Wall clock time and date at job start Tue Mar 31 2020 14:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35769 * 117.00348 * 2 1 4 4 C 1.35591 * 126.08712 * 177.28325 * 3 2 1 5 5 C 1.41066 * 107.79606 * 180.24218 * 4 3 2 6 6 C 1.47725 * 125.97667 * 179.73590 * 5 4 3 7 7 O 1.21571 * 120.00250 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99825 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.49907 * 34.93952 * 9 8 6 11 11 C 1.53046 * 109.49709 * 155.00253 * 9 8 6 12 12 C 1.53041 * 109.53822 * 58.58623 * 11 9 8 13 13 C 1.53199 * 109.31356 * 61.36422 * 12 11 9 14 14 H 1.09001 * 109.58444 * 65.29234 * 13 12 11 15 15 C 1.52995 * 109.58764 * 185.57676 * 13 12 11 16 16 N 1.46925 * 108.77604 * 305.36947 * 13 12 11 17 17 C 1.36935 * 120.62673 * 233.58744 * 16 13 12 18 18 H 1.08004 * 120.00595 * 26.97994 * 17 16 13 19 19 C 1.38816 * 119.99786 * 206.97710 * 17 16 13 20 20 N 1.31619 * 119.99945 * 15.69194 * 19 17 16 21 21 Si 1.86801 * 120.00066 * 195.68871 * 19 17 16 22 22 H 1.48499 * 109.47194 * 90.00295 * 21 19 17 23 23 H 1.48501 * 109.47000 * 210.00149 * 21 19 17 24 24 H 1.48497 * 109.47218 * 330.00034 * 21 19 17 25 25 C 1.46919 * 118.74071 * 53.60168 * 16 13 12 26 26 N 1.31857 * 108.03817 * 359.75752 * 5 4 3 27 27 N 1.35852 * 126.08110 * 357.10987 * 3 2 1 28 28 C 1.46493 * 125.94859 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47253 * 171.04202 * 1 2 3 30 30 H 1.09004 * 109.47487 * 291.04833 * 1 2 3 31 31 H 1.09000 * 109.46890 * 51.04351 * 1 2 3 32 32 H 1.07995 * 126.10212 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99958 * 0.02562 * 8 6 5 34 34 H 1.08992 * 109.45934 * 178.60404 * 11 9 8 35 35 H 1.08997 * 109.45770 * 298.58188 * 11 9 8 36 36 H 1.08994 * 109.50089 * 181.31773 * 12 11 9 37 37 H 1.09005 * 109.50019 * 301.41785 * 12 11 9 38 38 H 1.09005 * 109.47236 * 60.00131 * 15 13 12 39 39 H 1.09003 * 109.47344 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.47467 * 300.00377 * 15 13 12 41 41 H 0.96998 * 119.99957 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.58894 * 186.60622 * 25 16 13 43 43 H 1.09001 * 109.58994 * 66.18342 * 25 16 13 44 44 H 1.08992 * 109.47344 * 276.94582 * 28 27 3 45 45 H 1.09004 * 109.47380 * 36.94658 * 28 27 3 46 46 H 1.09003 * 109.47001 * 156.94013 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3832 1.4243 0.0519 5 6 3.5971 2.8186 0.0366 6 6 4.9090 3.4959 0.0850 7 8 5.9304 2.8391 0.1435 8 7 4.9737 4.8419 0.0631 9 6 6.2747 5.5136 0.1105 10 1 7.0100 4.9212 -0.4340 11 6 6.1583 6.8983 -0.5308 12 6 5.1018 7.7193 0.2122 13 6 5.5324 7.8970 1.6717 14 1 6.4408 8.4978 1.7141 15 6 4.4183 8.5957 2.4536 16 7 5.7870 6.5724 2.2542 17 6 5.1680 6.1898 3.4142 18 1 4.2110 6.6135 3.6809 19 6 5.7705 5.2572 4.2475 20 7 7.0468 4.9711 4.1006 21 14 4.7700 4.4085 5.5772 22 1 4.1727 3.1643 5.0291 23 1 5.6537 4.0708 6.7219 24 1 3.6883 5.3157 6.0377 25 6 6.7185 5.6664 1.5688 26 7 2.4211 3.4114 -0.0279 27 7 1.4317 2.4204 -0.0554 28 6 -0.0135 2.6496 -0.1251 29 1 -0.3634 -1.0151 -0.1600 30 1 -0.3634 0.3691 0.9591 31 1 -0.3633 0.6461 -0.7991 32 1 4.1483 0.6637 0.1011 33 1 4.1587 5.3659 0.0160 34 1 7.1204 7.4072 -0.4730 35 1 5.8662 6.7913 -1.5754 36 1 5.0028 8.6969 -0.2594 37 1 4.1448 7.1987 0.1761 38 1 3.5123 7.9910 2.4142 39 1 4.7264 8.7208 3.4917 40 1 4.2223 9.5729 2.0122 41 1 7.4679 4.3197 4.6831 42 1 6.7075 4.6923 2.0580 43 1 7.7251 6.0831 1.6026 44 1 -0.3461 2.5602 -1.1592 45 1 -0.5288 1.9097 0.4875 46 1 -0.2411 3.6494 0.2447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:16 Heat of formation + Delta-G solvation = 25.397306 kcal Electronic energy + Delta-G solvation = -28808.172035 eV Core-core repulsion = 24928.764413 eV Total energy + Delta-G solvation = -3879.407622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.71003 -40.90680 -39.45043 -38.87779 -35.80022 -34.57298 -34.45170 -32.38510 -31.70360 -30.94758 -28.99051 -27.92034 -27.24777 -26.66034 -24.52764 -23.81832 -22.54404 -22.07106 -21.26801 -20.34495 -19.33227 -18.22404 -17.72255 -17.55550 -17.19916 -16.70206 -16.33636 -16.20971 -16.00597 -15.73986 -15.50131 -15.30743 -15.00578 -14.70610 -14.64615 -14.44228 -14.04836 -13.98608 -13.89048 -13.61922 -13.01608 -12.85048 -12.62270 -12.56007 -12.42149 -12.36362 -12.30137 -12.08595 -12.05851 -11.80816 -11.55967 -11.28532 -11.13502 -11.02445 -10.50376 -10.26619 -9.93144 -9.54847 -8.57467 -7.79317 -5.22134 0.23981 1.03800 1.11923 1.37641 1.42157 1.47798 1.82363 2.29660 2.45618 2.51265 3.12885 3.35773 3.66077 3.84660 3.98920 4.03846 4.12582 4.18255 4.22146 4.26021 4.30173 4.36192 4.51432 4.51614 4.64812 4.67491 4.70588 4.76282 4.83791 4.98647 4.99125 5.05892 5.10039 5.13334 5.22505 5.28338 5.35529 5.57492 5.63221 5.68928 5.75045 5.80005 6.14148 6.28381 6.46333 6.65929 7.20922 7.23484 7.96287 8.45082 9.25494 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.004703 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.095654 B = 5952.017975 C = 6763.806459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.299 6.299 3 C 0.283 3.717 4 C -0.270 4.270 5 C 0.045 3.955 6 C 0.590 3.410 7 O -0.571 6.571 8 N -0.673 5.673 9 C 0.124 3.876 10 H 0.072 0.928 11 C -0.110 4.110 12 C -0.120 4.120 13 C 0.155 3.845 14 H 0.019 0.981 15 C -0.128 4.128 16 N -0.596 5.596 17 C -0.232 4.232 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.935 5.935 21 Si 0.946 3.054 22 H -0.302 1.302 23 H -0.297 1.297 24 H -0.261 1.261 25 C 0.167 3.833 26 N -0.256 5.256 27 N -0.383 5.383 28 C 0.061 3.939 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.409 0.591 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.242 0.758 42 H 0.053 0.947 43 H 0.003 0.997 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 -2.141 -13.302 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.114 3.886 4 C -0.300 4.300 5 C -0.121 4.121 6 C 0.374 3.626 7 O -0.449 6.449 8 N -0.323 5.323 9 C 0.018 3.982 10 H 0.090 0.910 11 C -0.148 4.148 12 C -0.159 4.159 13 C 0.049 3.951 14 H 0.037 0.963 15 C -0.186 4.186 16 N -0.319 5.319 17 C -0.362 4.362 18 H 0.093 0.907 19 C -0.250 4.250 20 N -0.583 5.583 21 Si 0.776 3.224 22 H -0.230 1.230 23 H -0.224 1.224 24 H -0.186 1.186 25 C 0.040 3.960 26 N -0.088 5.088 27 N -0.182 5.182 28 C -0.076 4.076 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.021 0.979 44 H 0.125 0.875 45 H 0.140 0.860 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.112 -1.839 -13.204 22.489 hybrid contribution 0.085 -1.385 1.328 1.921 sum -18.028 -3.224 -11.876 21.827 Atomic orbital electron populations 1.24133 0.75187 1.07611 1.03153 1.86328 1.24574 1.20097 1.89532 1.19329 0.90471 0.80064 0.98720 1.20404 0.93590 0.95343 1.20698 1.21708 0.92720 0.93569 1.04140 1.17193 0.86165 0.82815 0.76457 1.90743 1.35795 1.66162 1.52224 1.45640 1.10530 1.04762 1.71396 1.21662 0.84295 0.94199 0.98051 0.91012 1.21673 1.00968 0.92759 0.99353 1.21970 0.97968 1.00574 0.95430 1.20767 0.95802 0.85661 0.92844 0.96333 1.21729 0.97804 0.99587 0.99470 1.44278 1.51286 1.11869 1.24517 1.19422 0.99567 1.20346 0.96911 0.90714 1.25624 0.95778 1.03443 1.00173 1.70140 1.10335 1.36499 1.41282 0.85561 0.78573 0.78831 0.79428 1.23031 1.22431 1.18584 1.20938 0.90206 0.95335 0.89478 1.77612 0.95096 1.11799 1.24306 1.49418 1.08326 1.02015 1.58393 1.23069 0.71673 1.07055 1.05840 0.84861 0.90628 0.89527 0.82842 0.75380 0.90216 0.89680 0.88919 0.92448 0.93362 0.94547 0.90449 0.94858 0.92824 0.97928 0.87474 0.85952 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.41 113.37 1.07 1.00 16 2 O -0.30 -6.58 10.57 -90.96 -0.96 -7.55 16 3 C 0.28 7.99 7.78 83.46 0.65 8.64 16 4 C -0.27 -9.73 10.59 22.35 0.24 -9.49 16 5 C 0.04 1.75 7.09 42.34 0.30 2.05 16 6 C 0.59 26.06 7.79 86.75 0.68 26.73 16 7 O -0.57 -29.18 16.56 -3.94 -0.07 -29.25 16 8 N -0.67 -26.77 4.91 -445.15 -2.19 -28.96 16 9 C 0.12 4.98 2.81 45.07 0.13 5.10 16 10 H 0.07 2.98 7.58 -2.39 -0.02 2.96 16 11 C -0.11 -3.32 5.59 30.62 0.17 -3.15 16 12 C -0.12 -3.58 5.21 30.67 0.16 -3.42 16 13 C 0.15 5.97 3.50 44.98 0.16 6.13 16 14 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 15 C -0.13 -4.46 7.93 71.98 0.57 -3.89 16 16 N -0.60 -29.40 2.92 -675.22 -1.97 -31.37 16 17 C -0.23 -12.74 8.67 84.03 0.73 -12.01 16 18 H 0.08 3.96 6.13 -2.91 -0.02 3.94 16 19 C -0.06 -3.27 4.96 84.86 0.42 -2.85 16 20 N -0.93 -59.00 11.02 21.65 0.24 -58.76 16 21 Si 0.95 48.16 29.58 68.60 2.03 50.19 16 22 H -0.30 -15.87 7.11 99.48 0.71 -15.17 16 23 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 24 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 25 C 0.17 8.54 4.91 86.36 0.42 8.96 16 26 N -0.26 -8.56 12.26 -48.42 -0.59 -9.16 16 27 N -0.38 -9.71 4.04 -480.57 -1.94 -11.65 16 28 C 0.06 0.73 9.57 127.77 1.22 1.96 16 29 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.54 6.70 -2.38 -0.02 0.52 16 31 H 0.09 0.45 5.67 -2.39 -0.01 0.44 16 32 H 0.15 5.61 8.06 -2.91 -0.02 5.58 16 33 H 0.41 14.82 6.47 -92.71 -0.60 14.22 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.73 6.40 -2.38 -0.02 1.71 16 38 H 0.05 1.70 7.42 -2.38 -0.02 1.68 16 39 H 0.04 1.41 7.63 -2.39 -0.02 1.39 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.05 3.29 5.92 -2.38 -0.01 3.28 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.11 0.70 7.62 -2.39 -0.02 0.68 16 45 H 0.12 0.77 4.68 -2.38 -0.01 0.76 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -81.22 362.71 1.87 -79.34 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.41 Total: 21.39 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 6.91 Total: 25.76 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -6.45 Total: -139.90 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.03 Total: -36.79 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -81.22 1.87 -79.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.741 kcal (2) G-P(sol) polarization free energy of solvation -81.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds