Wall clock time and date at job start Tue Mar 31 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35769 * 117.00348 * 2 1 4 4 C 1.35591 * 126.08712 * 177.28325 * 3 2 1 5 5 C 1.41066 * 107.79606 * 180.24218 * 4 3 2 6 6 C 1.47725 * 125.97667 * 179.73590 * 5 4 3 7 7 O 1.21571 * 120.00250 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99825 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.49907 * 34.93952 * 9 8 6 11 11 C 1.53046 * 109.49709 * 155.00253 * 9 8 6 12 12 C 1.53041 * 109.53822 * 58.58623 * 11 9 8 13 13 C 1.53199 * 109.31356 * 61.36422 * 12 11 9 14 14 H 1.09001 * 109.58444 * 65.29234 * 13 12 11 15 15 C 1.52995 * 109.58764 * 185.57676 * 13 12 11 16 16 N 1.46925 * 108.77604 * 305.36947 * 13 12 11 17 17 C 1.36935 * 120.62673 * 233.58744 * 16 13 12 18 18 H 1.08004 * 120.00595 * 26.97994 * 17 16 13 19 19 C 1.38816 * 119.99786 * 206.97710 * 17 16 13 20 20 N 1.31619 * 119.99945 * 15.69194 * 19 17 16 21 21 Si 1.86801 * 120.00066 * 195.68871 * 19 17 16 22 22 H 1.48499 * 109.47194 * 90.00295 * 21 19 17 23 23 H 1.48501 * 109.47000 * 210.00149 * 21 19 17 24 24 H 1.48497 * 109.47218 * 330.00034 * 21 19 17 25 25 C 1.46919 * 118.74071 * 53.60168 * 16 13 12 26 26 N 1.31857 * 108.03817 * 359.75752 * 5 4 3 27 27 N 1.35852 * 126.08110 * 357.10987 * 3 2 1 28 28 C 1.46493 * 125.94859 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47253 * 171.04202 * 1 2 3 30 30 H 1.09004 * 109.47487 * 291.04833 * 1 2 3 31 31 H 1.09000 * 109.46890 * 51.04351 * 1 2 3 32 32 H 1.07995 * 126.10212 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99958 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.45934 * 178.60404 * 11 9 8 35 35 H 1.08997 * 109.45770 * 298.58188 * 11 9 8 36 36 H 1.08994 * 109.50089 * 181.31773 * 12 11 9 37 37 H 1.09005 * 109.50019 * 301.41785 * 12 11 9 38 38 H 1.09005 * 109.47236 * 60.00131 * 15 13 12 39 39 H 1.09003 * 109.47344 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.47467 * 300.00377 * 15 13 12 41 41 H 0.96998 * 119.99957 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.58894 * 186.60622 * 25 16 13 43 43 H 1.09001 * 109.58994 * 66.18342 * 25 16 13 44 44 H 1.08992 * 109.47344 * 276.94582 * 28 27 3 45 45 H 1.09004 * 109.47380 * 36.94658 * 28 27 3 46 46 H 1.09003 * 109.47001 * 156.94013 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3832 1.4243 0.0519 5 6 3.5971 2.8186 0.0366 6 6 4.9090 3.4959 0.0850 7 8 5.9304 2.8391 0.1435 8 7 4.9737 4.8419 0.0631 9 6 6.2747 5.5136 0.1105 10 1 7.0100 4.9212 -0.4340 11 6 6.1583 6.8983 -0.5308 12 6 5.1018 7.7193 0.2122 13 6 5.5324 7.8970 1.6717 14 1 6.4408 8.4978 1.7141 15 6 4.4183 8.5957 2.4536 16 7 5.7870 6.5724 2.2542 17 6 5.1680 6.1898 3.4142 18 1 4.2110 6.6135 3.6809 19 6 5.7705 5.2572 4.2475 20 7 7.0468 4.9711 4.1006 21 14 4.7700 4.4085 5.5772 22 1 4.1727 3.1643 5.0291 23 1 5.6537 4.0708 6.7219 24 1 3.6883 5.3157 6.0377 25 6 6.7185 5.6664 1.5688 26 7 2.4211 3.4114 -0.0279 27 7 1.4317 2.4204 -0.0554 28 6 -0.0135 2.6496 -0.1251 29 1 -0.3634 -1.0151 -0.1600 30 1 -0.3634 0.3691 0.9591 31 1 -0.3633 0.6461 -0.7991 32 1 4.1483 0.6637 0.1011 33 1 4.1587 5.3659 0.0160 34 1 7.1204 7.4072 -0.4730 35 1 5.8662 6.7913 -1.5754 36 1 5.0028 8.6969 -0.2594 37 1 4.1448 7.1987 0.1761 38 1 3.5123 7.9910 2.4142 39 1 4.7264 8.7208 3.4917 40 1 4.2223 9.5729 2.0122 41 1 7.4679 4.3197 4.6831 42 1 6.7075 4.6923 2.0580 43 1 7.7251 6.0831 1.6026 44 1 -0.3461 2.5602 -1.1592 45 1 -0.5288 1.9097 0.4875 46 1 -0.2411 3.6494 0.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071673766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:17 Heat of formation + Delta-G solvation = 51.574079 kcal Electronic energy + Delta-G solvation = -28807.036925 eV Core-core repulsion = 24928.764413 eV Total energy + Delta-G solvation = -3878.272512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.55272 -39.34397 -38.31245 -37.30313 -34.03946 -33.49959 -32.66863 -30.91544 -29.90048 -29.66228 -28.00242 -26.62218 -25.98800 -24.91348 -23.12892 -22.07787 -21.46645 -20.43890 -19.82950 -18.62666 -18.18496 -16.82300 -16.41036 -16.10777 -15.72746 -15.41262 -14.98586 -14.84957 -14.65227 -14.17282 -14.01770 -13.84422 -13.79079 -13.38156 -13.24650 -13.07275 -12.91636 -12.69578 -12.41491 -11.85329 -11.60550 -11.43505 -11.16168 -11.10880 -10.87847 -10.81815 -10.70567 -10.63616 -10.29668 -10.25016 -9.87604 -9.60319 -9.40063 -9.35114 -9.11939 -8.36541 -8.36169 -8.26757 -6.54392 -5.65541 -3.07759 1.55647 2.12804 2.35507 2.77168 3.44719 3.50664 3.52774 3.72776 3.96297 4.19915 4.47019 4.58180 4.63946 4.78455 4.88117 4.96607 5.18578 5.33834 5.38872 5.44222 5.48063 5.58862 5.62786 5.69083 5.94027 5.98599 6.08954 6.19251 6.21803 6.39772 6.41315 6.48090 6.52175 6.60830 6.68682 6.76768 6.97587 7.10286 7.19347 7.23772 7.40796 7.49831 7.81586 7.92498 8.21975 8.57446 8.82818 9.32488 9.97430 10.51833 11.42116 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004703 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.095654 B = 5952.017975 C = 6763.806459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.263 3.737 4 C -0.233 4.233 5 C 0.072 3.928 6 C 0.596 3.404 7 O -0.530 6.530 8 N -0.682 5.682 9 C 0.117 3.883 10 H 0.078 0.922 11 C -0.118 4.118 12 C -0.132 4.132 13 C 0.166 3.834 14 H 0.025 0.975 15 C -0.136 4.136 16 N -0.583 5.583 17 C -0.246 4.246 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.894 3.106 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.159 3.841 26 N -0.248 5.248 27 N -0.398 5.398 28 C 0.080 3.920 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.164 0.836 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.253 0.747 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 -3.348 -11.591 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.097 3.903 4 C -0.263 4.263 5 C -0.096 4.096 6 C 0.379 3.621 7 O -0.405 6.405 8 N -0.333 5.333 9 C 0.011 3.989 10 H 0.096 0.904 11 C -0.156 4.156 12 C -0.171 4.171 13 C 0.059 3.941 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.306 5.306 17 C -0.375 4.375 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.725 3.275 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.032 3.968 26 N -0.078 5.078 27 N -0.195 5.195 28 C -0.061 4.061 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.182 0.818 33 H 0.237 0.763 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.121 0.879 43 H 0.044 0.956 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.100 -3.099 -11.474 18.441 hybrid contribution -0.960 -0.991 0.838 1.614 sum -15.060 -4.090 -10.637 18.886 Atomic orbital electron populations 1.23633 0.78330 1.05038 1.01516 1.86292 1.21357 1.21814 1.90084 1.19527 0.91064 0.78838 1.00918 1.20370 0.91898 0.95856 1.18199 1.22072 0.93096 0.92958 1.01515 1.16766 0.85525 0.82483 0.77374 1.90784 1.34046 1.65294 1.50370 1.45719 1.10426 1.05072 1.72049 1.21867 0.84183 0.91677 1.01153 0.90361 1.21689 1.00242 0.95662 0.98030 1.22079 0.98331 0.98454 0.98240 1.20444 0.95292 0.87980 0.90345 0.95771 1.21803 0.98966 0.97764 1.00822 1.44060 1.51751 1.09852 1.24960 1.19108 0.99714 1.21796 0.96895 0.91386 1.24969 0.95005 1.01762 0.97668 1.69969 1.08816 1.35526 1.40143 0.86408 0.79434 0.80067 0.81588 1.21625 1.21816 1.20687 1.21270 0.90781 0.97875 0.86878 1.77743 0.95165 1.10691 1.24249 1.49034 1.06883 1.03001 1.60580 1.22453 0.75063 1.05562 1.03027 0.87532 0.91958 0.91740 0.81797 0.76263 0.91016 0.92980 0.92891 0.92550 0.92921 0.92133 0.94455 0.93705 0.87904 0.95617 0.90576 0.88905 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.41 101.05 0.95 1.02 16 2 O -0.29 -3.49 10.57 -19.02 -0.20 -3.69 16 3 C 0.26 3.87 7.78 -16.72 -0.13 3.74 16 4 C -0.23 -4.07 10.59 -39.46 -0.42 -4.49 16 5 C 0.07 1.36 7.09 -82.91 -0.59 0.77 16 6 C 0.60 12.60 7.79 -12.38 -0.10 12.50 16 7 O -0.53 -12.65 16.56 5.30 0.09 -12.56 16 8 N -0.68 -13.41 4.91 -54.67 -0.27 -13.68 16 9 C 0.12 2.32 2.81 -67.81 -0.19 2.13 16 10 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 11 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 12 C -0.13 -2.18 5.21 -26.61 -0.14 -2.32 16 13 C 0.17 3.35 3.50 -67.60 -0.24 3.11 16 14 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.53 7.93 37.16 0.29 -2.23 16 16 N -0.58 -14.21 2.92 -164.77 -0.48 -14.69 16 17 C -0.25 -6.65 8.67 -15.06 -0.13 -6.78 16 18 H 0.07 1.81 6.13 -52.48 -0.32 1.49 16 19 C 0.00 0.13 4.96 -17.43 -0.09 0.04 16 20 N -0.90 -26.91 11.02 55.49 0.61 -26.30 16 21 Si 0.89 22.76 29.58 -169.99 -5.03 17.73 16 22 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.16 3.87 4.91 -3.71 -0.02 3.85 16 26 N -0.25 -4.25 12.26 33.34 0.41 -3.84 16 27 N -0.40 -5.49 4.04 -68.19 -0.28 -5.76 16 28 C 0.08 0.64 9.57 59.84 0.57 1.21 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.36 6.70 -51.93 -0.35 0.01 16 31 H 0.06 0.33 5.67 -51.93 -0.29 0.03 16 32 H 0.16 2.76 8.06 -52.49 -0.42 2.34 16 33 H 0.40 7.44 6.47 -40.82 -0.26 7.18 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 38 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 39 H 0.06 1.22 7.63 -51.93 -0.40 0.83 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 42 H 0.10 2.96 5.92 -51.93 -0.31 2.66 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.44 7.62 -51.93 -0.40 0.05 16 45 H 0.09 0.52 4.68 -51.93 -0.24 0.27 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -34.38 362.71 -6.66 -41.05 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.62 Total: 5.83 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.36 Total: 10.47 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: 0.00 Total: -64.28 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.11 Total: -16.26 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.38 -6.66 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.620 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds