Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46894 * 2 1 4 4 O 1.21299 * 120.00211 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99853 * 179.97438 * 3 2 1 6 6 C 1.40159 * 119.99845 * 179.97438 * 5 3 2 7 7 C 1.40406 * 125.97704 * 354.30338 * 6 5 3 8 8 C 1.35241 * 107.86990 * 180.02562 * 7 6 5 9 9 N 1.34967 * 107.85719 * 0.02562 * 8 7 6 10 10 C 1.46506 * 125.97063 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46798 * 123.42084 * 10 9 8 12 12 H 1.09002 * 109.87112 * 54.71612 * 11 10 9 13 13 C 1.54319 * 109.88537 * 293.69371 * 11 10 9 14 14 C 1.55149 * 102.94406 * 262.77600 * 13 11 10 15 15 H 1.09001 * 111.00539 * 82.57128 * 14 13 11 16 16 O 1.42898 * 111.00768 * 206.38577 * 14 13 11 17 17 C 1.42900 * 114.00532 * 210.00136 * 16 14 13 18 18 C 1.54917 * 101.58189 * 324.49846 * 14 13 11 19 19 N 1.47023 * 109.87834 * 175.88463 * 11 10 9 20 20 C 1.36935 * 125.65079 * 300.42900 * 19 11 10 21 21 H 1.08000 * 120.00136 * 11.38600 * 20 19 11 22 22 C 1.38813 * 119.99918 * 191.37972 * 20 19 11 23 23 N 1.31614 * 120.00351 * 10.96675 * 22 20 19 24 24 Si 1.86802 * 119.99836 * 190.96506 * 22 20 19 25 25 H 1.48498 * 109.47189 * 5.01263 * 24 22 20 26 26 H 1.48504 * 109.47231 * 125.01633 * 24 22 20 27 27 H 1.48497 * 109.47379 * 245.01689 * 24 22 20 28 28 N 1.31225 * 125.97190 * 174.32820 * 6 5 3 29 29 H 1.08997 * 109.47122 * 60.00083 * 1 2 3 30 30 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47060 * 300.00094 * 1 2 3 32 32 H 1.08995 * 109.47009 * 239.99807 * 2 1 3 33 33 H 1.08997 * 109.47122 * 119.99916 * 2 1 3 34 34 H 0.96996 * 120.00443 * 0.02562 * 5 3 2 35 35 H 1.08003 * 126.06591 * 359.75420 * 7 6 5 36 36 H 1.08000 * 126.06897 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47134 * 243.41983 * 10 9 8 38 38 H 1.09002 * 109.47049 * 3.42773 * 10 9 8 39 39 H 1.08996 * 110.71841 * 21.14360 * 13 11 10 40 40 H 1.09006 * 110.71636 * 144.23767 * 13 11 10 41 41 H 1.09006 * 109.46989 * 300.00158 * 17 16 14 42 42 H 1.09000 * 109.47004 * 59.99691 * 17 16 14 43 43 H 1.08998 * 109.47741 * 179.97438 * 17 16 14 44 44 H 1.09003 * 110.36398 * 155.84781 * 18 14 13 45 45 H 1.08997 * 110.36299 * 278.06042 * 18 14 13 46 46 H 0.96998 * 120.00178 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8245 2.9886 0.0000 7 6 3.0335 4.1430 -0.1139 8 6 3.8563 5.2155 -0.0730 9 7 5.1206 4.7624 0.0610 10 6 6.3267 5.5897 0.1457 11 6 7.0792 5.2634 1.4373 12 1 7.2813 4.1935 1.4882 13 6 6.2403 5.6979 2.6575 14 6 6.8362 7.0856 3.0127 15 1 6.4057 7.8674 2.3869 16 8 6.6519 7.3829 4.3982 17 6 6.5250 8.7777 4.6816 18 6 8.3352 6.8738 2.6840 19 7 8.3410 6.0166 1.4846 20 6 9.3543 5.9345 0.5673 21 1 9.1947 5.4208 -0.3692 22 6 10.5867 6.5117 0.8410 23 7 10.8552 6.9460 2.0540 24 14 11.8642 6.6720 -0.5125 25 1 11.2786 6.2239 -1.8015 26 1 12.2878 8.0907 -0.6278 27 1 13.0417 5.8290 -0.1842 28 7 5.0777 3.3631 0.1053 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9878 0.9299 0.0005 35 1 1.9590 4.1696 -0.2201 36 1 3.5552 6.2507 -0.1370 37 1 6.9690 5.3844 -0.7107 38 1 6.0458 6.6429 0.1450 39 1 5.1875 5.7873 2.3896 40 1 6.3686 4.9974 3.4828 41 1 7.4268 9.2977 4.3583 42 1 5.6631 9.1798 4.1490 43 1 6.3878 8.9198 5.7536 44 1 8.8153 7.8287 2.4702 45 1 8.8381 6.3741 3.5120 46 1 11.7166 7.3490 2.2453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070600272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = 9.571987 kcal Electronic energy + Delta-G solvation = -27488.704789 eV Core-core repulsion = 23608.610930 eV Total energy + Delta-G solvation = -3880.093859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36442 -40.70337 -40.00630 -37.79652 -36.06290 -34.68498 -33.81492 -32.90111 -31.14216 -31.02596 -29.47487 -27.50406 -26.79189 -26.03713 -25.10889 -22.70638 -22.18423 -22.06292 -20.91345 -20.77850 -18.93820 -18.34171 -17.99699 -17.75671 -17.28646 -16.80416 -16.70408 -16.16990 -16.02766 -15.74401 -15.29649 -15.09574 -15.02872 -14.62759 -14.25394 -14.08289 -13.97281 -13.78708 -13.66499 -13.24018 -13.14206 -13.03673 -12.80503 -12.63078 -12.58725 -12.35405 -12.17911 -12.07564 -11.98390 -11.85990 -11.72003 -11.54035 -11.37351 -10.86248 -10.77227 -10.41083 -9.83271 -9.27466 -8.91565 -7.92051 -5.30371 0.84635 1.23538 1.43225 1.46186 1.47197 1.57463 2.19435 2.23912 2.47015 2.79889 3.27041 3.57943 3.64937 3.66965 3.82496 3.96603 4.05332 4.10006 4.22301 4.24065 4.31481 4.42291 4.45119 4.56798 4.62052 4.64472 4.70293 4.82293 4.85131 4.86751 4.90564 4.96421 5.04663 5.10871 5.14454 5.19321 5.34085 5.42385 5.44529 5.62852 5.85418 6.09368 6.16104 6.21800 6.34591 6.90331 7.00808 7.13681 7.66999 8.32295 9.19549 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003084 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.202845 B = 9075.906003 C =10463.844133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.513 3.487 4 O -0.554 6.554 5 N -0.632 5.632 6 C 0.276 3.724 7 C -0.291 4.291 8 C 0.072 3.928 9 N -0.355 5.355 10 C 0.139 3.861 11 C 0.157 3.843 12 H 0.026 0.974 13 C -0.105 4.105 14 C 0.074 3.926 15 H 0.087 0.913 16 O -0.401 6.401 17 C 0.027 3.973 18 C 0.171 3.829 19 N -0.602 5.602 20 C -0.242 4.242 21 H 0.085 0.915 22 C -0.057 4.057 23 N -0.946 5.946 24 Si 0.975 3.025 25 H -0.263 1.263 26 H -0.290 1.290 27 H -0.295 1.295 28 N -0.349 5.349 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.426 0.574 35 H 0.163 0.837 36 H 0.211 0.789 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.039 0.961 45 H -0.004 1.004 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.076 -7.252 -3.214 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.303 3.697 4 O -0.430 6.430 5 N -0.282 5.282 6 C 0.021 3.979 7 C -0.322 4.322 8 C -0.075 4.075 9 N -0.138 5.138 10 C 0.016 3.984 11 C 0.049 3.951 12 H 0.044 0.956 13 C -0.143 4.143 14 C 0.016 3.984 15 H 0.105 0.895 16 O -0.319 6.319 17 C -0.069 4.069 18 C 0.045 3.955 19 N -0.328 5.328 20 C -0.371 4.371 21 H 0.103 0.897 22 C -0.251 4.251 23 N -0.593 5.593 24 Si 0.804 3.196 25 H -0.188 1.188 26 H -0.217 1.217 27 H -0.223 1.223 28 N -0.179 5.179 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.264 0.736 35 H 0.180 0.820 36 H 0.227 0.773 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.014 0.986 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.159 -7.016 -2.950 19.690 hybrid contribution 0.982 0.316 -0.546 1.167 sum -17.177 -6.701 -3.496 18.767 Atomic orbital electron populations 1.21567 0.92887 1.02982 1.02144 1.21717 0.98409 0.89519 1.07279 1.21884 0.80013 0.93949 0.73901 1.90631 1.55693 1.47648 1.48986 1.42890 1.08685 1.04018 1.72574 1.19549 0.91295 0.87380 0.99706 1.21768 1.01739 0.89509 1.19138 1.23187 0.83086 1.01829 0.99370 1.48336 1.06703 1.02811 1.55988 1.22278 0.82736 0.93382 0.99990 1.21074 0.86275 0.94967 0.92741 0.95610 1.22494 0.98959 0.95939 0.96877 1.23442 0.95844 0.96822 0.82337 0.89549 1.87825 1.93390 1.26030 1.24669 1.22967 1.00289 0.80777 1.02879 1.21482 0.92231 0.94020 0.87768 1.44552 1.15049 1.46849 1.26369 1.19373 0.90204 1.31531 0.95949 0.89709 1.25669 0.99108 1.01863 0.98480 1.70182 1.22925 1.46379 1.19805 0.85072 0.78664 0.76898 0.79016 1.18753 1.21651 1.22277 1.77322 1.17817 0.91897 1.30912 0.93183 0.89298 0.93372 0.85740 0.85971 0.73586 0.81962 0.77264 0.90840 0.86479 0.89526 0.92176 0.94719 0.92207 0.87984 0.94230 0.98613 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 71.98 0.66 -0.93 16 2 C -0.13 -1.31 6.42 29.85 0.19 -1.12 16 3 C 0.51 10.60 7.80 87.66 0.68 11.28 16 4 O -0.55 -15.60 13.15 -3.09 -0.04 -15.64 16 5 N -0.63 -14.09 5.45 -307.50 -1.68 -15.77 16 6 C 0.28 8.36 8.10 133.32 1.08 9.44 16 7 C -0.29 -8.51 9.60 22.11 0.21 -8.30 16 8 C 0.07 1.90 11.29 83.52 0.94 2.84 16 9 N -0.36 -11.22 3.11 -348.09 -1.08 -12.31 16 10 C 0.14 4.68 5.92 86.38 0.51 5.19 16 11 C 0.16 6.40 3.30 45.34 0.15 6.55 16 12 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 13 C -0.10 -3.82 6.13 31.78 0.19 -3.63 16 14 C 0.07 2.80 3.54 31.99 0.11 2.91 16 15 H 0.09 2.83 7.83 -2.39 -0.02 2.81 16 16 O -0.40 -14.57 10.52 -148.98 -1.57 -16.13 16 17 C 0.03 0.72 10.85 113.37 1.23 1.95 16 18 C 0.17 8.36 5.13 86.86 0.45 8.81 16 19 N -0.60 -29.76 3.14 -668.25 -2.10 -31.86 16 20 C -0.24 -12.96 9.76 84.03 0.82 -12.14 16 21 H 0.09 4.36 7.40 -2.91 -0.02 4.33 16 22 C -0.06 -3.15 5.38 84.86 0.46 -2.70 16 23 N -0.95 -56.00 10.79 21.65 0.23 -55.77 16 24 Si 0.98 44.53 29.57 68.60 2.03 46.56 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 28 N -0.35 -11.99 12.41 -54.45 -0.68 -12.67 16 29 H 0.05 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.71 8.10 -2.38 -0.02 0.69 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.43 6.99 8.82 -92.71 -0.82 6.17 16 35 H 0.16 4.85 5.97 -2.91 -0.02 4.83 16 36 H 0.21 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.07 2.69 7.48 -2.39 -0.02 2.67 16 38 H 0.12 3.36 8.07 -2.39 -0.02 3.34 16 39 H 0.09 2.75 7.30 -2.39 -0.02 2.73 16 40 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 43 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.04 2.12 7.08 -2.39 -0.02 2.10 16 45 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -75.14 377.50 2.98 -72.16 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.17 Total: 21.27 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.69 Total: 20.16 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.30 Total: -128.36 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -1.61 Total: -31.77 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -75.14 2.98 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070600272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.727 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds