433 42 1 2.4247 8.8402 -5.0768 43 1 3.6041 5.6750 -5.7825 44 1 4.6279 4.1607 -8.5729 45 1 3.4958 4.0119 -3.2872 46 1 2.1644 4.5772 -2.2401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054884574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:37 Heat of formation + Delta-G solvation = 3.824103 kcal Electronic energy + Delta-G solvation = -27948.200236 eV Core-core repulsion = 24067.857130 eV Total energy + Delta-G solvation = -3880.343106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.67236 -40.97608 -39.06714 -38.88214 -35.72387 -34.99606 -33.89729 -32.27598 -31.67920 -30.54509 -29.34077 -27.93203 -27.06730 -25.80733 -25.09505 -23.68711 -22.78257 -22.10040 -20.70201 -20.30146 -19.41842 -18.48143 -17.93642 -17.53923 -17.17553 -16.99893 -16.87828 -16.38311 -16.18055 -15.90075 -15.57410 -15.28802 -14.80819 -14.71615 -14.47188 -14.23563 -14.19761 -13.95813 -13.51827 -13.33939 -13.05945 -13.01257 -12.87066 -12.76266 -12.62560 -12.34543 -12.32136 -12.18739 -12.03340 -11.74834 -11.45731 -11.43576 -11.24988 -10.92281 -10.77759 -10.29405 -10.10142 -9.63679 -9.00527 -7.91539 -5.19638 0.50941 1.18069 1.32991 1.47960 1.50142 1.55932 2.01163 2.34365 2.57440 2.78286 3.32623 3.39797 3.55006 3.78719 3.81832 3.90422 3.93730 3.98152 4.07666 4.12748 4.20509 4.42902 4.44638 4.49521 4.61148 4.61490 4.64410 4.67582 4.72363 4.74501 4.77165 4.83644 4.90158 4.99167 5.02911 5.19994 5.25262 5.31671 5.42417 5.54311 5.61839 5.84393 6.01725 6.29309 6.46290 6.80809 7.11509 7.36733 8.10448 8.34493 9.31606 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.004689 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.031255 B = 5969.523742 C = 8060.361899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.055 3.945 4 C 0.121 3.879 5 N -0.280 5.280 6 C 0.010 3.990 7 C -0.200 4.200 8 C -0.041 4.041 9 C 0.604 3.396 10 O -0.578 6.578 11 N -0.598 5.598 12 C 0.114 3.886 13 C -0.099 4.099 14 H 0.109 0.891 15 C -0.124 4.124 16 C 0.161 3.839 17 H 0.082 0.918 18 N -0.720 5.720 19 C -0.235 4.235 20 H 0.079 0.921 21 C -0.072 4.072 22 N -0.969 5.969 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.300 1.300 26 H -0.282 1.282 27 C 0.106 3.894 28 N -0.271 5.271 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.168 0.832 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.375 0.625 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -5.543 20.808 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.002 3.998 5 N -0.070 5.070 6 C -0.132 4.132 7 C -0.228 4.228 8 C -0.200 4.200 9 C 0.393 3.607 10 O -0.458 6.458 11 N -0.329 5.329 12 C -0.008 4.008 13 C -0.119 4.119 14 H 0.127 0.873 15 C -0.182 4.182 16 C 0.051 3.949 17 H 0.100 0.900 18 N -0.360 5.360 19 C -0.367 4.367 20 H 0.097 0.903 21 C -0.264 4.264 22 N -0.620 5.620 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.227 1.227 26 H -0.209 1.209 27 C -0.020 4.020 28 N -0.108 5.108 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.171 0.829 35 H 0.116 0.884 36 H 0.251 0.749 37 H 0.186 0.814 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.208 0.792 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.590 -5.969 20.216 22.085 hybrid contribution 0.814 -0.047 -0.627 1.029 sum -5.775 -6.016 19.590 21.291 Atomic orbital electron populations 1.22970 0.78740 1.04292 1.00893 1.87745 1.21949 1.26736 1.95672 1.22544 0.92602 0.85481 1.01651 1.21953 0.92662 0.77263 1.07927 1.45730 1.31183 1.11778 1.18305 1.23545 0.96048 0.95429 0.98167 1.22005 1.05139 0.97775 0.97880 1.21824 1.03831 0.93685 1.00688 1.16978 0.78748 0.85783 0.79220 1.90710 1.44159 1.40990 1.69965 1.48364 1.42583 1.16315 1.25680 1.22317 0.97925 0.87741 0.92841 1.22611 0.95930 0.95424 0.97930 0.87299 1.21476 1.02163 0.99257 0.95340 1.21509 0.95486 0.93231 0.84721 0.90012 1.42568 1.41205 1.27699 1.24501 1.19578 1.13487 1.00705 1.02902 0.90299 1.25470 0.99179 1.01907 0.99879 1.69812 1.26980 1.40973 1.24189 0.85306 0.77434 0.79908 0.77676 1.20081 1.22691 1.20853 1.22897 0.92714 0.90026 0.96347 1.73694 1.23050 0.97977 1.16065 0.87677 0.92587 0.93973 0.91654 0.93416 0.82902 0.88408 0.74937 0.81401 0.89833 0.93297 0.94201 0.92140 0.91005 0.79152 0.94244 0.93424 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.29 10.70 -148.98 -1.59 -8.88 16 3 C 0.05 0.97 6.04 71.98 0.43 1.40 16 4 C 0.12 1.88 6.77 86.38 0.58 2.46 16 5 N -0.28 -6.14 3.41 -347.95 -1.19 -7.32 16 6 C 0.01 0.18 11.40 83.54 0.95 1.13 16 7 C -0.20 -5.14 10.81 22.41 0.24 -4.90 16 8 C -0.04 -1.39 6.98 42.46 0.30 -1.10 16 9 C 0.60 23.68 7.86 86.75 0.68 24.37 16 10 O -0.58 -25.01 17.18 -3.96 -0.07 -25.08 16 11 N -0.60 -22.62 3.33 -815.33 -2.71 -25.34 16 12 C 0.11 4.01 6.34 86.86 0.55 4.56 16 13 C -0.10 -3.13 3.52 -9.40 -0.03 -3.17 16 14 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 15 C -0.12 -3.95 8.98 71.98 0.65 -3.31 16 16 C 0.16 6.12 3.39 46.18 0.16 6.28 16 17 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 18 N -0.72 -34.93 4.46 -317.31 -1.41 -36.34 16 19 C -0.23 -12.58 9.96 84.03 0.84 -11.74 16 20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 23 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 C 0.11 3.96 5.28 86.73 0.46 4.42 16 28 N -0.27 -8.34 9.19 -48.17 -0.44 -8.78 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 34 H 0.15 1.09 8.04 -2.39 -0.02 1.07 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.08 2.72 8.04 -2.39 -0.02 2.70 16 39 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 40 H 0.04 1.55 6.26 -2.39 -0.01 1.53 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.37 19.94 6.24 -92.71 -0.58 19.36 16 44 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 45 H 0.05 2.11 7.69 -2.39 -0.02 2.09 16 46 H 0.07 2.48 7.64 -2.39 -0.02 2.46 16 Total: -1.00 -74.94 381.55 2.81 -72.13 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.40 Total: 32.22 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 7.52 Total: 18.41 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -5.47 Total: -136.53 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.66 Total: -33.96 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.94 2.81 -72.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054884574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.952 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds