Wall clock time and date at job start Tue Mar 31 2020 14:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46894 * 2 1 4 4 O 1.21299 * 120.00211 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.40159 * 119.99845 * 179.97438 * 5 3 2 7 7 C 1.40406 * 125.97704 * 354.30338 * 6 5 3 8 8 C 1.35241 * 107.86990 * 180.02562 * 7 6 5 9 9 N 1.34967 * 107.85719 * 0.02562 * 8 7 6 10 10 C 1.46506 * 125.97063 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46798 * 123.42084 * 10 9 8 12 12 H 1.09002 * 109.87112 * 54.71612 * 11 10 9 13 13 C 1.54319 * 109.88537 * 293.69371 * 11 10 9 14 14 C 1.55149 * 102.94406 * 262.77600 * 13 11 10 15 15 H 1.09001 * 111.00539 * 82.57128 * 14 13 11 16 16 O 1.42898 * 111.00768 * 206.38577 * 14 13 11 17 17 C 1.42900 * 114.00532 * 210.00136 * 16 14 13 18 18 C 1.54917 * 101.58189 * 324.49846 * 14 13 11 19 19 N 1.47023 * 109.87834 * 175.88463 * 11 10 9 20 20 C 1.36935 * 125.65079 * 300.42900 * 19 11 10 21 21 H 1.08000 * 120.00136 * 11.38600 * 20 19 11 22 22 C 1.38813 * 119.99918 * 191.37972 * 20 19 11 23 23 N 1.31614 * 120.00351 * 10.96675 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 190.96506 * 22 20 19 25 25 H 1.48498 * 109.47189 * 5.01263 * 24 22 20 26 26 H 1.48504 * 109.47231 * 125.01633 * 24 22 20 27 27 H 1.48497 * 109.47379 * 245.01689 * 24 22 20 28 28 N 1.31225 * 125.97190 * 174.32820 * 6 5 3 29 29 H 1.08997 * 109.47122 * 60.00083 * 1 2 3 30 30 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47060 * 300.00094 * 1 2 3 32 32 H 1.08995 * 109.47009 * 239.99807 * 2 1 3 33 33 H 1.08997 * 109.47122 * 119.99916 * 2 1 3 34 34 H 0.96996 * 120.00443 * 0.02562 * 5 3 2 35 35 H 1.08003 * 126.06591 * 359.75420 * 7 6 5 36 36 H 1.08000 * 126.06897 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47134 * 243.41983 * 10 9 8 38 38 H 1.09002 * 109.47049 * 3.42773 * 10 9 8 39 39 H 1.08996 * 110.71841 * 21.14360 * 13 11 10 40 40 H 1.09006 * 110.71636 * 144.23767 * 13 11 10 41 41 H 1.09006 * 109.46989 * 300.00158 * 17 16 14 42 42 H 1.09000 * 109.47004 * 59.99691 * 17 16 14 43 43 H 1.08998 * 109.47741 * 179.97438 * 17 16 14 44 44 H 1.09003 * 110.36398 * 155.84781 * 18 14 13 45 45 H 1.08997 * 110.36299 * 278.06042 * 18 14 13 46 46 H 0.96998 * 120.00178 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8245 2.9886 0.0000 7 6 3.0335 4.1430 -0.1139 8 6 3.8563 5.2155 -0.0730 9 7 5.1206 4.7624 0.0610 10 6 6.3267 5.5897 0.1457 11 6 7.0792 5.2634 1.4373 12 1 7.2813 4.1935 1.4882 13 6 6.2403 5.6979 2.6575 14 6 6.8362 7.0856 3.0127 15 1 6.4057 7.8674 2.3869 16 8 6.6519 7.3829 4.3982 17 6 6.5250 8.7777 4.6816 18 6 8.3352 6.8738 2.6840 19 7 8.3410 6.0166 1.4846 20 6 9.3543 5.9345 0.5673 21 1 9.1947 5.4208 -0.3692 22 6 10.5867 6.5117 0.8410 23 7 10.8552 6.9460 2.0540 24 14 11.8642 6.6720 -0.5125 25 1 11.2786 6.2239 -1.8015 26 1 12.2878 8.0907 -0.6278 27 1 13.0417 5.8290 -0.1842 28 7 5.0777 3.3631 0.1053 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9878 0.9299 0.0005 35 1 1.9590 4.1696 -0.2201 36 1 3.5552 6.2507 -0.1370 37 1 6.9690 5.3844 -0.7107 38 1 6.0458 6.6429 0.1450 39 1 5.1875 5.7873 2.3896 40 1 6.3686 4.9974 3.4828 41 1 7.4268 9.2977 4.3583 42 1 5.6631 9.1798 4.1490 43 1 6.3878 8.9198 5.7536 44 1 8.8153 7.8287 2.4702 45 1 8.8381 6.3741 3.5120 46 1 11.7166 7.3490 2.2453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070600272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:46 Heat of formation + Delta-G solvation = 31.349967 kcal Electronic energy + Delta-G solvation = -27487.760425 eV Core-core repulsion = 23608.610930 eV Total energy + Delta-G solvation = -3879.149495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20876 -39.69097 -38.44686 -36.28399 -34.96266 -33.24459 -32.75263 -31.53975 -29.88584 -29.27637 -28.00112 -26.14226 -25.52002 -24.62706 -23.75495 -21.69029 -20.91251 -20.39530 -19.90471 -19.26178 -17.34270 -17.15880 -16.86027 -16.29306 -16.00942 -15.72237 -15.29240 -14.85821 -14.42125 -14.36182 -14.27410 -13.90766 -13.60078 -13.24015 -13.17142 -12.82029 -12.62660 -12.34564 -12.18933 -12.05359 -12.01785 -11.74213 -11.49793 -11.39049 -11.01314 -10.99741 -10.96225 -10.72888 -10.48659 -10.39970 -10.05922 -9.90608 -9.87914 -9.77391 -8.91702 -8.69671 -8.64416 -8.02481 -6.97489 -5.86503 -3.22568 1.93910 2.33579 2.45124 3.27083 3.29876 3.32835 3.39795 3.41448 4.16831 4.38673 4.42487 4.73040 4.78062 4.89416 5.08921 5.21808 5.27629 5.32459 5.45191 5.48734 5.53012 5.56743 5.62649 5.64276 5.76590 5.77783 5.82651 5.85220 5.91736 5.92949 5.99702 6.05466 6.19196 6.25427 6.46662 6.52893 6.82624 6.96689 7.17569 7.23785 7.32828 7.43785 7.65374 7.82345 7.96619 8.07201 8.11390 9.04383 9.66353 10.31262 11.25737 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003084 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.202845 B = 9075.906003 C =10463.844133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.518 3.482 4 O -0.517 6.517 5 N -0.636 5.636 6 C 0.277 3.723 7 C -0.275 4.275 8 C 0.058 3.942 9 N -0.343 5.343 10 C 0.121 3.879 11 C 0.155 3.845 12 H 0.054 0.946 13 C -0.118 4.118 14 C 0.056 3.944 15 H 0.061 0.939 16 O -0.382 6.382 17 C 0.035 3.965 18 C 0.161 3.839 19 N -0.587 5.587 20 C -0.240 4.240 21 H 0.080 0.920 22 C 0.000 4.000 23 N -0.911 5.911 24 Si 0.911 3.089 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 N -0.310 5.310 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.414 0.586 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.011 -6.953 -2.226 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.304 3.696 4 O -0.391 6.391 5 N -0.284 5.284 6 C 0.023 3.977 7 C -0.306 4.306 8 C -0.090 4.090 9 N -0.126 5.126 10 C -0.002 4.002 11 C 0.047 3.953 12 H 0.072 0.928 13 C -0.156 4.156 14 C -0.003 4.003 15 H 0.079 0.921 16 O -0.300 6.300 17 C -0.062 4.062 18 C 0.036 3.964 19 N -0.312 5.312 20 C -0.368 4.368 21 H 0.098 0.902 22 C -0.198 4.198 23 N -0.556 5.556 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 N -0.140 5.140 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.249 0.751 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.053 -6.673 -1.948 17.494 hybrid contribution 0.441 0.304 -0.901 1.048 sum -15.612 -6.369 -2.849 17.101 Atomic orbital electron populations 1.21547 0.92622 1.01787 1.03581 1.21617 0.98864 0.92643 1.04832 1.20915 0.80825 0.92353 0.75476 1.90652 1.54961 1.46044 1.47401 1.42686 1.07912 1.04938 1.72903 1.19155 0.91708 0.85637 1.01226 1.21628 1.01672 0.89063 1.18202 1.22601 0.84427 1.00239 1.01710 1.48503 1.06452 1.02983 1.54665 1.22702 0.82540 0.92064 1.02849 1.21074 0.87119 0.96985 0.90161 0.92822 1.22609 0.98107 0.96661 0.98208 1.23714 0.99490 0.95835 0.81246 0.92138 1.87842 1.93551 1.23280 1.25332 1.22693 0.99612 0.83009 1.00897 1.21755 0.89280 0.96076 0.89299 1.44366 1.13998 1.46140 1.26729 1.19030 0.89620 1.32616 0.95501 0.90228 1.24868 0.97033 1.01379 0.96522 1.69988 1.22760 1.44943 1.17908 0.86086 0.81455 0.77395 0.81015 1.20309 1.21577 1.21615 1.77357 1.16634 0.91129 1.28924 0.91823 0.91875 0.91787 0.88491 0.88438 0.75069 0.81816 0.81061 0.89347 0.88973 0.91997 0.90740 0.93848 0.94789 0.90340 0.91546 0.94031 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.14 -0.90 6.42 -27.88 -0.18 -1.08 16 3 C 0.52 5.72 7.80 -10.99 -0.09 5.64 16 4 O -0.52 -7.46 13.15 5.54 0.07 -7.39 16 5 N -0.64 -7.50 5.45 -11.13 -0.06 -7.56 16 6 C 0.28 4.33 8.10 -154.38 -1.25 3.08 16 7 C -0.27 -4.22 9.60 -39.83 -0.38 -4.60 16 8 C 0.06 0.84 11.29 -17.24 -0.19 0.64 16 9 N -0.34 -5.68 3.11 -61.38 -0.19 -5.87 16 10 C 0.12 2.12 5.92 -4.04 -0.02 2.10 16 11 C 0.16 3.16 3.30 -66.95 -0.22 2.94 16 12 H 0.05 1.21 8.09 -51.93 -0.42 0.79 16 13 C -0.12 -2.20 6.13 -24.90 -0.15 -2.36 16 14 C 0.06 1.07 3.54 -24.58 -0.09 0.99 16 15 H 0.06 1.07 7.83 -51.93 -0.41 0.67 16 16 O -0.38 -7.14 10.52 -35.23 -0.37 -7.51 16 17 C 0.03 0.50 10.85 101.05 1.10 1.60 16 18 C 0.16 3.83 5.13 -2.53 -0.01 3.81 16 19 N -0.59 -14.21 3.14 -162.57 -0.51 -14.72 16 20 C -0.24 -6.32 9.76 -15.06 -0.15 -6.47 16 21 H 0.08 2.04 7.40 -52.49 -0.39 1.65 16 22 C 0.00 -0.01 5.38 -17.43 -0.09 -0.10 16 23 N -0.91 -26.00 10.79 55.49 0.60 -25.40 16 24 Si 0.91 21.35 29.57 -169.99 -5.03 16.32 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 N -0.31 -5.42 12.41 31.44 0.39 -5.03 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.41 3.69 8.82 -40.82 -0.36 3.33 16 35 H 0.16 2.53 5.97 -52.48 -0.31 2.21 16 36 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.09 1.65 7.48 -51.93 -0.39 1.26 16 38 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 39 H 0.06 1.06 7.30 -51.93 -0.38 0.68 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.72 7.08 -51.93 -0.37 1.35 16 45 H 0.04 1.12 8.03 -51.93 -0.42 0.70 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -32.96 377.50 -8.02 -40.98 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.22 Total: 4.89 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.39 Total: 5.61 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.23 Total: -58.58 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.30 Total: -14.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.96 -8.02 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070600272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.326 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds