Wall clock time and date at job start Tue Mar 31 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35781 * 116.99945 * 2 1 4 4 C 1.35588 * 126.08051 * 175.62184 * 3 2 1 5 5 C 1.41065 * 107.79599 * 180.14044 * 4 3 2 6 6 C 1.47718 * 125.98150 * 179.86562 * 5 4 3 7 7 O 1.21569 * 120.00147 * 359.71087 * 6 5 4 8 8 N 1.34780 * 119.99844 * 179.71447 * 6 5 4 9 9 C 1.46497 * 119.99988 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49526 * 34.99755 * 9 8 6 11 11 C 1.53038 * 109.49776 * 155.06295 * 9 8 6 12 12 C 1.53043 * 109.53845 * 181.34650 * 11 9 8 13 13 C 1.53199 * 109.31298 * 298.64096 * 12 11 9 14 14 H 1.08999 * 109.58216 * 294.70200 * 13 12 11 15 15 C 1.53004 * 109.58371 * 174.42055 * 13 12 11 16 16 N 1.46920 * 108.77684 * 54.63245 * 13 12 11 17 17 C 1.36942 * 120.62827 * 126.41143 * 16 13 12 18 18 H 1.07993 * 120.00573 * 330.65424 * 17 16 13 19 19 C 1.38812 * 119.99528 * 150.64872 * 17 16 13 20 20 N 1.31627 * 120.00459 * 344.11353 * 19 17 16 21 21 Si 1.86798 * 119.99724 * 164.10757 * 19 17 16 22 22 H 1.48497 * 109.47159 * 90.00471 * 21 19 17 23 23 H 1.48507 * 109.47404 * 210.00068 * 21 19 17 24 24 H 1.48497 * 109.47436 * 330.00115 * 21 19 17 25 25 C 1.46928 * 118.74113 * 306.39226 * 16 13 12 26 26 N 1.31864 * 108.03587 * 359.59806 * 5 4 3 27 27 N 1.35839 * 126.08334 * 355.31856 * 3 2 1 28 28 C 1.46504 * 125.95069 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.47492 * 294.93576 * 1 2 3 30 30 H 1.09003 * 109.47287 * 54.93151 * 1 2 3 31 31 H 1.08996 * 109.47333 * 174.93931 * 1 2 3 32 32 H 1.08003 * 126.10579 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99694 * 0.02562 * 8 6 5 34 34 H 1.08993 * 109.46366 * 301.37260 * 11 9 8 35 35 H 1.09006 * 109.45876 * 61.33476 * 11 9 8 36 36 H 1.09007 * 109.49491 * 58.58798 * 12 11 9 37 37 H 1.08999 * 109.49787 * 178.68648 * 12 11 9 38 38 H 1.08998 * 109.47074 * 59.99751 * 15 13 12 39 39 H 1.08997 * 109.46734 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47222 * 299.99941 * 15 13 12 41 41 H 0.96998 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58478 * 293.82287 * 25 16 13 43 43 H 1.08992 * 109.58803 * 173.39879 * 25 16 13 44 44 H 1.08999 * 109.46736 * 276.30068 * 28 27 3 45 45 H 1.08993 * 109.46927 * 36.29819 * 28 27 3 46 46 H 1.08999 * 109.47331 * 156.30374 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3814 1.4253 0.0837 5 6 3.5961 2.8192 0.0532 6 6 4.9066 3.4972 0.1229 7 8 5.9257 2.8417 0.2212 8 7 4.9725 4.8426 0.0777 9 6 6.2721 5.5151 0.1475 10 1 7.0213 4.9131 -0.3668 11 6 6.1733 6.8882 -0.5210 12 6 7.5390 7.5777 -0.4784 13 6 7.9594 7.7793 0.9809 14 1 7.2746 8.4751 1.4656 15 6 9.3820 8.3405 1.0319 16 7 7.9168 6.4819 1.6690 17 6 9.0105 6.0166 2.3491 18 1 10.0036 6.2988 2.0325 19 6 8.8424 5.1823 3.4457 20 7 7.6643 5.0854 4.0247 21 14 10.2883 4.1969 4.0997 22 1 11.0049 4.9927 5.1284 23 1 9.7935 2.9349 4.7063 24 1 11.2160 3.8795 2.9845 25 6 6.6782 5.6934 1.6138 26 7 2.4225 3.4107 -0.0544 27 7 1.4337 2.4194 -0.0896 28 6 -0.0091 2.6473 -0.2028 29 1 -0.3634 0.4333 0.9319 30 1 -0.3634 0.5905 -0.8411 31 1 -0.3634 -1.0236 -0.0906 32 1 4.1449 0.6654 0.1618 33 1 4.1593 5.3656 -0.0002 34 1 5.8606 6.7656 -1.5579 35 1 5.4419 7.4983 0.0091 36 1 8.2762 6.9562 -0.9868 37 1 7.4735 8.5456 -0.9753 38 1 9.4142 9.2968 0.5100 39 1 9.6790 8.4836 2.0708 40 1 10.0659 7.6410 0.5511 41 1 7.5469 4.5020 4.7907 42 1 5.8875 6.2171 2.1509 43 1 6.8463 4.7169 2.0678 44 1 -0.3108 2.5545 -1.2461 45 1 -0.5416 1.9090 0.3965 46 1 -0.2482 3.6481 0.1568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071673768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:20 Heat of formation + Delta-G solvation = 48.638737 kcal Electronic energy + Delta-G solvation = -27860.471936 eV Core-core repulsion = 23982.072139 eV Total energy + Delta-G solvation = -3878.399798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.69719 -39.36867 -38.37315 -37.39789 -34.33660 -33.63086 -32.73411 -30.94778 -29.99992 -29.69276 -28.13836 -26.75065 -25.84007 -24.91445 -23.05833 -22.13077 -21.59315 -20.44206 -19.74200 -19.14960 -18.16049 -16.94191 -16.38828 -16.29087 -15.89339 -15.50910 -15.08760 -14.94997 -14.82033 -14.24159 -14.10066 -13.84236 -13.71822 -13.48160 -13.31342 -13.22515 -13.06456 -12.64584 -12.31480 -11.81383 -11.70335 -11.60759 -11.36529 -11.05329 -10.88179 -10.82621 -10.62062 -10.44976 -10.32831 -10.18651 -9.91438 -9.79614 -9.43586 -9.37784 -9.26450 -8.50722 -8.44830 -8.33520 -6.52766 -5.65886 -3.10108 1.38765 1.98325 2.20410 2.65333 3.47326 3.55773 3.56241 3.58494 3.74898 4.04536 4.38375 4.50409 4.61500 4.67152 4.76529 4.84506 5.06686 5.20211 5.37901 5.42668 5.45162 5.58789 5.65876 5.76866 5.81786 5.84710 6.04359 6.19278 6.33530 6.34367 6.39863 6.46283 6.52219 6.57612 6.70397 6.82176 6.99422 7.10281 7.11331 7.19460 7.26605 7.42414 7.82737 7.93770 8.02653 8.57844 8.65448 9.32687 9.97299 10.52737 11.42277 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003317 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.094284 B = 8440.177943 C = 9710.210349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.264 3.736 4 C -0.232 4.232 5 C 0.069 3.931 6 C 0.594 3.406 7 O -0.515 6.515 8 N -0.704 5.704 9 C 0.116 3.884 10 H 0.085 0.915 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.136 4.136 16 N -0.583 5.583 17 C -0.253 4.253 18 H 0.070 0.930 19 C 0.006 3.994 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.168 3.832 26 N -0.253 5.253 27 N -0.397 5.397 28 C 0.077 3.923 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.399 0.601 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 -3.811 -10.764 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.098 3.902 4 C -0.262 4.262 5 C -0.099 4.099 6 C 0.375 3.625 7 O -0.387 6.387 8 N -0.354 5.354 9 C 0.011 3.989 10 H 0.103 0.897 11 C -0.154 4.154 12 C -0.166 4.166 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.194 4.194 16 N -0.306 5.306 17 C -0.383 4.383 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.041 3.959 26 N -0.084 5.084 27 N -0.194 5.194 28 C -0.063 4.063 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.233 0.767 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.891 -3.583 -10.622 21.113 hybrid contribution 0.045 -1.036 0.457 1.133 sum -17.846 -4.619 -10.164 21.051 Atomic orbital electron populations 1.23630 0.78240 1.05205 1.01388 1.86312 1.21408 1.21683 1.90010 1.19536 0.91100 0.78887 1.00671 1.20405 0.92052 0.95851 1.17889 1.22083 0.93015 0.93077 1.01682 1.16835 0.85598 0.82426 0.77596 1.90855 1.34070 1.65091 1.48705 1.45943 1.10739 1.05543 1.73168 1.22063 0.83061 0.91989 1.01774 0.89729 1.21677 0.98532 0.95997 0.99226 1.22050 0.95971 0.98980 0.99550 1.20490 0.95004 0.88441 0.90263 0.95784 1.21800 0.97325 0.98357 1.01886 1.44019 1.12103 1.14950 1.59557 1.19118 0.86458 1.26530 1.06157 0.91244 1.25074 0.96552 1.01635 0.95986 1.70009 1.22480 1.39759 1.22093 0.86345 0.82188 0.79850 0.78670 1.21578 1.21581 1.20397 1.21082 0.87388 0.98599 0.88822 1.77707 0.95220 1.10891 1.24554 1.49037 1.07068 1.03064 1.60224 1.22505 0.75054 1.05583 1.03168 0.91914 0.91814 0.87361 0.81638 0.76732 0.92994 0.92217 0.92015 0.92691 0.94399 0.92049 0.92751 0.93748 0.96403 0.88747 0.90517 0.88674 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.37 101.05 0.95 1.00 16 2 O -0.29 -3.06 10.57 -19.05 -0.20 -3.26 16 3 C 0.26 3.44 7.78 -16.72 -0.13 3.31 16 4 C -0.23 -3.65 10.59 -39.46 -0.42 -4.07 16 5 C 0.07 1.18 7.09 -82.91 -0.59 0.59 16 6 C 0.59 11.69 7.79 -12.39 -0.10 11.59 16 7 O -0.51 -12.09 16.56 5.31 0.09 -12.00 16 8 N -0.70 -12.75 5.08 -54.67 -0.28 -13.03 16 9 C 0.12 2.36 2.60 -67.81 -0.18 2.18 16 10 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 11 C -0.12 -1.95 5.35 -26.69 -0.14 -2.10 16 12 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 13 C 0.16 3.44 3.50 -67.60 -0.24 3.20 16 14 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 15 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 16 N -0.58 -14.81 2.99 -164.78 -0.49 -15.30 16 17 C -0.25 -7.04 8.59 -15.06 -0.13 -7.17 16 18 H 0.07 1.88 6.21 -52.49 -0.33 1.55 16 19 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 20 N -0.90 -27.20 11.22 55.49 0.62 -26.57 16 21 Si 0.90 22.78 29.58 -169.99 -5.03 17.75 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.17 4.19 4.87 -3.71 -0.02 4.17 16 26 N -0.25 -3.77 12.26 33.34 0.41 -3.36 16 27 N -0.40 -4.72 4.04 -68.18 -0.28 -4.99 16 28 C 0.08 0.48 9.62 59.85 0.58 1.06 16 29 H 0.06 0.26 6.58 -51.93 -0.34 -0.08 16 30 H 0.06 0.24 5.92 -51.93 -0.31 -0.07 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.17 2.56 8.06 -52.48 -0.42 2.14 16 33 H 0.40 6.20 8.30 -40.82 -0.34 5.86 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 40 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.77 6.12 -51.93 -0.32 2.45 16 44 H 0.08 0.34 7.72 -51.93 -0.40 -0.06 16 45 H 0.10 0.36 4.51 -51.93 -0.23 0.13 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -35.20 366.69 -6.78 -41.99 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.81 Total: 4.02 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -0.35 Total: 9.23 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.01 Total: -63.25 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.26 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.20 -6.78 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.625 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds