Wall clock time and date at job start Tue Mar 31 2020 14:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35770 * 116.99729 * 2 1 4 4 C 1.35594 * 126.08102 * 183.43454 * 3 2 1 5 5 C 1.41058 * 107.79494 * 180.16641 * 4 3 2 6 6 C 1.47721 * 125.97847 * 179.88609 * 5 4 3 7 7 O 1.21569 * 120.00299 * 359.71561 * 6 5 4 8 8 N 1.34780 * 120.00098 * 179.71922 * 6 5 4 9 9 C 1.46497 * 120.00420 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.51953 * 325.08353 * 9 8 6 11 11 C 1.53034 * 109.50072 * 204.99962 * 9 8 6 12 12 C 1.53044 * 109.52923 * 178.67780 * 11 9 8 13 13 C 1.53191 * 109.31223 * 61.36864 * 12 11 9 14 14 H 1.08996 * 109.58668 * 65.15394 * 13 12 11 15 15 C 1.53004 * 109.58618 * 185.57888 * 13 12 11 16 16 N 1.46930 * 108.77777 * 305.36672 * 13 12 11 17 17 C 1.36931 * 120.63010 * 233.59031 * 16 13 12 18 18 H 1.08001 * 120.00302 * 36.49603 * 17 16 13 19 19 C 1.38821 * 119.99893 * 216.49708 * 17 16 13 20 20 N 1.31614 * 119.99927 * 215.27066 * 19 17 16 21 21 Si 1.86803 * 119.99841 * 35.26715 * 19 17 16 22 22 H 1.48499 * 109.46932 * 84.66769 * 21 19 17 23 23 H 1.48493 * 109.47009 * 204.66938 * 21 19 17 24 24 H 1.48497 * 109.46954 * 324.66984 * 21 19 17 25 25 C 1.46922 * 118.73547 * 53.60867 * 16 13 12 26 26 N 1.31860 * 108.03769 * 359.62821 * 5 4 3 27 27 N 1.35837 * 126.08801 * 3.19647 * 3 2 1 28 28 C 1.46508 * 125.94581 * 359.94366 * 27 3 2 29 29 H 1.08998 * 109.47409 * 47.51941 * 1 2 3 30 30 H 1.09002 * 109.46996 * 167.52418 * 1 2 3 31 31 H 1.09008 * 109.46999 * 287.52169 * 1 2 3 32 32 H 1.07999 * 126.10488 * 0.04011 * 4 3 2 33 33 H 0.96998 * 119.99685 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.46212 * 58.66167 * 11 9 8 35 35 H 1.09003 * 109.46066 * 298.69009 * 11 9 8 36 36 H 1.08996 * 109.49872 * 181.32360 * 12 11 9 37 37 H 1.09002 * 109.49418 * 301.38910 * 12 11 9 38 38 H 1.09002 * 109.46807 * 60.00277 * 15 13 12 39 39 H 1.08999 * 109.46815 * 179.97438 * 15 13 12 40 40 H 1.09000 * 109.46871 * 300.00555 * 15 13 12 41 41 H 0.97003 * 119.99743 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58974 * 66.17826 * 25 16 13 43 43 H 1.09000 * 109.58627 * 186.46174 * 25 16 13 44 44 H 1.08995 * 109.47150 * 276.16252 * 28 27 3 45 45 H 1.09002 * 109.47010 * 36.16422 * 28 27 3 46 46 H 1.09005 * 109.46770 * 156.16408 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3826 1.4247 -0.0657 5 6 3.5971 2.8186 -0.0352 6 6 4.9090 3.4959 -0.0832 7 8 5.9300 2.8395 -0.1506 8 7 4.9741 4.8418 -0.0522 9 6 6.2750 5.5136 -0.1003 10 1 7.0129 4.9174 0.4364 11 6 6.1616 6.8937 0.5511 12 6 7.5280 7.5829 0.5307 13 6 7.9799 7.7691 -0.9212 14 1 7.3043 8.4577 -1.4286 15 6 9.4032 8.3299 -0.9474 16 7 7.9519 6.4644 -1.5963 17 6 9.0599 5.9921 -2.2476 18 1 10.0443 6.1819 -1.8461 19 6 8.9178 5.2692 -3.4242 20 7 9.7410 4.2774 -3.6907 21 14 7.5582 5.7040 -4.6292 22 1 8.0170 6.8017 -5.5180 23 1 7.2224 4.5116 -5.4479 24 1 6.3545 6.1446 -3.8794 25 6 6.7124 5.6765 -1.5595 26 7 2.4214 3.4111 0.0379 27 7 1.4320 2.4202 0.0612 28 6 -0.0130 2.6492 0.1378 29 1 -0.3634 0.6940 -0.7579 30 1 -0.3633 -1.0034 -0.2220 31 1 -0.3633 0.3094 0.9801 32 1 4.1471 0.6644 -0.1279 33 1 4.1594 5.3656 0.0020 34 1 5.8266 6.7822 1.5822 35 1 5.4419 7.4980 -0.0012 36 1 7.4519 8.5560 1.0158 37 1 8.2539 6.9673 1.0620 38 1 10.0765 7.6356 -0.4447 39 1 9.7229 8.4612 -1.9812 40 1 9.4243 9.2917 -0.4351 41 1 9.6419 3.7725 -4.5130 42 1 5.9334 6.1944 -2.1190 43 1 6.8894 4.6960 -2.0017 44 1 -0.4386 2.6234 -0.8653 45 1 -0.4724 1.8712 0.7475 46 1 -0.2031 3.6235 0.5881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:13 Heat of formation + Delta-G solvation = 23.811533 kcal Electronic energy + Delta-G solvation = -27903.049551 eV Core-core repulsion = 24023.573165 eV Total energy + Delta-G solvation = -3879.476386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.75871 -40.95366 -39.52868 -39.02860 -36.11855 -34.67401 -34.50114 -32.55285 -32.38741 -31.02245 -29.02689 -27.94404 -27.24722 -26.51333 -24.63375 -23.91022 -22.56726 -22.07267 -21.40708 -20.74938 -19.29130 -18.44027 -17.76377 -17.59851 -17.51092 -16.68670 -16.43925 -16.29636 -16.18929 -16.01956 -15.41505 -15.33908 -15.11064 -14.95855 -14.63326 -14.56353 -14.39276 -14.03583 -13.93146 -13.71424 -13.40689 -12.97255 -12.73576 -12.60277 -12.46858 -12.41252 -12.31064 -12.10203 -11.86418 -11.79887 -11.63170 -11.49609 -11.27142 -11.16174 -10.56004 -10.31885 -10.08954 -9.57666 -8.69802 -8.23624 -5.44252 0.15354 1.00332 1.05508 1.34136 1.38691 1.46598 1.73831 2.20454 2.26121 2.48243 2.93107 3.07601 3.47624 3.78547 3.88963 3.98030 4.07621 4.13030 4.18518 4.23988 4.30132 4.33770 4.37749 4.47733 4.51916 4.63060 4.67928 4.71949 4.73337 4.88411 4.96165 4.99973 5.03218 5.08387 5.14404 5.18329 5.22284 5.29340 5.42773 5.56767 5.69235 5.94487 6.06826 6.25144 6.26413 6.53331 7.00435 7.11526 7.69959 8.16241 8.96029 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.003381 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.829987 B = 8279.807902 C = 9148.132149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.300 6.300 3 C 0.284 3.716 4 C -0.269 4.269 5 C 0.045 3.955 6 C 0.590 3.410 7 O -0.563 6.563 8 N -0.693 5.693 9 C 0.133 3.867 10 H 0.059 0.941 11 C -0.107 4.107 12 C -0.118 4.118 13 C 0.152 3.848 14 H 0.044 0.956 15 C -0.129 4.129 16 N -0.604 5.604 17 C -0.255 4.255 18 H 0.054 0.946 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.895 3.105 22 H -0.286 1.286 23 H -0.309 1.309 24 H -0.241 1.241 25 C 0.142 3.858 26 N -0.252 5.252 27 N -0.380 5.380 28 C 0.062 3.938 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.417 0.583 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.259 0.741 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.099 0.901 45 H 0.125 0.875 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.046 0.165 12.091 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.206 6.206 3 C 0.116 3.884 4 C -0.299 4.299 5 C -0.121 4.121 6 C 0.374 3.626 7 O -0.439 6.439 8 N -0.345 5.345 9 C 0.027 3.973 10 H 0.078 0.922 11 C -0.145 4.145 12 C -0.158 4.158 13 C 0.047 3.953 14 H 0.062 0.938 15 C -0.187 4.187 16 N -0.329 5.329 17 C -0.384 4.384 18 H 0.071 0.929 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.722 3.278 22 H -0.213 1.213 23 H -0.237 1.237 24 H -0.166 1.166 25 C 0.015 3.985 26 N -0.084 5.084 27 N -0.179 5.179 28 C -0.076 4.076 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.118 0.882 45 H 0.143 0.857 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.915 0.406 12.012 29.477 hybrid contribution -0.036 -1.055 -1.354 1.716 sum -26.951 -0.648 10.658 28.989 Atomic orbital electron populations 1.24123 0.75086 1.07346 1.03425 1.86347 1.24622 1.20167 1.89450 1.19333 0.90472 0.80073 0.98546 1.20420 0.93646 0.95462 1.20396 1.21546 0.92389 0.93449 1.04742 1.17297 0.86268 0.82706 0.76316 1.90861 1.36093 1.66137 1.50827 1.45791 1.10501 1.05216 1.72973 1.21562 0.83520 0.94736 0.97448 0.92242 1.21671 0.98841 0.92601 1.01361 1.21954 0.95735 1.01407 0.96674 1.20952 0.96548 0.85436 0.92325 0.93837 1.21724 0.95896 1.00032 1.01027 1.44465 1.10054 1.16996 1.61434 1.18588 0.87380 1.30375 1.02080 0.92881 1.25996 0.98483 0.96712 0.99467 1.70198 1.43104 1.18165 1.25770 0.86562 0.82904 0.77073 0.81270 1.21285 1.23717 1.16552 1.21541 0.88407 0.94028 0.94498 1.77569 0.94808 1.11777 1.24266 1.49421 1.08357 1.01974 1.58151 1.23067 0.71463 1.07350 1.05675 0.90191 0.85257 0.89613 0.83004 0.74546 0.89368 0.89834 0.87977 0.93197 0.94441 0.94275 0.89907 0.93189 0.94857 0.95823 0.88246 0.85695 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 9.46 113.37 1.07 1.03 16 2 O -0.30 -5.48 10.57 -90.97 -0.96 -6.44 16 3 C 0.28 6.69 7.77 83.46 0.65 7.34 16 4 C -0.27 -8.40 10.59 22.35 0.24 -8.16 16 5 C 0.04 1.46 7.09 42.34 0.30 1.76 16 6 C 0.59 22.91 7.79 86.75 0.68 23.58 16 7 O -0.56 -27.51 16.56 -3.93 -0.07 -27.58 16 8 N -0.69 -23.09 5.08 -445.16 -2.26 -25.35 16 9 C 0.13 5.01 2.60 45.07 0.12 5.13 16 10 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 11 C -0.11 -2.92 5.35 30.62 0.16 -2.76 16 12 C -0.12 -3.47 5.37 30.67 0.16 -3.30 16 13 C 0.15 5.66 3.50 44.97 0.16 5.81 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.13 -4.67 8.02 71.98 0.58 -4.09 16 16 N -0.60 -29.32 2.56 -675.21 -1.73 -31.05 16 17 C -0.25 -14.89 8.60 84.04 0.72 -14.17 16 18 H 0.05 3.33 6.65 -2.91 -0.02 3.32 16 19 C -0.01 -0.52 4.79 84.87 0.41 -0.12 16 20 N -0.93 -61.61 13.97 21.65 0.30 -61.31 16 21 Si 0.89 47.68 27.14 68.60 1.86 49.54 16 22 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16 23 H -0.31 -16.99 7.11 99.48 0.71 -16.28 16 24 H -0.24 -11.95 5.00 99.48 0.50 -11.45 16 25 C 0.14 6.60 4.07 86.36 0.35 6.95 16 26 N -0.25 -6.68 12.26 -48.43 -0.59 -7.28 16 27 N -0.38 -7.52 4.03 -480.55 -1.94 -9.46 16 28 C 0.06 0.43 9.57 127.77 1.22 1.65 16 29 H 0.08 0.25 5.81 -2.39 -0.01 0.23 16 30 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.13 6.48 -2.38 -0.02 0.12 16 32 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 33 H 0.42 10.95 8.30 -92.71 -0.77 10.18 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.47 7.37 -2.39 -0.02 1.46 16 39 H 0.04 1.57 7.71 -2.39 -0.02 1.55 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 42 H 0.03 1.49 6.63 -2.39 -0.02 1.48 16 43 H 0.02 1.31 6.61 -2.39 -0.02 1.29 16 44 H 0.10 0.35 7.52 -2.39 -0.02 0.33 16 45 H 0.13 0.11 4.78 -2.39 -0.01 0.10 16 46 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -86.06 362.89 1.46 -84.60 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.03 Total: 13.66 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.82 Total: 20.67 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -6.22 Total: -134.45 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.03 Total: -34.02 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.86 Total: 49.54 kcal Total: -86.06 1.46 -84.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.407 kcal (2) G-P(sol) polarization free energy of solvation -86.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds