Wall clock time and date at job start Tue Mar 31 2020 14:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35770 * 116.99729 * 2 1 4 4 C 1.35594 * 126.08102 * 183.43454 * 3 2 1 5 5 C 1.41058 * 107.79494 * 180.16641 * 4 3 2 6 6 C 1.47721 * 125.97847 * 179.88609 * 5 4 3 7 7 O 1.21569 * 120.00299 * 359.71561 * 6 5 4 8 8 N 1.34780 * 120.00098 * 179.71922 * 6 5 4 9 9 C 1.46497 * 120.00420 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.51953 * 325.08353 * 9 8 6 11 11 C 1.53034 * 109.50072 * 204.99962 * 9 8 6 12 12 C 1.53044 * 109.52923 * 178.67780 * 11 9 8 13 13 C 1.53191 * 109.31223 * 61.36864 * 12 11 9 14 14 H 1.08996 * 109.58668 * 65.15394 * 13 12 11 15 15 C 1.53004 * 109.58618 * 185.57888 * 13 12 11 16 16 N 1.46930 * 108.77777 * 305.36672 * 13 12 11 17 17 C 1.36931 * 120.63010 * 233.59031 * 16 13 12 18 18 H 1.08001 * 120.00302 * 36.49603 * 17 16 13 19 19 C 1.38821 * 119.99893 * 216.49708 * 17 16 13 20 20 N 1.31614 * 119.99927 * 215.27066 * 19 17 16 21 21 Si 1.86803 * 119.99841 * 35.26715 * 19 17 16 22 22 H 1.48499 * 109.46932 * 84.66769 * 21 19 17 23 23 H 1.48493 * 109.47009 * 204.66938 * 21 19 17 24 24 H 1.48497 * 109.46954 * 324.66984 * 21 19 17 25 25 C 1.46922 * 118.73547 * 53.60867 * 16 13 12 26 26 N 1.31860 * 108.03769 * 359.62821 * 5 4 3 27 27 N 1.35837 * 126.08801 * 3.19647 * 3 2 1 28 28 C 1.46508 * 125.94581 * 359.94366 * 27 3 2 29 29 H 1.08998 * 109.47409 * 47.51941 * 1 2 3 30 30 H 1.09002 * 109.46996 * 167.52418 * 1 2 3 31 31 H 1.09008 * 109.46999 * 287.52169 * 1 2 3 32 32 H 1.07999 * 126.10488 * 0.04011 * 4 3 2 33 33 H 0.96998 * 119.99685 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.46212 * 58.66167 * 11 9 8 35 35 H 1.09003 * 109.46066 * 298.69009 * 11 9 8 36 36 H 1.08996 * 109.49872 * 181.32360 * 12 11 9 37 37 H 1.09002 * 109.49418 * 301.38910 * 12 11 9 38 38 H 1.09002 * 109.46807 * 60.00277 * 15 13 12 39 39 H 1.08999 * 109.46815 * 179.97438 * 15 13 12 40 40 H 1.09000 * 109.46871 * 300.00555 * 15 13 12 41 41 H 0.97003 * 119.99743 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58974 * 66.17826 * 25 16 13 43 43 H 1.09000 * 109.58627 * 186.46174 * 25 16 13 44 44 H 1.08995 * 109.47150 * 276.16252 * 28 27 3 45 45 H 1.09002 * 109.47010 * 36.16422 * 28 27 3 46 46 H 1.09005 * 109.46770 * 156.16408 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3826 1.4247 -0.0657 5 6 3.5971 2.8186 -0.0352 6 6 4.9090 3.4959 -0.0832 7 8 5.9300 2.8395 -0.1506 8 7 4.9741 4.8418 -0.0522 9 6 6.2750 5.5136 -0.1003 10 1 7.0129 4.9174 0.4364 11 6 6.1616 6.8937 0.5511 12 6 7.5280 7.5829 0.5307 13 6 7.9799 7.7691 -0.9212 14 1 7.3043 8.4577 -1.4286 15 6 9.4032 8.3299 -0.9474 16 7 7.9519 6.4644 -1.5963 17 6 9.0599 5.9921 -2.2476 18 1 10.0443 6.1819 -1.8461 19 6 8.9178 5.2692 -3.4242 20 7 9.7410 4.2774 -3.6907 21 14 7.5582 5.7040 -4.6292 22 1 8.0170 6.8017 -5.5180 23 1 7.2224 4.5116 -5.4479 24 1 6.3545 6.1446 -3.8794 25 6 6.7124 5.6765 -1.5595 26 7 2.4214 3.4111 0.0379 27 7 1.4320 2.4202 0.0612 28 6 -0.0130 2.6492 0.1378 29 1 -0.3634 0.6940 -0.7579 30 1 -0.3633 -1.0034 -0.2220 31 1 -0.3633 0.3094 0.9801 32 1 4.1471 0.6644 -0.1279 33 1 4.1594 5.3656 0.0020 34 1 5.8266 6.7822 1.5822 35 1 5.4419 7.4980 -0.0012 36 1 7.4519 8.5560 1.0158 37 1 8.2539 6.9673 1.0620 38 1 10.0765 7.6356 -0.4447 39 1 9.7229 8.4612 -1.9812 40 1 9.4243 9.2917 -0.4351 41 1 9.6419 3.7725 -4.5130 42 1 5.9334 6.1944 -2.1190 43 1 6.8894 4.6960 -2.0017 44 1 -0.4386 2.6234 -0.8653 45 1 -0.4724 1.8712 0.7475 46 1 -0.2031 3.6235 0.5881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071673762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:14 Heat of formation + Delta-G solvation = 52.520599 kcal Electronic energy + Delta-G solvation = -27901.804633 eV Core-core repulsion = 24023.573165 eV Total energy + Delta-G solvation = -3878.231467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78300 -39.52515 -38.47710 -37.58452 -34.48384 -33.71167 -32.71685 -31.04385 -30.59935 -29.98300 -28.20148 -26.84387 -25.98799 -24.84608 -23.20681 -22.36030 -21.65767 -20.55881 -19.92787 -19.24049 -18.27425 -17.04290 -16.48865 -16.38732 -16.07380 -15.63324 -15.14382 -15.05044 -14.80994 -14.43706 -14.26926 -14.11858 -13.75070 -13.62553 -13.40205 -13.33560 -13.14879 -12.85174 -12.33331 -12.00323 -11.84492 -11.71851 -11.62914 -11.38600 -11.14233 -10.97587 -10.68112 -10.55940 -10.36096 -10.20977 -10.00141 -9.74054 -9.65215 -9.37513 -9.35200 -8.69174 -8.58097 -8.21145 -6.70275 -5.95581 -3.21777 1.28896 1.89911 2.11621 2.58245 3.40654 3.50109 3.59818 3.60793 3.63836 3.95421 4.32841 4.42829 4.62455 4.67673 4.70016 4.77668 5.00619 5.04278 5.12616 5.24874 5.31758 5.38215 5.53757 5.61239 5.74006 5.76479 5.87789 6.05275 6.16320 6.23263 6.28112 6.35786 6.38447 6.44939 6.58743 6.66877 6.73550 6.85596 7.03037 7.05037 7.11820 7.17617 7.22403 7.85643 8.11983 8.49097 8.51229 9.08926 9.84317 10.28965 11.19586 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.003381 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.829987 B = 8279.807902 C = 9148.132149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.287 6.287 3 C 0.266 3.734 4 C -0.232 4.232 5 C 0.067 3.933 6 C 0.592 3.408 7 O -0.509 6.509 8 N -0.708 5.708 9 C 0.123 3.877 10 H 0.093 0.907 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.163 3.837 14 H 0.027 0.973 15 C -0.135 4.135 16 N -0.590 5.590 17 C -0.275 4.275 18 H 0.081 0.919 19 C 0.050 3.950 20 N -0.876 5.876 21 Si 0.837 3.163 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.260 1.260 25 C 0.139 3.861 26 N -0.253 5.253 27 N -0.396 5.396 28 C 0.079 3.921 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.323 -1.989 10.464 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.099 3.901 4 C -0.262 4.262 5 C -0.101 4.101 6 C 0.374 3.626 7 O -0.381 6.381 8 N -0.360 5.360 9 C 0.018 3.982 10 H 0.111 0.889 11 C -0.154 4.154 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.044 0.956 15 C -0.192 4.192 16 N -0.314 5.314 17 C -0.403 4.403 18 H 0.098 0.902 19 C -0.152 4.152 20 N -0.515 5.515 21 Si 0.664 3.336 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.185 1.185 25 C 0.012 3.988 26 N -0.084 5.084 27 N -0.194 5.194 28 C -0.061 4.061 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.185 0.815 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.094 -1.814 10.355 24.468 hybrid contribution -1.343 -0.327 -0.947 1.676 sum -23.437 -2.141 9.408 25.345 Atomic orbital electron populations 1.23639 0.78139 1.05221 1.01477 1.86319 1.21477 1.21604 1.89953 1.19551 0.91084 0.78874 1.00546 1.20420 0.92062 0.95829 1.17849 1.22046 0.92906 0.93129 1.02007 1.16892 0.85751 0.82397 0.77609 1.90894 1.33873 1.64962 1.48352 1.45996 1.10520 1.05612 1.73832 1.21915 0.83282 0.92588 1.00460 0.88898 1.21679 0.98643 0.95471 0.99646 1.22026 0.95867 0.99274 0.99377 1.20593 0.95520 0.87693 0.90498 0.95554 1.21777 0.96864 0.98343 1.02236 1.44297 1.11009 1.14701 1.61435 1.18619 0.86833 1.32161 1.02680 0.90157 1.25453 0.95922 0.96308 0.97557 1.70094 1.40048 1.16207 1.25148 0.87499 0.84707 0.78003 0.83411 1.21717 1.22427 1.18460 1.21675 0.88615 0.96595 0.91906 1.77687 0.95122 1.10987 1.24653 1.49039 1.06915 1.03022 1.60396 1.22468 0.74851 1.05354 1.03435 0.91753 0.87419 0.91893 0.81516 0.76597 0.92503 0.92171 0.92374 0.91611 0.92387 0.91861 0.94312 0.92780 0.95679 0.90931 0.90408 0.88800 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.46 101.05 0.96 1.00 16 2 O -0.29 -2.92 10.57 -19.02 -0.20 -3.12 16 3 C 0.27 3.30 7.77 -16.72 -0.13 3.17 16 4 C -0.23 -3.50 10.59 -39.46 -0.42 -3.91 16 5 C 0.07 1.08 7.09 -82.91 -0.59 0.49 16 6 C 0.59 11.05 7.79 -12.38 -0.10 10.95 16 7 O -0.51 -11.54 16.56 5.30 0.09 -11.46 16 8 N -0.71 -11.96 5.08 -54.67 -0.28 -12.23 16 9 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 10 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16 11 C -0.12 -1.80 5.35 -26.69 -0.14 -1.95 16 12 C -0.13 -2.06 5.37 -26.61 -0.14 -2.20 16 13 C 0.16 3.21 3.50 -67.60 -0.24 2.97 16 14 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 15 C -0.13 -2.51 8.02 37.16 0.30 -2.21 16 16 N -0.59 -14.21 2.56 -164.77 -0.42 -14.63 16 17 C -0.28 -7.73 8.60 -15.06 -0.13 -7.86 16 18 H 0.08 2.38 6.65 -52.49 -0.35 2.03 16 19 C 0.05 1.48 4.79 -17.43 -0.08 1.40 16 20 N -0.88 -27.40 13.97 55.49 0.78 -26.63 16 21 Si 0.84 22.24 27.14 -169.99 -4.61 17.62 16 22 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 24 H -0.26 -6.61 5.00 56.52 0.28 -6.33 16 25 C 0.14 3.20 4.07 -3.71 -0.02 3.19 16 26 N -0.25 -3.57 12.26 33.34 0.41 -3.16 16 27 N -0.40 -4.44 4.03 -68.18 -0.28 -4.72 16 28 C 0.08 0.45 9.57 59.85 0.57 1.02 16 29 H 0.06 0.24 5.81 -51.93 -0.30 -0.06 16 30 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.20 6.48 -51.92 -0.34 -0.14 16 32 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 33 H 0.40 5.67 8.30 -40.82 -0.34 5.33 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.14 7.37 -51.93 -0.38 0.75 16 39 H 0.06 1.28 7.71 -51.93 -0.40 0.88 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.03 0.58 6.63 -51.93 -0.34 0.24 16 43 H 0.07 1.94 6.61 -51.93 -0.34 1.60 16 44 H 0.08 0.33 7.52 -51.93 -0.39 -0.06 16 45 H 0.09 0.29 4.78 -51.93 -0.25 0.04 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -35.83 362.89 -6.27 -42.10 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.89 Total: 2.54 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.33 Total: 8.22 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.21 Total: -61.37 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.11 Total: -14.58 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.61 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.83 -6.27 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.617 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds