Wall clock time and date at job start Tue Mar 31 2020 14:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35781 * 116.99945 * 2 1 4 4 C 1.35588 * 126.08051 * 175.62184 * 3 2 1 5 5 C 1.41065 * 107.79599 * 180.14044 * 4 3 2 6 6 C 1.47718 * 125.98150 * 179.86562 * 5 4 3 7 7 O 1.21569 * 120.00147 * 359.71087 * 6 5 4 8 8 N 1.34780 * 119.99844 * 179.71447 * 6 5 4 9 9 C 1.46497 * 119.99988 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.49526 * 34.99755 * 9 8 6 11 11 C 1.53038 * 109.49776 * 155.06295 * 9 8 6 12 12 C 1.53043 * 109.53845 * 181.34650 * 11 9 8 13 13 C 1.53199 * 109.31298 * 298.64096 * 12 11 9 14 14 H 1.08999 * 109.58216 * 294.70200 * 13 12 11 15 15 C 1.53004 * 109.58371 * 174.42055 * 13 12 11 16 16 N 1.46920 * 108.77684 * 54.63245 * 13 12 11 17 17 C 1.36942 * 120.62827 * 126.41143 * 16 13 12 18 18 H 1.07993 * 120.00573 * 330.65424 * 17 16 13 19 19 C 1.38812 * 119.99528 * 150.64872 * 17 16 13 20 20 N 1.31627 * 120.00459 * 344.11353 * 19 17 16 21 21 Si 1.86798 * 119.99724 * 164.10757 * 19 17 16 22 22 H 1.48497 * 109.47159 * 90.00471 * 21 19 17 23 23 H 1.48507 * 109.47404 * 210.00068 * 21 19 17 24 24 H 1.48497 * 109.47436 * 330.00115 * 21 19 17 25 25 C 1.46928 * 118.74113 * 306.39226 * 16 13 12 26 26 N 1.31864 * 108.03587 * 359.59806 * 5 4 3 27 27 N 1.35839 * 126.08334 * 355.31856 * 3 2 1 28 28 C 1.46504 * 125.95069 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.47492 * 294.93576 * 1 2 3 30 30 H 1.09003 * 109.47287 * 54.93151 * 1 2 3 31 31 H 1.08996 * 109.47333 * 174.93931 * 1 2 3 32 32 H 1.08003 * 126.10579 * 0.02562 * 4 3 2 33 33 H 0.96998 * 119.99694 * 0.02562 * 8 6 5 34 34 H 1.08993 * 109.46366 * 301.37260 * 11 9 8 35 35 H 1.09006 * 109.45876 * 61.33476 * 11 9 8 36 36 H 1.09007 * 109.49491 * 58.58798 * 12 11 9 37 37 H 1.08999 * 109.49787 * 178.68648 * 12 11 9 38 38 H 1.08998 * 109.47074 * 59.99751 * 15 13 12 39 39 H 1.08997 * 109.46734 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47222 * 299.99941 * 15 13 12 41 41 H 0.96998 * 119.99829 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.58478 * 293.82287 * 25 16 13 43 43 H 1.08992 * 109.58803 * 173.39879 * 25 16 13 44 44 H 1.08999 * 109.46736 * 276.30068 * 28 27 3 45 45 H 1.08993 * 109.46927 * 36.29819 * 28 27 3 46 46 H 1.08999 * 109.47331 * 156.30374 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3814 1.4253 0.0837 5 6 3.5961 2.8192 0.0532 6 6 4.9066 3.4972 0.1229 7 8 5.9257 2.8417 0.2212 8 7 4.9725 4.8426 0.0777 9 6 6.2721 5.5151 0.1475 10 1 7.0213 4.9131 -0.3668 11 6 6.1733 6.8882 -0.5210 12 6 7.5390 7.5777 -0.4784 13 6 7.9594 7.7793 0.9809 14 1 7.2746 8.4751 1.4656 15 6 9.3820 8.3405 1.0319 16 7 7.9168 6.4819 1.6690 17 6 9.0105 6.0166 2.3491 18 1 10.0036 6.2988 2.0325 19 6 8.8424 5.1823 3.4457 20 7 7.6643 5.0854 4.0247 21 14 10.2883 4.1969 4.0997 22 1 11.0049 4.9927 5.1284 23 1 9.7935 2.9349 4.7063 24 1 11.2160 3.8795 2.9845 25 6 6.6782 5.6934 1.6138 26 7 2.4225 3.4107 -0.0544 27 7 1.4337 2.4194 -0.0896 28 6 -0.0091 2.6473 -0.2028 29 1 -0.3634 0.4333 0.9319 30 1 -0.3634 0.5905 -0.8411 31 1 -0.3634 -1.0236 -0.0906 32 1 4.1449 0.6654 0.1618 33 1 4.1593 5.3656 -0.0002 34 1 5.8606 6.7656 -1.5579 35 1 5.4419 7.4983 0.0091 36 1 8.2762 6.9562 -0.9868 37 1 7.4735 8.5456 -0.9753 38 1 9.4142 9.2968 0.5100 39 1 9.6790 8.4836 2.0708 40 1 10.0659 7.6410 0.5511 41 1 7.5469 4.5020 4.7907 42 1 5.8875 6.2171 2.1509 43 1 6.8463 4.7169 2.0678 44 1 -0.3108 2.5545 -1.2461 45 1 -0.5416 1.9090 0.3965 46 1 -0.2482 3.6481 0.1568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:19 Heat of formation + Delta-G solvation = 21.244134 kcal Electronic energy + Delta-G solvation = -27861.659855 eV Core-core repulsion = 23982.072139 eV Total energy + Delta-G solvation = -3879.587717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.73710 -40.86959 -39.45199 -38.96226 -36.04922 -34.67166 -34.49382 -32.40110 -31.74296 -30.99586 -29.02211 -27.86734 -27.26797 -26.58645 -24.47968 -23.81471 -22.56053 -22.04370 -21.30691 -20.70423 -19.24663 -18.32371 -17.72174 -17.49816 -17.43456 -16.78625 -16.34773 -16.20842 -16.07846 -15.72614 -15.45480 -15.29768 -15.02946 -14.92960 -14.67082 -14.45435 -14.12496 -13.99789 -13.89061 -13.48291 -13.06764 -12.76835 -12.67819 -12.52686 -12.42235 -12.31389 -12.27239 -12.11470 -11.99620 -11.81160 -11.66856 -11.47178 -11.16633 -11.08621 -10.51243 -10.31308 -10.05932 -9.56509 -8.60348 -7.83018 -5.28949 0.18294 1.02043 1.07906 1.42202 1.47356 1.54711 1.77251 2.24031 2.31867 2.53238 3.06575 3.34007 3.68334 3.82896 3.96655 4.01081 4.11141 4.15945 4.25067 4.27362 4.30693 4.37337 4.40803 4.52003 4.61248 4.65063 4.71877 4.73411 4.82737 4.91060 4.98063 5.03143 5.09025 5.19713 5.20425 5.30189 5.33541 5.43982 5.57524 5.63454 5.73093 5.80238 6.09345 6.26855 6.43540 6.58094 7.13231 7.19752 7.92086 8.41903 9.22448 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.003317 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.094284 B = 8440.177943 C = 9710.210349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.284 3.716 4 C -0.268 4.268 5 C 0.046 3.954 6 C 0.591 3.409 7 O -0.565 6.565 8 N -0.691 5.691 9 C 0.130 3.870 10 H 0.058 0.942 11 C -0.108 4.108 12 C -0.117 4.117 13 C 0.152 3.848 14 H 0.022 0.978 15 C -0.129 4.129 16 N -0.602 5.602 17 C -0.250 4.250 18 H 0.076 0.924 19 C -0.054 4.054 20 N -0.935 5.935 21 Si 0.957 3.043 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.271 1.271 25 C 0.180 3.820 26 N -0.255 5.255 27 N -0.381 5.381 28 C 0.060 3.940 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.414 0.586 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.244 0.756 42 H -0.003 1.003 43 H 0.042 0.958 44 H 0.104 0.896 45 H 0.125 0.875 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.356 -2.774 -12.894 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.115 3.885 4 C -0.298 4.298 5 C -0.120 4.120 6 C 0.375 3.625 7 O -0.442 6.442 8 N -0.342 5.342 9 C 0.024 3.976 10 H 0.077 0.923 11 C -0.145 4.145 12 C -0.156 4.156 13 C 0.047 3.953 14 H 0.039 0.961 15 C -0.186 4.186 16 N -0.326 5.326 17 C -0.381 4.381 18 H 0.094 0.906 19 C -0.249 4.249 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.196 1.196 25 C 0.053 3.947 26 N -0.087 5.087 27 N -0.179 5.179 28 C -0.078 4.078 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.251 0.749 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.305 -2.499 -12.788 24.126 hybrid contribution 0.562 -1.382 1.087 1.846 sum -19.742 -3.880 -11.701 23.275 Atomic orbital electron populations 1.24124 0.75145 1.07625 1.03128 1.86345 1.24584 1.20081 1.89479 1.19318 0.90467 0.80099 0.98569 1.20408 0.93703 0.95347 1.20379 1.21569 0.92423 0.93523 1.04507 1.17269 0.86276 0.82638 0.76317 1.90812 1.36199 1.66156 1.50995 1.45774 1.10670 1.05311 1.72465 1.21659 0.83423 0.94114 0.98400 0.92349 1.21656 0.98886 0.93179 1.00826 1.21957 0.95753 1.01112 0.96784 1.20825 0.96333 0.86141 0.91997 0.96065 1.21731 0.95794 1.00165 1.00941 1.44310 1.11379 1.17097 1.59825 1.19480 0.87638 1.25527 1.05437 0.90603 1.25816 0.98754 1.03364 0.96992 1.70175 1.24398 1.40828 1.22701 0.85426 0.79651 0.78053 0.78330 1.20461 1.22760 1.19572 1.20739 0.86971 0.95601 0.91370 1.77589 0.95005 1.11822 1.24298 1.49421 1.08491 1.02037 1.57961 1.23115 0.71674 1.07275 1.05736 0.90394 0.89643 0.84910 0.82912 0.74942 0.89585 0.90919 0.92681 0.88417 0.90217 0.94343 0.93458 0.94707 0.98480 0.93937 0.87800 0.85673 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.37 113.37 1.06 1.02 16 2 O -0.30 -5.78 10.57 -91.10 -0.96 -6.74 16 3 C 0.28 7.13 7.78 83.46 0.65 7.78 16 4 C -0.27 -8.82 10.59 22.35 0.24 -8.59 16 5 C 0.05 1.61 7.09 42.34 0.30 1.91 16 6 C 0.59 24.67 7.79 86.75 0.68 25.34 16 7 O -0.57 -28.73 16.56 -3.93 -0.07 -28.79 16 8 N -0.69 -25.75 5.08 -445.16 -2.26 -28.01 16 9 C 0.13 5.38 2.60 45.07 0.12 5.50 16 10 H 0.06 2.75 7.58 -2.39 -0.02 2.73 16 11 C -0.11 -3.37 5.35 30.62 0.16 -3.21 16 12 C -0.12 -3.73 5.37 30.68 0.16 -3.57 16 13 C 0.15 6.20 3.50 44.98 0.16 6.35 16 14 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 15 C -0.13 -4.71 7.95 71.98 0.57 -4.14 16 16 N -0.60 -31.37 2.99 -675.23 -2.02 -33.39 16 17 C -0.25 -14.36 8.59 84.03 0.72 -13.63 16 18 H 0.08 4.16 6.21 -2.91 -0.02 4.15 16 19 C -0.05 -3.26 4.93 84.86 0.42 -2.84 16 20 N -0.93 -59.70 11.22 21.65 0.24 -59.45 16 21 Si 0.96 48.67 29.58 68.60 2.03 50.70 16 22 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 23 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 24 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 25 C 0.18 9.45 4.87 86.36 0.42 9.87 16 26 N -0.25 -7.44 12.26 -48.42 -0.59 -8.03 16 27 N -0.38 -8.27 4.04 -480.56 -1.94 -10.21 16 28 C 0.06 0.52 9.62 127.77 1.23 1.75 16 29 H 0.08 0.32 6.58 -2.39 -0.02 0.31 16 30 H 0.09 0.24 5.92 -2.39 -0.01 0.23 16 31 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.15 5.21 8.06 -2.91 -0.02 5.18 16 33 H 0.41 12.75 8.30 -92.71 -0.77 11.98 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 40 H 0.05 1.77 7.40 -2.39 -0.02 1.76 16 41 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.04 2.67 6.12 -2.39 -0.01 2.65 16 44 H 0.10 0.43 7.72 -2.39 -0.02 0.41 16 45 H 0.13 0.36 4.51 -2.39 -0.01 0.35 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.99 366.69 1.56 -82.43 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.24 Total: 17.96 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.89 Total: 23.54 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -6.57 Total: -139.10 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.03 Total: -35.53 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -83.99 1.56 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.678 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds